Mercurial > repos > sanbi-uwc > data_manager_shapeit_reference

diff data_manager/shapeit_ref.xml @ 1:52f0767fe68d draft

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planemo upload for repository https://github.com/pvanheus/data_manager_shapeit_reference commit b42d6cc8358088a50bc4463367c740c1e9dc71d8
author sanbi-uwc
date Thu, 13 Sep 2018 06:25:32 -0400
parents f86c65c60056
children 495439e68fca
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line diff
--- a/data_manager/shapeit_ref.xml	Tue Sep 11 10:39:38 2018 -0400
+++ b/data_manager/shapeit_ref.xml	Thu Sep 13 06:25:32 2018 -0400
@@ -1,17 +1,19 @@
-<tool id="shapeit_reference_manager" name="SHAPEIT reference data path manager" tool_type="manage_data" version="0.0.1">
+<tool id="shapeit_reference_manager" name="SHAPEIT reference data path manager" tool_type="manage_data" version="0.0.2">
     <command detect_errors="aggressive"><![CDATA[
     python $__tool_directory__/shapeit_ref.py
         '${key}'
         '${description}'
         '${path}'
-        '${prefix}'
+        '${reference_prefix}'
+        '${map_prefix}'
         '${output_file}'
     ]]></command>>
     <inputs>
         <param name="key" type="text" label="Short key to identify this reference set (no spaces)" />
         <param name="description" type="text" label="Description of the reference data" />
         <param name="path" type="text" label="Filesystem path to directory containing this reference set" />
-        <param name="prefix" type="text" label="Filename prefix for files in this reference set" />
+        <param name="reference_prefix" type="text" label="Filename prefix for the reference (.hap / .legend / .sample) files" />
+        <param name="map_prefix" type="text" label="Filename prefix for map files in this reference set" />
     </inputs>
     <outputs>
         <data name="output_file" format="data_manager_json" />