comparison data_manager_conf.xml @ 13:dd9f976e9d97 draft

planemo upload for repository https://github.com/pvanheus/refseq_fasta_data_manager commit 687fed3e6ffed745baf5d6241ee82f2bd9671256-dirty

12:45baee31ca39

                <column name="dbkey" />
                <column name="name" />
                <column name="path" output_ref="output_file" >
                    <move type="file">
                        <source>${path}</source>
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">refseq/${dbkey}/${value}.fasta</target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/refseq/${dbkey}/${value}.fasta</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>

13:dd9f976e9d97

                <column name="dbkey" />
                <column name="name" />
                <column name="path" output_ref="output_file" >
                    <move type="file">
                        <source>${path}</source>
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}"><![CDATA[
                        #set release_num = str($dbkey).split()[1]                        
                        refseq/${release_num}/${value}.fasta
                        ]]></target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/refseq/${dbkey}/${value}.fasta</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>