Mercurial > repos > ryotas > cypher_tools

annotate tab2graph.xml @ 0:aa7a5cc0f59b default tip

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author ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
date Tue, 30 Dec 2014 18:27:26 +0900
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ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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1 <tool id="tab2graph" name="Tab-to-Graph" version="0.2">
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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2 <description>Converter 2</description>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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3 <command interpreter="python">
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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4 tab2graph.py $input_file $h $output_file_n $output_file_r '$def_n' '$def_r'
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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5 </command>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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6 <inputs>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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7 <param name="input_file" type="data" format="tabular" label="Input File (tabular)"/>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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8 <param name="h" label="Check to neglect the first row of the input." type="boolean" truevalue="1" falsevalue="0" checked="False"/>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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9 <param name="def_n" type="text" area="true" size="10x70" label="Definition for Nodes">
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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10 <sanitizer>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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11 <valid initial="string.printable">
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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12 <remove value="&apos;"/>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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13 </valid>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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14 <mapping initial="none">
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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15 <add source="&apos;" target="__sq__"/>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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16 </mapping>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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17 </sanitizer>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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18 </param>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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19 <param name="def_r" type="text" area="true" size="10x70" label="Definition for Relations">
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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20 <sanitizer>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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21 <valid initial="string.printable">
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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22 <remove value="&apos;"/>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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23 </valid>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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24 <mapping initial="none">
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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25 <add source="&apos;" target="__sq__"/>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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26 </mapping>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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27 </sanitizer>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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28 </param>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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29 </inputs>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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30 <outputs>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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31 <data name="output_file_n" format="tabular" label="${tool.name} on ${on_string} (node)"/>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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32 <data name="output_file_r" format="tabular" label="${tool.name} on ${on_string} (relation)"/>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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33 </outputs>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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34 <help>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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35 **What it does**
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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36 </help>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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37 </tool>