Mercurial > repos > sanbi-uwc > build_ctb_gene

changeset 2:b5a790340458 draft

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planemo upload for repository https://github.com/SANBI-SA/tools-sanbi-uwc.git commit 6008c770bc6e25fffa56516d0546d63640eb7350
author sanbi-uwc
date Tue, 10 May 2016 14:31:12 -0400
parents b07066519096
children 65558b5914fc
files build_ctb_gene.xml
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/build_ctb_gene.xml	Tue May 10 09:14:00 2016 -0400
+++ b/build_ctb_gene.xml	Tue May 10 14:31:12 2016 -0400
@@ -9,18 +9,18 @@
         <exit_code range="1:" />
     </stdio>
     <command>
-        export NEO4J_REST_URL=http://${neo4j_db_username}:${neo4j_db_password}@${neo4j_db_url}:${neo4j_db_port}/db/data/
+        export NEO4J_REST_URL=http://${neo4j_db_username}:${neo4j_db_password}@${neo4j_db_url}:${neo4j_db_port}/db/data/ &&
         build_ctb_gene goterms ${input_file}
     </command>
     <inputs>
         <param name="input_file" type="data" format="gff" label="Choose the GFF file" help="Specify the GFF file" optional="False" />
-        <param type="text" name="neo4j_db_url" value="http://" label="Neo4j database URL" optional="False" />
+        <param type="text" name="neo4j_db_url" value="" label="Neo4j database URL" optional="False" />
         <param type="text" name="neo4j_db_port" value="" label="Neo4j database port" optional="False" />
         <param type="text" name="neo4j_db_username" value="" label="Neo4j database username" optional="False" />
         <param type="text" name="neo4j_db_password" value="" label="Neo4j database password" optional="False" />
     </inputs>
     <outputs>
-        <data format="txt" name="build_cbt_gene_results" label="Build_ctb_gene: output"/>
+        <data format="txt" name="out_file" />
     </outputs>
     <help>Help!</help>
     <citations>