comparison data_manager/shapeit_ref.xml @ 1:52f0767fe68d draft

planemo upload for repository https://github.com/pvanheus/data_manager_shapeit_reference commit b42d6cc8358088a50bc4463367c740c1e9dc71d8
author sanbi-uwc
date Thu, 13 Sep 2018 06:25:32 -0400
parents f86c65c60056
children 495439e68fca
comparison
equal deleted inserted replaced
0:f86c65c60056 1:52f0767fe68d
1 <tool id="shapeit_reference_manager" name="SHAPEIT reference data path manager" tool_type="manage_data" version="0.0.1"> 1 <tool id="shapeit_reference_manager" name="SHAPEIT reference data path manager" tool_type="manage_data" version="0.0.2">
2 <command detect_errors="aggressive"><![CDATA[ 2 <command detect_errors="aggressive"><![CDATA[
3 python $__tool_directory__/shapeit_ref.py 3 python $__tool_directory__/shapeit_ref.py
4 '${key}' 4 '${key}'
5 '${description}' 5 '${description}'
6 '${path}' 6 '${path}'
7 '${prefix}' 7 '${reference_prefix}'
8 '${map_prefix}'
8 '${output_file}' 9 '${output_file}'
9 ]]></command>> 10 ]]></command>>
10 <inputs> 11 <inputs>
11 <param name="key" type="text" label="Short key to identify this reference set (no spaces)" /> 12 <param name="key" type="text" label="Short key to identify this reference set (no spaces)" />
12 <param name="description" type="text" label="Description of the reference data" /> 13 <param name="description" type="text" label="Description of the reference data" />
13 <param name="path" type="text" label="Filesystem path to directory containing this reference set" /> 14 <param name="path" type="text" label="Filesystem path to directory containing this reference set" />
14 <param name="prefix" type="text" label="Filename prefix for files in this reference set" /> 15 <param name="reference_prefix" type="text" label="Filename prefix for the reference (.hap / .legend / .sample) files" />
16 <param name="map_prefix" type="text" label="Filename prefix for map files in this reference set" />
15 </inputs> 17 </inputs>
16 <outputs> 18 <outputs>
17 <data name="output_file" format="data_manager_json" /> 19 <data name="output_file" format="data_manager_json" />
18 </outputs> 20 </outputs>
19 <help><![CDATA[ 21 <help><![CDATA[