Mercurial > repos > sanbi-uwc > neo4j_datatypes
changeset 21:c48ea98bd3b2 draft
planemo upload for repository https://github.com/SANBI-SA/tools-sanbi-uwc/tree/master/datatypes/neo4j_datatypes commit 84f212526ffc0d9206dcabc86d214860c2c03db5
| author | sanbi-uwc |
|---|---|
| date | Sat, 25 Jun 2016 20:03:05 -0400 |
| parents | 45b969e6ff9a |
| children | 9a98be1659c7 |
| files | neo4j.py |
| diffstat | 1 files changed, 30 insertions(+), 16 deletions(-) [+] |
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--- a/neo4j.py Thu Jun 09 07:50:13 2016 -0400 +++ b/neo4j.py Sat Jun 25 20:03:05 2016 -0400 @@ -20,6 +20,8 @@ derived from html - composite datatype elements stored in extra files path """ + def __init__(self): + Html.__init__( self, **kwd ) def get_mime(self): """Returns the mime type of the datatype""" @@ -46,26 +48,38 @@ """Documented as an old display method, but still gets called via tests etc This allows us to format the data shown in the central pane via the "eye" icon. """ - trans.response.set_content_type(data.get_mime()) - trans.log_event( "Display dataset id: %s" % str( data.id ) ) + if preview == False: + trans.response.set_content_type(data.get_mime()) + trans.log_event( "Display dataset id: %s" % str( data.id ) ) + + # the target directory name + dir_name = str(os.path.dirname( trans.app.object_store.get_filename(data.dataset) )) + '/dataset_{}_files/neo4jdb'.format( data.dataset.id ) - # the target directory name - dir_name = str(os.path.dirname( trans.app.object_store.get_filename(data.dataset) )) + '/dataset_{}_files/neo4jdb'.format( data.dataset.id ) + # generate unique filename for this dataset + valid_chars = '.,^_-()[]0123456789abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ' + fname = ''.join(c in valid_chars and c or '_' for c in data.name)[0:150] - # generate unique filename for this dataset - valid_chars = '.,^_-()[]0123456789abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ' - fname = ''.join(c in valid_chars and c or '_' for c in data.name)[0:150] + # zip the target directory (dir_name) using the fname + shutil.make_archive(fname, 'zip', dir_name) + download_zip = fname + '.zip' - # zip the target directory (dir_name) using the fname - shutil.make_archive(fname, 'zip', dir_name) - download_zip = fname + '.zip' + # setup headers for the download + trans.response.headers['Content-Length'] = int( os.stat( download_zip ).st_size ) + trans.response.set_content_type( "application/octet-stream" ) # force octet-stream so Safari doesn't append mime extensions to filename + trans.response.headers["Content-Disposition"] = 'attachment; filename="Galaxy%s-[%s].%s"' % (data.hid, download_zip , "zip") - # setup headers for the download - trans.response.headers['Content-Length'] = int( os.stat( download_zip ).st_size ) - trans.response.set_content_type( "application/octet-stream" ) # force octet-stream so Safari doesn't append mime extensions to filename - trans.response.headers["Content-Disposition"] = 'attachment; filename="Galaxy%s-[%s].%s"' % (data.hid, download_zip , "zip") - - return open( download_zip ) + return open( download_zip ) + else: + rval = [ + '<html><head><title>Files for Composite Dataset (%s)</title></head><p/>\ + This composite dataset is composed of the following files:<p/><ul>' % (self.file_ext)] + for composite_name, composite_file in self.get_composite_files(dataset=data).iteritems(): + opt_text = '' + if composite_file.optional: + opt_text = ' (optional)' + rval.append('<li><a href="%s">%s</a>%s' % (composite_name, composite_name, opt_text)) + rval.append('</ul></html>') + return "\n".join(rval) class Neo4jDB(Neo4j, Data): """Class for neo4jDB database files."""