Mercurial > repos > sanbi-uwc > package_novocraft_3_04_01

changeset 0:a8d683b85ebe draft

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planemo upload for repository https://github.com/zipho/package_novocraft_3_04_01.git commit 9f2a0cf15a0816b08b3e49a7682f02a313629407
author sanbi-uwc
date Wed, 30 Mar 2016 10:11:05 -0400
parents
children 69057f52074f
files tool_dependencies.xml
diffstat 1 files changed, 29 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Mar 30 10:11:05 2016 -0400
@@ -0,0 +1,29 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="novocraft" version="3.04.01">
+        <install version="3.04.01">
+            <actions_group>
+                <actions>
+                    <action type="download_by_url">http://intranet.sanbi.ac.za/novocraftV3.04.01.Linux3.0.tar.gz</action>
+                    <action type="move_directory_files">
+                        <source_directory>.</source_directory>
+                        <destination_directory>$INSTALL_DIR</destination_directory>
+                    </action>
+                </actions>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions_group>
+        </install>
+        <readme>
+             <![CDATA[
+                Release Novoalign V3.04.01, NovoalignCS V1.06.01, Novomethyl V1.02, Novosort V1.03.09. 14 Jan 2016
+
+                Changes:
+                Novoalign[CS]
+                    Fix: For pairs with one read unmapped the SAM flags may be set incorrectly in the unmapped read (Mate not Mapped set) causing novosort markduplicates to report an error.
+            ]]>
+        </readme>
+    </package>
+</tool_dependency>
+