Mercurial > repos > sanbi-uwc > data_manager_primer_scheme_bedfiles

changeset 6:b6c6e3ce7c14 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit 88130bb7c37cca7eff6df235ba17e0ae9f11df86-dirty"
author sanbi-uwc
date Sat, 18 Apr 2020 15:41:27 +0000
parents e3655a2755c1
children e5552d150daf
files data_manager/install_primer_scheme_bedfiles.xml tool-data/artic_sars_cov2_primers.loc.sample tool-data/primer_scheme_bedfiles.loc.sample
diffstat 3 files changed, 10 insertions(+), 9 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/install_primer_scheme_bedfiles.xml	Sat Apr 18 15:35:45 2020 +0000
+++ b/data_manager/install_primer_scheme_bedfiles.xml	Sat Apr 18 15:41:27 2020 +0000
@@ -1,4 +1,4 @@
-<tool id="data_manager_primer_scheme_bedfiles" name="BED-format primer scheme data manager" version="0.0.6" tool_type="manage_data" profile="19.05">
+<tool id="data_manager_primer_scheme_bedfiles" name="BED-format primer scheme data manager" version="0.0.7" tool_type="manage_data" profile="19.05">
     <requirements>
         <requirement type="package">python</requirement>
         <requirement type="package" version="2.22.0">requests</requirement>
@@ -18,7 +18,7 @@
     <inputs>
         <conditional name="input">
             <param name="input_type" label="Choose the source for primer schemes" type="select">
-                <option value="ARTIC" selected="true">ARTIC Github page</option>
+                <option value="ARTIC" selected="true">ARTIC SARS-CoV-2 Github page</option>
                 <option value="history">History</option>
             </param>
             <when value="ARTIC">                    
--- a/tool-data/artic_sars_cov2_primers.loc.sample	Sat Apr 18 15:35:45 2020 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,7 +0,0 @@
-# this is a tab separated file describing the location of ARTIC primers for use in SARS-CoV-2 sequencing
-#
-# the columns are:
-# value  description path
-#
-# for example
-# ARTICv1   ARTIC v1 primers    /data/galaxy/tool_data/artic_primers/ARTICv1.bed
\ No newline at end of file
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/primer_scheme_bedfiles.loc.sample	Sat Apr 18 15:41:27 2020 +0000
@@ -0,0 +1,8 @@
+# this is a tab separated file describing the location of primer schemes used for amplicon
+# sequencing (e.g. using the ARTIC SARS-CoV-2 protocol)
+#
+# the columns are:
+# value  description path
+#
+# for example
+# ARTICv1   ARTIC v1 primers    /data/galaxy/tool_data/artic_primers/ARTICv1.bed
\ No newline at end of file