Mercurial > repos > sanbi-uwc > data_manager_shapeit_reference
comparison data_manager/shapeit_ref.xml @ 1:52f0767fe68d draft
planemo upload for repository https://github.com/pvanheus/data_manager_shapeit_reference commit b42d6cc8358088a50bc4463367c740c1e9dc71d8
author | sanbi-uwc |
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date | Thu, 13 Sep 2018 06:25:32 -0400 |
parents | f86c65c60056 |
children | 495439e68fca |
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0:f86c65c60056 | 1:52f0767fe68d |
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1 <tool id="shapeit_reference_manager" name="SHAPEIT reference data path manager" tool_type="manage_data" version="0.0.1"> | 1 <tool id="shapeit_reference_manager" name="SHAPEIT reference data path manager" tool_type="manage_data" version="0.0.2"> |
2 <command detect_errors="aggressive"><![CDATA[ | 2 <command detect_errors="aggressive"><![CDATA[ |
3 python $__tool_directory__/shapeit_ref.py | 3 python $__tool_directory__/shapeit_ref.py |
4 '${key}' | 4 '${key}' |
5 '${description}' | 5 '${description}' |
6 '${path}' | 6 '${path}' |
7 '${prefix}' | 7 '${reference_prefix}' |
8 '${map_prefix}' | |
8 '${output_file}' | 9 '${output_file}' |
9 ]]></command>> | 10 ]]></command>> |
10 <inputs> | 11 <inputs> |
11 <param name="key" type="text" label="Short key to identify this reference set (no spaces)" /> | 12 <param name="key" type="text" label="Short key to identify this reference set (no spaces)" /> |
12 <param name="description" type="text" label="Description of the reference data" /> | 13 <param name="description" type="text" label="Description of the reference data" /> |
13 <param name="path" type="text" label="Filesystem path to directory containing this reference set" /> | 14 <param name="path" type="text" label="Filesystem path to directory containing this reference set" /> |
14 <param name="prefix" type="text" label="Filename prefix for files in this reference set" /> | 15 <param name="reference_prefix" type="text" label="Filename prefix for the reference (.hap / .legend / .sample) files" /> |
16 <param name="map_prefix" type="text" label="Filename prefix for map files in this reference set" /> | |
15 </inputs> | 17 </inputs> |
16 <outputs> | 18 <outputs> |
17 <data name="output_file" format="data_manager_json" /> | 19 <data name="output_file" format="data_manager_json" /> |
18 </outputs> | 20 </outputs> |
19 <help><![CDATA[ | 21 <help><![CDATA[ |