Mercurial > repos > saketkc > polyphen2

comparison polyphen2_web/test-data/polyphen_output_log.tsv @ 3:3c40b02934ad draft default tip

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author saketkc
date Tue, 07 Oct 2014 18:56:07 -0400
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2:f8f4ad14f5a6 3:3c40b02934ad
1 ===========================
2 Stage 1/7: Validating input
3 ===========================
4 No errors
5
6 ===============================
7 Stage 2/7: Mapping genomic SNPs
8 ===============================
9 No errors
10
11 ============================
12 Stage 3/7: Collecting output
13 ============================
14 No errors
15
16 ===============================================
17 Stage 4/7: Building MSA and annotating proteins
18 ===============================================
19 (XRCC1_HUMAN:399:R/Q) WARNING: find_gene: Swapped codons (CAG>CGG) in uc002owt.2 nucleotide sequence at position: 1195
20 (XRCC1_HUMAN:399:R/Q) WARNING: Replaced reference AA residue (Q) with (R) in uc002owt.2 protein sequence at position: 399
21 Total errors/warnings: 2
22
23 ============================
24 Stage 5/7: Collecting output
25 ============================
26 No errors
27
28 =====================
29 Stage 6/7: Predicting
30 =====================
31 No errors
32
33 =============================
34 Stage 7/7: Generating reports
35 =============================
36 No errors