Mercurial > repos > sanbi-uwc > data_manager_novoalign_index_builder

changeset 7:920b672f75a8 draft

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planemo upload for repository https://github.com/zipho/data_manager_novoalign_index_builder commit 2adcb39fe5b214ef3e8f0cc6bc11257fd2520bf2
author sanbi-uwc
date Fri, 04 Mar 2016 04:04:51 -0500
parents 028bec15ea71
children 4f4f4cd55125
files data_manager_conf.xml
diffstat 1 files changed, 7 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager_conf.xml	Fri Mar 04 03:41:08 2016 -0500
+++ b/data_manager_conf.xml	Fri Mar 04 04:04:51 2016 -0500
@@ -6,15 +6,15 @@
                 <column name="value" />
                 <column name="dbkey" />
                 <column name="name" />
-                <column name="path" output_ref="out_file" >
-                    <move type="file">
-                        <source>${path}</source>
-                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/novocraft_index/${path}</target>
+                <column name="path" output_ref="out_file">
+                    <move type="directory" relative_symlinks="True">
+                        <!-- no need to set source, gets taken from out_dir.extra_files_path -->
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/novocraft_index/${value}</target>
                     </move>
-                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/novocraft_index/${path}</value_translation>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/{$dbkey}/novocraft_index/${value}/${path}</value_translation>
                     <value_translation type="function">abspath</value_translation>
-                </column> 
+                </column>
             </output>
-        </data_table> 
+        </data_table>
     </data_manager>
 </data_managers>