Mercurial > repos > sanbi-uwc > build_ctb_gene
changeset 31:bcf4f741b94f draft
planemo upload for repository https://github.com/SANBI-SA/tools-sanbi-uwc.git commit ea7a94d6a0aa64dfc8f3a11ac977c39d57bba3e3
| author | sanbi-uwc |
|---|---|
| date | Mon, 23 May 2016 09:20:36 -0400 |
| parents | 60aedbda386d |
| children | 9e33d452ad8c |
| files | build_ctb_gene.py |
| diffstat | 1 files changed, 2 insertions(+), 3 deletions(-) [+] |
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--- a/build_ctb_gene.py Mon May 23 07:39:24 2016 -0400 +++ b/build_ctb_gene.py Mon May 23 09:20:36 2016 -0400 @@ -107,12 +107,11 @@ ctb_gene_runner.docker_run() # get the port of the docker container - cmd_str = 'docker inspect --format=\'{{(index (index .NetworkSettings.Ports "7474/tcp") 0).HostPort}}\' {}'.format( - ctb_gene_runner.docker_instance_name) + cmd_str = "docker inspect --format='{{(index (index .NetworkSettings.Ports \"7474/tcp\") 0).HostPort}}' %s" % ctb_gene_runner.docker_instance_name # TODO: randomise the ports/names/mount_point and use the autokill image export_cmd = 'export NEO4J_REST_URL=http://localhost:{}/db/data/'.format( - inspect_docker(cmd_str)[:-1]) + inspect_docker(cmd_str)[:-1]) try: os.system(export_cmd) except (OSError, ValueError), e: