Mercurial > repos > sanbi-uwc > confil

changeset 9:3365813ad7f5 draft

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planemo upload for repository https://github.com/COMBAT-TB/confil commit 614c517608ec76c66abd8e8096a6b3ef2d83e605
author sanbi-uwc
date Fri, 08 Mar 2019 02:27:28 -0500
parents 3892ea8ad1ad
children 2cde7c81c694
files confil.xml
diffstat 1 files changed, 2 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/confil.xml	Thu Mar 07 08:24:42 2019 -0500
+++ b/confil.xml	Fri Mar 08 02:27:28 2019 -0500
@@ -1,14 +1,12 @@
-<tool id="confil" name="Contamination Filter (confil)" version="@VERSION@+galaxy1">
+<tool id="confil" name="Contamination Filter (confil)" version="@VERSION@+galaxy2">
     <macros>
         <token name="@VERSION@">0.1.3</token>
     </macros>
     <requirements>
         <requirement type="package" version="@VERSION@">confil</requirement>
+        <requirement type="package" version="7.0">click</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
-        ln -s \$(which kraken2) \$(pwd)/kraken2 && 
-        PATH=\$(pwd):\$PATH && export PATH &&
-
         #set $input_type = $input_type_conditional.input_type
         #import re