Mercurial > repos > sanbi-uwc > data_manager_novocraft_index_builder

annotate data_manager_conf.xml @ 11:a9b725202132 draft

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planemo upload for repository https://github.com/zipho/data_manager_novocraft_index_builder commit 9ea1c9c5fdf0ed65170469f809b81ba9e82f91d3
author sanbi-uwc
date Mon, 07 Mar 2016 02:27:51 -0500
parents 68b7023c6a2f
children 283eec05d1de
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6cddc1a6e282 planemo upload for repository https://github.com/zipho/data_manager_novocraft_index_builder commit 3a0b36e3ee66f35f7e2d5e1220cd883a9d528fac
sanbi-uwc
parents:
diff changeset
1 <?xml version="1.0" encoding="utf-8" ?>
6cddc1a6e282 planemo upload for repository https://github.com/zipho/data_manager_novocraft_index_builder commit 3a0b36e3ee66f35f7e2d5e1220cd883a9d528fac
sanbi-uwc
parents:
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2 <data_managers>
6cddc1a6e282 planemo upload for repository https://github.com/zipho/data_manager_novocraft_index_builder commit 3a0b36e3ee66f35f7e2d5e1220cd883a9d528fac
sanbi-uwc
parents:
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3 <data_manager tool_file="data_manager/novocraft_index_builder.xml" id="novocraft_index_builder" version="0.0.1">
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8dd4b25716d1 planemo upload for repository https://github.com/zipho/data_manager_novocraft_index_builder commit 05004076adb510abc08f6c1e28ba22b2c1a29534
sanbi-uwc
parents: 4
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4 <data_table name="novocraft_index">
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6cddc1a6e282 planemo upload for repository https://github.com/zipho/data_manager_novocraft_index_builder commit 3a0b36e3ee66f35f7e2d5e1220cd883a9d528fac
sanbi-uwc
parents:
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5 <output>
6cddc1a6e282 planemo upload for repository https://github.com/zipho/data_manager_novocraft_index_builder commit 3a0b36e3ee66f35f7e2d5e1220cd883a9d528fac
sanbi-uwc
parents:
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6 <column name="value" />
6cddc1a6e282 planemo upload for repository https://github.com/zipho/data_manager_novocraft_index_builder commit 3a0b36e3ee66f35f7e2d5e1220cd883a9d528fac
sanbi-uwc
parents:
diff changeset
7 <column name="dbkey" />
6cddc1a6e282 planemo upload for repository https://github.com/zipho/data_manager_novocraft_index_builder commit 3a0b36e3ee66f35f7e2d5e1220cd883a9d528fac
sanbi-uwc
parents:
diff changeset
8 <column name="name" />
6cddc1a6e282 planemo upload for repository https://github.com/zipho/data_manager_novocraft_index_builder commit 3a0b36e3ee66f35f7e2d5e1220cd883a9d528fac
sanbi-uwc
parents:
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9 <column name="path" output_ref="out_file">
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68b7023c6a2f planemo upload for repository https://github.com/zipho/data_manager_novocraft_index_builder commit 41c23255d958406b015574dd15b07d44175a2c1b
sanbi-uwc
parents: 9
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10 <move type="file">
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6cddc1a6e282 planemo upload for repository https://github.com/zipho/data_manager_novocraft_index_builder commit 3a0b36e3ee66f35f7e2d5e1220cd883a9d528fac
sanbi-uwc
parents:
diff changeset
11 <!-- no need to set source, gets taken from out_dir.extra_files_path -->
6cddc1a6e282 planemo upload for repository https://github.com/zipho/data_manager_novocraft_index_builder commit 3a0b36e3ee66f35f7e2d5e1220cd883a9d528fac
sanbi-uwc
parents:
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12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/novocraft_index/${value}</target>
6cddc1a6e282 planemo upload for repository https://github.com/zipho/data_manager_novocraft_index_builder commit 3a0b36e3ee66f35f7e2d5e1220cd883a9d528fac
sanbi-uwc
parents:
diff changeset
13 </move>
6cddc1a6e282 planemo upload for repository https://github.com/zipho/data_manager_novocraft_index_builder commit 3a0b36e3ee66f35f7e2d5e1220cd883a9d528fac
sanbi-uwc
parents:
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14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/{$dbkey}/novocraft_index/${value}/${path}</value_translation>
6cddc1a6e282 planemo upload for repository https://github.com/zipho/data_manager_novocraft_index_builder commit 3a0b36e3ee66f35f7e2d5e1220cd883a9d528fac
sanbi-uwc
parents:
diff changeset
15 <value_translation type="function">abspath</value_translation>
6cddc1a6e282 planemo upload for repository https://github.com/zipho/data_manager_novocraft_index_builder commit 3a0b36e3ee66f35f7e2d5e1220cd883a9d528fac
sanbi-uwc
parents:
diff changeset
16 </column>
6cddc1a6e282 planemo upload for repository https://github.com/zipho/data_manager_novocraft_index_builder commit 3a0b36e3ee66f35f7e2d5e1220cd883a9d528fac
sanbi-uwc
parents:
diff changeset
17 </output>
6cddc1a6e282 planemo upload for repository https://github.com/zipho/data_manager_novocraft_index_builder commit 3a0b36e3ee66f35f7e2d5e1220cd883a9d528fac
sanbi-uwc
parents:
diff changeset
18 </data_table>
6cddc1a6e282 planemo upload for repository https://github.com/zipho/data_manager_novocraft_index_builder commit 3a0b36e3ee66f35f7e2d5e1220cd883a9d528fac
sanbi-uwc
parents:
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19 </data_manager>
6cddc1a6e282 planemo upload for repository https://github.com/zipho/data_manager_novocraft_index_builder commit 3a0b36e3ee66f35f7e2d5e1220cd883a9d528fac
sanbi-uwc
parents:
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20 </data_managers>