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annotate chasm_webservice/test-data/chasm_output_codons.tabular @ 9:473d1c2ca65d draft default tip

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author saketkc
date Tue, 07 Oct 2014 18:32:57 -0400
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1 #Amino Acid Level Analysis Report
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2 #2014-08-28 22:54:22.487446
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3 #CRAVAT version: 3.1
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4 #Analysis done at http://www.cravat.us.
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5 #Input file: dataset_1.dat
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6 #This report shows analysis results at amino acid level.
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7 #Input coordinate was hg19 genomic.
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8 #For more information on CRAVAT, visit http://www.cravat.us.
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9 #
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10 Transcript Amino acid position Sequence Ontology Reference amino acid(s) Protein sequence change HUGO symbol Other transcripts Occurrences in study [amino acid change] Transcript in COSMIC Protein sequence change in COSMIC Occurrences in COSMIC [amino acid change] Occurrences in COSMIC by primary sites [amino acid change]
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11 NM_021090.3 1198 MS N I MTMR3 NM_153051.2:aAc>aTc:N1161I, NM_153050.2:aAc>aTc:N1170I, ENST00000323630:aAc>aTc:N1062I, ENST00000351488:aAc>aTc:N1161I, ENST00000333027:aAc>aTc:N1170I, ENST00000406629:aAc>aTc:N1170I, ENST00000401950:aAc>aTc:N1198I 1 0
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12 NM_001206998.1 637 MS H R ZNRF3 NM_032173.3:cAc>cGc:H537R, ENST00000406323:cAc>cGc:H537R, ENST00000332811:cAc>cGc:H537R, ENST00000402174:cAc>cGc:H537R, ENST00000544604:cAc>cGc:H637R 2 0
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13 NM_020831.3 648 MS S G MKL1 ENST00000396617:Agc>Ggc:S648G, ENST00000402042:Agc>Ggc:S598G, ENST00000407029:Agc>Ggc:S648G, ENST00000355630:Agc>Ggc:S648G 1 ENST00000355630 p.S648G (stomach 1) 1 stomach(1)
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14 NM_020831.3 396 MS A T MKL1 ENST00000396617:Gcc>Acc:A396T, ENST00000402042:Gcc>Acc:A346T, ENST00000407029:Gcc>Acc:A396T, ENST00000355630:Gcc>Acc:A396T 1 0