Mercurial > repos > sanbi-uwc > data_manager_fetch_refseq

diff data_manager_conf.xml @ 13:dd9f976e9d97 draft

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planemo upload for repository https://github.com/pvanheus/refseq_fasta_data_manager commit 687fed3e6ffed745baf5d6241ee82f2bd9671256-dirty
author sanbi-uwc
date Sat, 08 Sep 2018 03:08:02 -0400
parents 97bf61f2fdae
children 1977080c99ec
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line diff
--- a/data_manager_conf.xml	Fri Sep 07 20:14:04 2018 -0400
+++ b/data_manager_conf.xml	Sat Sep 08 03:08:02 2018 -0400
@@ -9,7 +9,10 @@
                 <column name="path" output_ref="output_file" >
                     <move type="file">
                         <source>${path}</source>
-                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">refseq/${dbkey}/${value}.fasta</target>
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}"><![CDATA[
+                        #set release_num = str($dbkey).split()[1]                        
+                        refseq/${release_num}/${value}.fasta
+                        ]]></target>
                     </move>
                     <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/refseq/${dbkey}/${value}.fasta</value_translation>
                     <value_translation type="function">abspath</value_translation>