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1 #Gene Level Analysis Report
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2 #2014-07-15 03:23:43.461186
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3 #Analysis done at http://www.cravat.us.
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4 #Input file: dataset_346.dat
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5 #This report shows analysis results at gene level.
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6 #The composite p-value (Stouffer's combined p-value) and composite FDR of a gene show how probable it is to get the same p-value distribution for the gene as that obtained from the input variants by chance.
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7 #Input coordinate was hg19 genomic.
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8 #Tissue type for CHASM analysis: Other
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9 #For more information on CRAVAT, visit http://www.cravat.us.
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10 #
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11 HUGO symbol Best driver score from representative transcripts Composite p value Composite FDR Occurrences in study [gene mutated] Occurrences in COSMIC [gene mutated] Occurrences in COSMIC by primary sites [gene mutated] MuPIT link
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12 MTMR3 0.6 0.3364 0.55 1 102 upper_aerodigestive_tract(2);large_intestine(24);haematopoietic_and_lymphoid_tissue(5);endometrium(12);urinary_tract(4);oesophagus(1);liver(3);skin(17);lung(17);ovary(5);prostate(2);kidney(4);breast(6
)
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13 ZNRF3 0.514 0.171 0.55 2 73 upper_aerodigestive_tract(2);large_intestine(19);autonomic_ganglia(1);haematopoietic_and_lymphoid_tissue(2);endometrium(12);urinary_tract(2);lung(16);liver(5);skin(1);oesophagus(3);ovary(2);NS(1);prostate(2);kidney(3);breast(2
)
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14 MKL1 0.728 0.793956248886469 1 2 68 large_intestine(15);stomach(2);central_nervous_system(1);haematopoietic_and_lymphoid_tissue(3);endometrium(13);urinary_tract(1);lung(19);breast(3);skin(1);ovary(5);kidney(4);liver(1
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