Mercurial > repos > saketkc > chasm_web

diff chasm_webservice/test-data/chasm_output_codons.tabular @ 8:47ca5fb1b3f7 draft

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author saketkc
date Wed, 16 Jul 2014 20:31:41 -0400
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children 473d1c2ca65d
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/chasm_webservice/test-data/chasm_output_codons.tabular	Wed Jul 16 20:31:41 2014 -0400
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+#Amino Acid Level Analysis Report
+#2014-07-15 03:23:43.460539
+#Analysis done at http://www.cravat.us.
+#Input file: dataset_346.dat
+#This report shows analysis results at amino acid level.
+#Input coordinate was hg19 genomic.
+#For more information on CRAVAT, visit http://www.cravat.us.
+#
+Transcript	Amino acid position	Sequence Ontology	Reference amino acid(s)	Alternate amino acid(s)	HUGO symbol	Other transcripts	Occurrences in study [amino acid change]	Transcript in COSMIC	Protein sequence change in COSMIC	Occurrences in COSMIC [amino acid change]	Occurrences in COSMIC by primary sites [amino acid change]
+NM_021090.3	1198	MS	N	I	MTMR3	NM_153051.2:aAc>aTc:N1161I, NM_153050.2:aAc>aTc:N1170I, ENST00000323630:aAc>aTc:N1062I, ENST00000351488:aAc>aTc:N1161I, ENST00000333027:aAc>aTc:N1170I, ENST00000406629:aAc>aTc:N1170I, ENST00000401950:aAc>aTc:N1198I	1			0	
+NM_001206998.1	637	MS	H	R	ZNRF3	NM_032173.3:cAc>cGc:H537R, ENST00000406323:cAc>cGc:H537R, ENST00000332811:cAc>cGc:H537R, ENST00000402174:cAc>cGc:H537R, ENST00000544604:cAc>cGc:H637R	2			0	
+NM_020831.3	648	MS	S	G	MKL1	ENST00000396617:Agc>Ggc:S648G, ENST00000402042:Agc>Ggc:S598G, ENST00000407029:Agc>Ggc:S648G, ENST00000355630:Agc>Ggc:S648G	1			0	
+NM_020831.3	396	MS	A	T	MKL1	ENST00000396617:Gcc>Acc:A396T, ENST00000402042:Gcc>Acc:A346T, ENST00000407029:Gcc>Acc:A396T, ENST00000355630:Gcc>Acc:A396T	1			0