Mercurial > repos > sanbi-uwc > data_manager_primer_scheme_bedfiles

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit ec88f278d061a0ed14b92e0563d276a30fb04b71-dirty"
author sanbi-uwc
date Wed, 22 Apr 2020 09:02:09 +0000
parents 730e8bf0763d
children
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b6c6e3ce7c14 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit 88130bb7c37cca7eff6df235ba17e0ae9f11df86-dirty"
sanbi-uwc
parents:
diff changeset
1 # this is a tab separated file describing the location of primer schemes used for amplicon
b6c6e3ce7c14 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit 88130bb7c37cca7eff6df235ba17e0ae9f11df86-dirty"
sanbi-uwc
parents:
diff changeset
2 # sequencing (e.g. using the ARTIC SARS-CoV-2 protocol)
b6c6e3ce7c14 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit 88130bb7c37cca7eff6df235ba17e0ae9f11df86-dirty"
sanbi-uwc
parents:
diff changeset
3 #
b6c6e3ce7c14 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit 88130bb7c37cca7eff6df235ba17e0ae9f11df86-dirty"
sanbi-uwc
parents:
diff changeset
4 # the columns are:
b6c6e3ce7c14 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit 88130bb7c37cca7eff6df235ba17e0ae9f11df86-dirty"
sanbi-uwc
parents:
diff changeset
5 # value description path
b6c6e3ce7c14 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit 88130bb7c37cca7eff6df235ba17e0ae9f11df86-dirty"
sanbi-uwc
parents:
diff changeset
6 #
b6c6e3ce7c14 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit 88130bb7c37cca7eff6df235ba17e0ae9f11df86-dirty"
sanbi-uwc
parents:
diff changeset
7 # for example
8
730e8bf0763d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit ec88f278d061a0ed14b92e0563d276a30fb04b71-dirty"
sanbi-uwc
parents: 6
diff changeset
8 # SARS-CoV-2-ARTICv1 SARS-CoV-2 ARTIC v1 primers /data/galaxy/tool_data/artic_primers/SARS-CoV-2-ARTICv1.bed