Mercurial > repos > rnateam > mirdeep2
changeset 0:6d5125a67880 draft
Uploaded
| author | rnateam |
|---|---|
| date | Mon, 26 Jan 2015 09:56:49 -0500 |
| parents | |
| children | ea20fb8d849e |
| files | mirdeep2.xml test-data/cel_cluster.fa test-data/mature_ref_other_species.fa test-data/mature_ref_this_species.fa test-data/output.mrd test-data/precursors_ref_this_species.fa test-data/reads_collapsed.fa test-data/reads_collapsed_vs_genome.arf test-data/result.bed test-data/result.csv test-data/survey.csv tool_dependencies.xml |
| diffstat | 12 files changed, 6769 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/mirdeep2.xml Mon Jan 26 09:56:49 2015 -0500 @@ -0,0 +1,196 @@ +<tool id="rbc_mirdeep2" name="MiRDeep2" version="2.0.0"> + <description> +<![CDATA[ +identification of novel and known miRNAs +]]> + </description> + <requirements> + <requirement type="package" version="2.0">mirdeep2</requirement> + <requirement type="package" version="2.0">mirdeep2_quantifier</requirement> + <requirement type="package" version="0.12.7">bowtie</requirement> + <requirement type="package" version="5.18.1">perl</requirement> + <requirement type="package" version="1.8.5">vienna_rna</requirement> + <requirement type="package" version="2.023">pdf_api2</requirement> + <requirement type="package" version="2.0">randfold</requirement> + </requirements> + + <command> +<![CDATA[ + miRDeep2.pl + + $reads + $genome + $mappings + + #if $mature_this + $mature_this + #else + none + #end if + + #if $mature_other + $mature_other + #else + none + #end if + + #if $precursors + $precursors + #else + none + #end if + + #if $species.value != 'all' + -t $species + #end if + + #if $star_sequences + -s $star_sequences + #end if + + #if $min_read_stack + -a $min_read_stack + #end if + + #if $min_read_stack + -a $min_read_stack + #end if + + -g $max_precursors_analyze + -b $min_score_cutoff + $disable_randfold + + ; cp result*.bed result.bed 2> /dev/null + ; cp result*.csv result.csv 2> /dev/null + ; cp mirdeep_runs/run*/output.mrd . 2> /dev/null + ; cp mirdeep_runs/run*/survey.csv . 2> /dev/null + + ## html output + ; + cp result*.html $html 2> /dev/null + + ## move pdf directory to be accessible from the new index.html + ; + mkdir -p $html.files_path 2> /dev/null + ; + cp -R pdfs* $html.files_path 2> /dev/null + +]]> + </command> + <stdio> + <!-- Anything other than zero is an error --> + <exit_code range="1:" /> + <exit_code range=":-1" /> + <!-- In case the return code has not been set propery check stderr too --> + <regex match="Error:" /> + <regex match="Exception:" /> + </stdio> + <inputs> + <param name="reads" format="fasta" type="data" label="Collapsed deep sequencing reads"> + <help> +<![CDATA[ +Reads in fasta format. The identifier should contain a prefix, a running +number and a '_x' to indicate the number of reads that have this sequence. +There should be no redundancy in the sequences. +]]> + </help> + </param> + <param name="genome" format="fasta" type="data" label="Genome" help="Genome contigs in fasta format. The identifiers should be unique."/> + <param name="mappings" format="tabular" type="data" label="Mappings" help="Reads mapped against genome. Mappings should be in ARF format."/> + <param name="mature_this" optional="true" format="fasta" type="data" label="Mature miRNA sequences for this species" + help="miRBase miRNA sequences in fasta format. These should be the known mature sequences for the species being analyzed."/> + <param name="mature_other" optional="true" format="fasta" type="data" label="Mature miRNA sequences for related species"> + <help> +<![CDATA[ +miRBase miRNA sequences in fasta format. These should be the pooled known +mature sequences for 1-5 species closely related to the species being analyzed. +]]> + </help> + </param> + <param name="precursors" optional="true" format="fasta" type="data" label="Precursor sequences" + help="miRBase miRNA precursor sequences in fasta format. These should be the known precursor sequences for the species being analyzed."/> + + <param name="species" type="select" label="Search in species" help="If not searching in a specific species all species in your files will be analyzed. (-t)"> + <option value="all">All species</option> + <option value="tni">tetraodon</option> + <option value="dps">d.pseudoobscura</option> + <option value="dya">d.yakuba</option> + <option value="ame">a.mellifera</option> + <option value="dmo">d.mojavensis</option> + <option value="cel">worm</option> + <option value="aga">a.gambiae</option> + <option value="cbr">c.briggsae</option> + <option value="cin">c.intestinalis</option> + <option value="mmu">mouse</option> + <option value="xtr">x.tropicalis</option> + <option value="eca">horse</option> + <option value="cfa">dog</option> + <option value="fru">fugu</option> + <option value="bta">cow</option> + <option value="der">d.erecta</option> + <option value="dgr">d.grimshawi</option> + <option value="gga">chicken</option> + <option value="spu">s.purpuratus</option> + <option value="bfl">lancelet</option> + <option value="ptr">chimp</option> + <option value="dse">d.sechellia</option> + <option value="dpe">d.persimilis</option> + <option value="dvi">d.virilis</option> + <option value="rno">rat</option> + <option value="dme">d.melanogaster</option> + <option value="lca">cat</option> + <option value="sja">c.japonica</option> + <option value="dan">d.ananassae</option> + <option value="hsa">human</option> + <option value="dsi">d.simulans</option> + </param> + <param name="star_sequences" format="fasta" type="data" optional="true" label="Star sequences" help="From miRBase in fasta format (optional) (-s)"/> + + <param name="min_read_stack" optional="true" type="integer" minvalue="0" label="Minimum read stack height"> + <help> +<![CDATA[ +minimum read stack height that triggers analysis. Using this option disables +automatic estimation of the optimal value and all detected precursors are analyzed. (-a) +]]> + </help> + </param> + <param name="max_precursors_analyze" type="integer" value="50000" label="Maximum precursors" + help="Maximum number of precursors to analyze when automatic excision gearing is used. If set to -1 all precursors will be analyzed. (-g)."/> + <param name="min_score_cutoff" type="integer" value="0" label="Minimum miRNA score" + help="Minimum score cut-off for predicted novel miRNAs to be displayed in the overview table. (-b)"/> + <param name="disable_randfold" type="boolean" truevalue="-c" falsevalue="" label="Disable randfold analysis" help="(-c)"/> + </inputs> + <outputs> + <data name="tab_results" format="tabular" from_work_dir="result.csv" label="Tabular output of ${tool.name} on ${on_string}"/> + <data format="html" name="html" label="${tool.name} on ${on_string} (html report)"/> + <data name="pred_acc" format="tabular" from_work_dir="survey.csv" label="Prediction accuracy output of ${tool.name} on ${on_string}"/> + <data name="bed_out" format="bed" from_work_dir="result.bed" label="Bed output of ${tool.name} on ${on_string}"/> + <data name="mrd_out" format="txt" from_work_dir="output.mrd" label="Text output of ${tool.name} on ${on_string}"/> + </outputs> + <tests> + <test> + <param name="reads" value="reads_collapsed.fa"/> + <param name="genome" value="cel_cluster.fa"/> + <param name="mappings" value="reads_collapsed_vs_genome.arf"/> + <param name="mature_this" value="mature_ref_this_species.fa"/> + <param name="mature_other" value="mature_ref_other_species.fa"/> + <param name="precursors" value="precursors_ref_this_species.fa"/> + + <output name="tab_results" file="result.csv" compare="sim_size"/> + <output name="prec_acc" file="survey.csv" compare="sim_size"/> + <output name="bed_out" file="result.bed" compare="sim_size"/> + <output name="mrd_out" file="output.mrd" compare="sim_size"/> + </test> + </tests> + <help> +<![CDATA[ +**What MiRDeep2 does** + +MiRDeep2 is a software package for identification of novel and known miRNAs in deep sequencing data. Furthermore, it can be used for miRNA expression profiling across samples. +]]> + </help> + <citations> + <citation type="doi">10.1093/nar/gkr688</citation> + <citation type="doi">10.1002/0471250953.bi1210s36</citation> + </citations> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cel_cluster.fa Mon Jan 26 09:56:49 2015 -0500 @@ -0,0 +1,132 @@ +>chrII:11534525-11540624 +tccaaaatattagaggccccacgaaaaggggagcagaacgaaaaggggat +ctgcaaaaaggggatctgcgaaaaggggagatacgaaaaggggagatacg +aaaaggggagcaacgaaaaggggatctggcactgtgccaaacgctatttt +tctcaaagaaaacaatacaacgatgctccgatgttacgcgtcgcgtgttg +ttaagcgtatcttctagaagaaaatttcaaaaatcaacgtgcgttgcgtg +agaaaaattgcgttttgtgcgtttggcacagtgccagctccccttttcgt +tgctccccttttcgtatctccccttttcgtatctccccttttcgcagatc +ccctttttgcagatccccttttcgttctgctcccctcgtggggcctcaaa +taatattgtcaatggagcgcagttgcgcacaccgaaatacgcacgaaatt +tgaaattggcaggcctagaaagtctggatttaaaatatttatgcatatta +acctgagtttcggcatgtttagataaatttagattaaaatttattaaata +aaaatatttaaaatttattaaattcaacattatctttaattttacagaaa +taaaaaccaaaaaaccaacgaagtgtaacttttcgacaataaatatttat +aaattattcaattaattggaaatctatttatcacatctcatcgtgaacaa +gcacatggctaaacaatgcctcgactttatccacccatcctggatttttc +ctgttgaaaatcttcaaatccttcatagtctgctcaattgccttaacagc +cttttcccttttcacatccttcgtcaattcctcaaccatcgcctctacaa +gttgtgatcgtgaggccccttcaacgaatttcttgtccaatacatctctg +agctgaaaaataagtccctttattcatgtgcaccacctgccactcattca +ttttagatcctaatcctgtatttctctctctctctcactaatcgtcccgt +catatctgacccactataatgaggggaccaccactttgccccagatttcg +taatgagccaacatacactaggccctgttctagcacccccattgtgcatg +ggagacacatcgtctgttggttcgggtcagctgagatgacgtggcagatg +acgtcatgtttgttctctagcagatccctatcgtaaaataccgttctttg +ttcgtttatgagcacttcttgggaaacaagaagaatattagagaatattg +gattttaggaaatttcttgaccctaataatatgtatctcatggggctaat +tacgaaagatttagagctcactaaagcagatgtggataagctggaactat +agtcaattctcacgagatattattattagcttactcgttgaatttgatgc +cgtgttaggtagaagccgagaacacgatgaaccttggaagttatgtagtc +gagttttctggaagaaaaagtatatatagtttgataaaaagttacgtcat +aagttattggtcccgagtgtgtacactagaaacttgcgcaatcagttggt +caggtggtctaggacctttacatgtaatataattcattggtttgttgctc +tagatctcaaagaatatggttttcctgctgagaaacaaaatttttttttc +aaatgttcgcgatattatacgatttttttgcgctgaaaaatacggtatcc +ggactcgacacgacagtttttcaataaattcggaaaggtacatatgcgcc +tttgaagagtactgtaattttaaacatttgttgatgcagtaaatattctc +acggatttttagaggtttttttttgaatatttatacagttatattagagt +taaaaaaataaatctatttttatcgaaatttatgaaaaatctactcccca +gaaacaaagtttgaatttacttaaaatgtatgtgcgcctttttaaattca +acaaaaatttatcaaattttgtctttttaatcacttttacttttttttcg +aaaaaaaaaaaaactttaaaaacaccgaaaattaaaatttttaattaccg +taatcctttaaaggcgcacacctctttttcgcaatcataaaaatttacag +gcacagaatttcctactgtaacgtgttttctcgatagaaacgtttctcca +aatcgaaatttttattagcaatcatcaattcgtcatgtttctgtgctgga +gcacattgttatgcagtgctcatgaatattcacagttgaaaatcgaattt +ttttttcttatttttattaacttctctcctcactcaagtgcaatctcatt +tcggcggaacgatgaaagcggactcgtttgaaacggattacactgctggc +tggctccatcttttttatttctggtttttttcccgacacgggaggtcatc +cgtccacgtcttcaatcttattcgcttctccttctatctatctctcttcc +aaaaaaatggaacagattgtccgccttctactttccgcatgcgcctattc +tagacatcgagaagaagcgagagaatccgaaaaactccgccgtccggcgc +ctagcgttcatcccgtcgcatccaatttccttcacccctgtctccagtct +ctaatctgtgtttcccagaccttctccttcttcttctcccctctttcttc +cctttcttttctacgattcctagacctgcccggttgaccatcgggcccac +catttatcgagcgcgtccgtctgttcgttgctgtgagcgcgcgcgcgcga +gcgcacactgcacaccatttgaccgcaacgagccgagagagtgtgtgaaa +tgaagagacgccgagtggacacgttgctctacaccaaacgcgctacacca +aatgggcggagacccaatggtgcaccaagtcagcagtataaaaggaatgg +aaatggtccattcagtcatcagttgtttttttattttctcttttctccca +tcactttctcccttcttcccctctcctaatttccattcccaactattatt +ctcggatcagatcgagccattgctggtttcttccacagtggtactttcca +ttagaactatcaccgggtggaaactagcagtggctcgatcttttccactt +gctccaccgctgtcggggaaccgcgccaattttcgcttcagtgctagacc +atccaaagtgtctatcaccgggtgaaaattcgcatgggtccccgacgcgg +aaagataaaatatcttaaaatcgattctagaaacccttggaccagtgtgg +gtgtccgttgcggtgctacattctctaatctgtatcaccgggtgaacact +tgcagtggtcctcgtggtttctctgtgagccaggtcctgttccggttttt +tccgtggtgataacgcatccaaaagtctctatcaccgggagaaaaactgg +agtaggacctgtgactcattccgatttctggagttttcccctacattcta +ccattcagctactgattattgaattcctgatataccgagagcccagctga +tttcgtcttggtaataagctcgtcattgagattatcaccgggtgtaaatc +agcttggctctggtgtctccgaacctcctgtccgcacctcagtggatgta +tgccatgatgataagatatcagaaatcctatcaccgggtgtacatcagct +aaggtgcgggtacaggtgcatttgatatcaaggtgagttatttttaagtg +ggtcccagagaccttggtggtttttctctgcagtgatagatacttctaac +aactcgctatcaccgggtgaaaaatcacctaggtctggagcctcctgctc +tttttttgctgtttttaaacttaaacttaaaactaacactttatcaaaat +aaagtcttccaaaatcttttttctgatctgccggaagactttccatgaat +ttgtccaaaactcgttgcactttatcctcgtcgtaatcatttgacaccat +atctttggataactagaataattgaacattggtttaaaaaaattctctca +aaaaaaaaatcacaaacctgatgaattttagcctcatctatagcagtatc +tgcgagaagaatcgtaagattcattgataattctatatattttccaataa +ttttatccgaagctggatgtgaagtttctacagtacctccgtggcataat +actacaatggaagcaaaaagagcgacaattaggatcgtcattttagtgga +gaatgatgaattgacccggctctttgggggttggaggattcattttcccc +ttcaacaggtgctcaaataattaaagagaatagaaccgacgatatatggg +tcaaatgtttatacagttgtgctactaaacgtattgttacacgcgttatt +aataattagaattagaattatatcgttttgtacggattgagaatcccatt +tgggtcgaaaatgttcttgagcttctttgtcaaaagtcgttcttcaggat +cttttccgaatgtggagtacggtagcttcagttgaccgattccatgttca +gctgaaattgacccgccgtgatcgacaacccattcgtagaggaagggata +gagcctggaatttgaaattattaatagaattaaaattttataaaaaagaa +aaatctcgaaacttacaatttttcaagttcttcattgtgtttttcagatg +taatatttaaatgagtgtttccatctcccaaatgtccataagtgacaatt +cttttagccaaagaaccacatcgttccttcatcacattcgtcaattcata +ataattttccaatggtaaagaaacatcatgcttatagacatatccatctc +tggtaaccgccaatggtgcactttctctcaattgccacatcttcgtagct +tctgcagaagatccagcgagcactccgtcgataatcagattttttgagag +gcattcatccaaaaatgcgctcattttctccatatcgtgatcttcattgg +atcctgatgtttcgacaaggatcgagaatggggttggagcattcagtact +gggtgcaatcctagattcgttttcaaacattccatcgtagcatcgtcgag +aagttcgaaggaggaaaggatttcagtgaggctggattttgcaagcttca +gtacttcgcagcattttttgaaggattcgatgcctgaaaaaaattagaaa +ttgaaaaatttgaacccattatataaatattcaacctaccaagcatcgca +ctttgtacacttttcggtttaggaaccgcagtcattgtgacgcttgtgat +aacacccaactgcccttcacttcccaagaataggtgtggagtgtgcaaag +ttgtgttgtccttccgaatgcttgatcccaaatgtagaacagttccatgt +tcatcgggaagaaccaccgtgagcccgagaagatgtgcgtgaagacttcc +gtatcgaatcaaccgaatccctcctgcacacgtggcaatatttcctccaa +tctgacaggatcctttggctccgagatcaaaaggcatcatatatccgagt +tttgcaagtttgttgtccaagtcttccagaataaaaccagaatcacactt +gagaattcccattgtgtcgtcgaaagagaattgcttgttgattttattca +ttgatataacaacttcatcatgtactggaattgatccaccaacgagtcct +gtattccctccttgtgggactactgccaatttgttcttggagcaatacgc +caatattgcagaaacctcttcggtgctcttcgggtagaggacgacactgc +caggacctggaaattaaaacatttaatatttaaagtacctatttaatatt +aaataaacctaatcttaaaatacaaatacctttaaattggcctgtccaat +ctgtagtatgatttgtaatatcgtccttcttcactgcatcttgcccgaga +aaattctcaaatgccattaaatccgactgcatcacttttgcaaatccttc +atgtctggcggcaagaactgctgcgtagcttctagttggtcttctgattc +gtggcaagattttcagaaacatctgaattcagaaacttttcaaaaaataa +cttgaaacttcaaaagaaatagtaggagacaaagctcggctaggtgaccg + +>chrIII:2172325-2172669 +CAGGCAGTCAGTCAGTCTCTCTCCACTCACATTCAGTCAGTCAGTGACCA +TCACCAGGTTGTGTGTGAGCCCCTTCCATTATTCTTCTGAACCCCCCTCC +CAACGCGGGAAGACTCGCCGGCAATGACACTGGTTATCTTTTCCATCGTG +GAATGCCCCCCATTGATTTTTTCCCCTTTTCGGGGGGAAAAAATTGGAAA +CGAGAAAGGTATCGGGTGTCATAGCCGGCGTGATCATCTTCCTCAAGTAT +TCCTCTGCTGATTTCGATATTCGGAGGAGCTCGGAGGCTGTTCAGCTGTA +AAATTGGTTGATTAAGCTCAAAAATCGGCGTTAACGCGGCTTTCC
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/mature_ref_other_species.fa Mon Jan 26 09:56:49 2015 -0500 @@ -0,0 +1,490 @@ +>cbr-let-7 +TGAGGTAGTAGGTTGTATAGTT +>cbr-lin-4 +TCCCTGAGACCTCAAGTGTGA +>cbr-miR-1 +TGGAATGTAAAGAAGTATGTA +>cbr-miR-34 +AGGCAGTGTGGTTAGCTGGTTG +>cbr-miR-42 +CACCGGGTTAACATCTACAG +>cbr-miR-43 +TATCACAGTTTACTTGCTGTCGC +>cbr-miR-44 +TGACTAGAGACACATTCAGCT +>cbr-miR-45 +TGACTAGAGACACATTCAGCT +>cbr-miR-46 +TGTCATGGAGTCGCTCTCTTCA +>cbr-miR-47 +TGTCATGGAGGCGCTCTCTTCA +>cbr-miR-48 +TGAGGTAGGCTCAGTAGATGCGA +>cbr-miR-49 +AAGCACCACGAGAAGCTGCAGA +>cbr-miR-50 +TGATATGTCTGATATTCTTGGGTT +>cbr-miR-52 +CACCCGTACATATGTTTCCGTGCT +>cbr-miR-57 +TACCCTGTAGATCGAGCTGTGTGT +>cbr-miR-58 +TGAGATCGTTCAGTACGGCAAT +>cbr-miR-60 +TATTATGCACATTTTCTAGTCCA +>cbr-miR-67 +TCACAACCTCCTAGAAAGAGTAGA +>cbr-miR-71 +TGAAAGACATGGGTAGTGA +>cbr-miR-73 +TGGCAAGATGTTGGCAGTTCAGT +>cbr-miR-74 +TGGCAAGAAATGGCAGTCTAGA +>cbr-miR-75 +TTAAAGCTACCAACCGCCTTCA +>cbr-miR-77 +TTCATCAGGCCATAGCTGTCCA +>cbr-miR-79 +ATAAAGCTAGGTTACCAAAGCT +>cbr-miR-80 +TGAGATCATTAGTTGAAAGCCGA +>cbr-miR-81 +TGAGATCATCGTGAAAGCTAGT +>cbr-miR-82 +TGAGATCATCGTGAAAGCCAGT +>cbr-miR-85 +TACAAAGTATTTGAAAAGGCGTGC +>cbr-miR-86 +TAAGTGAATGCTTTGCCACAGTC +>cbr-miR-87 +GTGAGCAAAGTTTCAGGTGT +>cbr-miR-90 +TGATATGTTGTTTGAATGCCCC +>cbr-miR-124 +TAAGGCACGCGGTGAATGCCA +>cbr-miR-228 +AATGGCACTGCATGAATTCACGG +>cbr-miR-230 +GTATTAGTTGTGCGACCAGGAAA +>cbr-miR-232 +TAAATGCATCTTAACTGCGGTGA +>cbr-miR-233 +TTGAGCAATGCGCATGTGCGGGA +>cbr-miR-234 +TTATTGCTCGAGAATACCCTT +>cbr-miR-236 +TAATACTGTCAGGTAATGACGCT +>cbr-miR-241 +TGAGGTAGGTGTGAGAAATGA +>cbr-miR-244 +TCTTTGGTTGTACAAAGTGGTATG +>cbr-miR-245 +ATTGGTCCCCTCCAAGTAGCTC +>cbr-miR-248 +TACACGTGCTCGGATAACGCTCA +>cbr-miR-250 +TCACAGTCAACTGTTGGCACGG +>cbr-miR-251 +TTAAGTAGTGGTGCCGCTCTTATT +>cbr-miR-252 +TAAGTAGTAGTGCCGCAGGTAAC +>cbr-miR-259 +AAATCTCATCCTAATCTGGTT +>cbr-miR-268 +GGCAAGAATTAGAAGCAGTTTTGGT +>cbr-miR-72 +AGGCAGATGTTGGCATAGC +>cbr-lsy-6 +TTTTGTATGAGACGCATTCCG +>cbr-miR-353 +CAAGTATCATGTGTTGGTATC +>cbr-miR-64 +CATGACACTGAAGCGTGTACGGA +>cbr-miR-231 +TAAGCTCGTGAACAACAGGCAGGA +>cbr-miR-356 +ATGAGCAACGCGAACAAATCC +>cbr-miR-83 +TAGCACCATATAAATTCAGTGT +>cbr-miR-246 +TTACATGTATTGGGTAGGAGCT +>cbr-miR-51 +TACCCGTAGCTCCTTGCCATGTT +>cbr-miR-357 +AAAATGCCAGTCATTGACGGA +>cbr-miR-253 +CACACCTCACTAACACTAACT +>cbr-miR-70 +TAATACGTGATTGGTGTTCCCAG +>cbr-miR-358 +CAATTGGTATCCTTAGTCGTGG +>cbr-miR-61 +TGACTAGAACCTTGACTCTGCTC +>cbr-miR-360 +TGACCGTAATCCCGTTCACAA +>cbr-miR-239a +TTTGTACTACAATTAGGTACTGG +>cbr-miR-249 +TCACAGGATTTTTGAGTGTTGC +>cbr-miR-240 +TACTGGCCTCCAAATTTTCGCT +>cbr-miR-254 +TGCAAATCTTTTGCAACTGTATA +>cbr-miR-239b +TTGTACTGCACAAAAGTACTG +>cbr-miR-62 +TGATATGTAATCTAGCTTACAG +>cbr-miR-55 +TACCCGTATATTTTTCTGCCGAG +>cbr-miR-84 +TGAGGTAGTTTGCAATGCTGTC +>cbr-miR-354 +ACCTTGTTTGTTGCTGCTCCT +>cbr-miR-35 +TCACCGGGTGAAAACTTGCAAG +>cbr-miR-36 +TCACCGGGTGAAAATTCGCAAT +>cbr-miR-38 +TCACCGGGAGACAACCTGGTAT +>cbr-miR-39 +TCACCGGGTGAAAAACGGTTAG +>cbr-miR-40 +TCACCGGGTGTCAATCAGCTAG +>cbr-miR-41 +TCACCGGGTGAAAAACTCCCA +>cbr-miR-355 +TTTGTTTTAGCCTGAGCTATG +>cbr-miR-784 +TGGCACAATACCTGTATGTAGA +>cbr-miR-785 +TAAGTGAATACTCTGTGTTGA +>cbr-miR-786 +TAATGCCCTGTACGAGATTTGGT +>cbr-miR-787 +TAAGCTCGTCTTAGTTTTCCTCT +>cbr-miR-788 +TCCGCTTCTCAATGCTCCATTTGCAA +>cbr-miR-789a +TCCCTGCCTGGGTCAAATGTTTT +>cbr-miR-789b +GCCCTGCCTGGGTCACCATGTGA +>cbr-miR-790 +CTTGGCACTCGCGAACACCGCG +>cbr-miR-791 +ATTGGCACTCCGCTGATTTGGTG +>cbr-miR-792 +TTGAAATTTTTTCTATTTTCGGT +>cbr-miR-235 +TATTGCACTTTCCCTGGCCAGA +>cbr-miR-242 +TTGCGTAGGCCTTTGTTTCGA +>cbr-miR-255 +AAACTGAAGAGATTTTTTACAG +>cbr-miR-359 +TCACTGGTTATCCTCTGTCGAA +>cbr-miR-392 +TATCATCGATCATGTGAGCTGT +>dme-miR-1 +TGGAATGTAAAGAAGTATGGAG +>dme-miR-2a +TATCACAGCCAGCTTTGATGAGC +>dme-miR-2b +TATCACAGCCAGCTTTGAGGAGC +>dme-miR-3 +TCACTGGGCAAAGTGTGTCTCA +>dme-miR-4 +ATAAAGCTAGACAACCATTGA +>dme-miR-5 +AAAGGAACGATCGTTGTGATATG +>dme-miR-6 +TATCACAGTGGCTGTTCTTTTT +>dme-miR-7 +TGGAAGACTAGTGATTTTGTTGT +>dme-miR-8 +TAATACTGTCAGGTAAAGATGTC +>dme-miR-9a +TCTTTGGTTATCTAGCTGTATGA +>dme-miR-10 +CAAATTCGGTTCTAGAGAGGTTT +>dme-miR-11 +CATCACAGTCTGAGTTCTTGC +>dme-miR-12 +TGAGTATTACATCAGGTACTGGT +>dme-miR-13a +TATCACAGCCATTTTGATGAGT +>dme-miR-13b +TATCACAGCCATTTTGACGAGT +>dme-miR-14 +TCAGTCTTTTTCTCTCTCCTA +>dme-miR-263a +GTTAATGGCACTGGAAGAATTCAC +>dme-miR-184 +TGGACGGAGAACTGATAAGGGC +>dme-miR-274 +TTTTGTGACCGACACTAACGGGTAAT +>dme-miR-275 +TCAGGTACCTGAAGTAGCGCGCG +>dme-miR-92a +CATTGCACTTGTCCCGGCCTAT +>dme-miR-219 +TGATTGTCCAAACGCAATTCTTG +>dme-miR-276a +TAGGAACTTCATACCGTGCTCT +>dme-miR-277 +TAAATGCACTATCTGGTACGACA +>dme-miR-278 +TCGGTGGGACTTTCGTCCGTTT +>dme-miR-133 +TTGGTCCCCTTCAACCAGCTGT +>dme-miR-279 +TGACTAGATCCACACTCATTAA +>dme-miR-33 +AGGTGCATTGTAGTCGCATTG +>dme-miR-280 +TGTATTTACGTTGCATATGAAATGATA +>dme-miR-281 +TGTCATGGAATTGCTCTCTTTGT +>dme-miR-282 +AATCTAGCCTCTACTAGGCTTTGTCTGT +>dme-miR-283 +TAAATATCAGCTGGTAATTCT +>dme-miR-284 +TGAAGTCAGCAACTTGATTCCAGCAATTG +>dme-miR-34 +TGGCAGTGTGGTTAGCTGGTTGTG +>dme-miR-124 +TAAGGCACGCGGTGAATGCCAAG +>dme-miR-79 +TAAAGCTAGATTACCAAAGCAT +>dme-miR-276b +TAGGAACTTAATACCGTGCTCT +>dme-miR-210 +TTGTGCGTGTGACAGCGGCTA +>dme-miR-285 +TAGCACCATTCGAAATCAGTGC +>dme-miR-100 +AACCCGTAAATCCGAACTTGTG +>dme-miR-92b +AATTGCACTAGTCCCGGCCTGC +>dme-miR-286 +TGACTAGACCGAACACTCGTGCT +>dme-miR-287 +TGTGTTGAAAATCGTTTGCAC +>dme-miR-87 +TTGAGCAAAATTTCAGGTGTG +>dme-miR-263b +CTTGGCACTGGGAGAATTCAC +>dme-miR-288 +TTTCATGTCGATTTCATTTCATG +>dme-miR-289 +TAAATATTTAAGTGGAGCCTGCGACT +>dme-bantam +TGAGATCATTTTGAAAGCTGATT +>dme-miR-303 +TTTAGGTTTCACAGGAAACTGGT +>dme-miR-31b +TGGCAAGATGTCGGAATAGCTG +>dme-miR-304 +TAATCTCAATTTGTAAATGTGAG +>dme-miR-305 +ATTGTACTTCATCAGGTGCTCTG +>dme-miR-9c +TCTTTGGTATTCTAGCTGTAGA +>dme-miR-306 +TCAGGTACTTAGTGACTCTCAA +>dme-miR-9b +TCTTTGGTGATTTTAGCTGTATG +>dme-let-7 +TGAGGTAGTAGGTTGTATAGT +>dme-miR-125 +TCCCTGAGACCCTAACTTGTGA +>dme-miR-307 +TCACAACCTCCTTGAGTGAG +>dme-miR-308 +AATCACAGGATTATACTGTGAG +>dme-miR-31a +TGGCAAGATGTCGGCATAGCTGA +>dme-miR-309 +GCACTGGGTAAAGTTTGTCCTA +>dme-miR-310 +TATTGCACACTTCCCGGCCTTT +>dme-miR-311 +TATTGCACATTCACCGGCCTGA +>dme-miR-312 +TATTGCACTTGAGACGGCCTGA +>dme-miR-313 +TATTGCACTTTTCACAGCCCGA +>dme-miR-314 +TATTCGAGCCAATAAGTTCGG +>dme-miR-315 +TTTTGATTGTTGCTCAGAAAGC +>dme-miR-316 +TGTCTTTTTCCGCTTACTGGCG +>dme-miR-317 +TGAACACAGCTGGTGGTATCCAGT +>dme-miR-318 +TCACTGGGCTTTGTTTATCTCA +>dme-miR-2c +TATCACAGCCAGCTTTGATGGGC +>dme-miR-iab-4-5p +ACGTATACTGAATGTATCCTGA +>dme-miR-iab-4-3p +CGGTATACCTTCAGTATACGTAAC +>dme-miR-iab-4as-5p +TTACGTATACTGAAGGTATACCG +>dme-miR-iab-4as-3p +GGATACATTCAGTATACGTTTA +>dme-miR-954 +TCTGGGTGTTGCGTTGTGTGT +>dme-miR-955 +CATCGTGCAGAGGTTTGAGTGTC +>dme-miR-190 +AGATATGTTTGATATTCTTGGTTG +>dme-miR-193 +TACTGGCCTACTAAGTCCCAAC +>dme-miR-956 +TTTCGAGACCACTCTAATCCATT +>dme-miR-957 +TGAAACCGTCCAAAACTGAGGC +>dme-miR-958 +TGAGATTCTTCTATTCTACTTT +>dme-miR-375 +TTTGTTCGTTTGGCTTAAGTTA +>dme-miR-959 +TTGTCATCGGGGGTATTATGAA +>dme-miR-960 +TGAGTATTCCAGATTGCATAGC +>dme-miR-961 +TTTGATCACCAGTAACTGAGAT +>dme-miR-962 +ATAAGGTAGAGAAATTGATGCTGTC +>dme-miR-963 +ACAAGGTAAATATCAGGTTGTTTC +>dme-miR-964 +TTAGAATAGGGGAGCTTAACTT +>dme-miR-932 +TCAATTCCGTAGTGCATTGCAG +>dme-miR-965 +TAAGCGTATAGCTTTTCCCCTT +>dme-miR-966 +TGTGGGTTGTGGGCTGTGTGG +>dme-miR-967 +AGAGATACCTCTGGAGAAGCG +>dme-miR-1002 +TTAAGTAGTGGATACAAAGGGCGA +>dme-miR-968 +TAAGTAGTATCCATTAAAGGGTTG +>dme-miR-969 +GAGTTCCACTAAGCAAGTTTT +>dme-miR-970 +TCATAAGACACACGCGGCTAT +>dme-miR-971 +TTGGTGTTACTTCTTACAGTGA +>dme-miR-972 +TGTACAATACGAATATTTAGGC +>dme-miR-973 +TGGTTGGTGGTTGAACTTCGATTTT +>dme-miR-974 +AAGCGAGCAAAGAAGTAGTATT +>dme-miR-975 +TAAACACTTCCTACATCCTGTAT +>dme-miR-976 +TTGGATTAGTTATCATCAATGC +>dme-miR-977 +TGAGATATTCACGTTGTCTAA +>dme-miR-978 +TGTCCAGTGCCGTAAATTGCAG +>dme-miR-979 +TTCTTCCCGAACTCAGGCTAA +>dme-miR-980 +TAGCTGCCTTGTGAAGGGCTTA +>dme-miR-981 +TTCGTTGTCGACGAAACCTGCA +>dme-miR-982 +TCCTGGACAAATATGAAGTAAAT +>dme-miR-983 +ATAATACGTTTCGAACTAATGA +>dme-miR-984 +TGAGGTAAATACGGTTGGAATTT +>dme-miR-927 +TTTAGAATTCCTACGCTTTACC +>dme-miR-985 +CAAATGTTCCAATGGTCGGGCA +>dme-miR-986 +TCTCGAATAGCGTTGTGACTGA +>dme-miR-987 +TAAAGTAAATAGTCTGGATTGATG +>dme-miR-988 +CCCCTTGTTGCAAACCTCACGC +>dme-miR-989 +TGTGATGTGACGTAGTGGAAC +>dme-miR-137 +TATTGCTTGAGAATACACGTAG +>dme-miR-990 +ATTCACCGTTCTGAGTTGGCC +>dme-miR-991 +TTAAAGTTGTAGTTTGGAAAGT +>dme-miR-992 +AGTACACGTTTCTGGTACTAAG +>dme-miR-929 +CTCCCTAACGGAGTCAGATTG +>dme-miR-993 +GAAGCTCGTCTCTACAGGTATCT +>dme-miR-994 +CTAAGGAAATAGTAGCCGTGAT +>dme-miR-995 +TAGCACCACATGATTCGGCTT +>dme-miR-996 +TGACTAGATTTCATGCTCGTCT +>dme-miR-252 +CTAAGTACTAGTGCCGCAGGAG +>dme-miR-997 +CCCAAACTCGAAGGAGTTTCA +>dme-miR-998 +TAGCACCATGAGATTCAGCTC +>dme-miR-999 +TGTTAACTGTAAGACTGTGTCT +>dme-miR-1000 +ATATTGTCCTGTCACAGCAGT +>dme-miR-1001 +TGGGTAAACTCCCAAGGATCA +>dme-miR-1003 +TCTCACATTTACATATTCACAG +>dme-miR-1004 +TCTCACATCACTTCCCTCACAG +>dme-miR-1005 +TCTGGAATCTTTAATTCGCAG +>dme-miR-1006 +TAAATTCGATTTCTTATTCATAG +>dme-miR-1007 +TAAGCTCAATTAACTGTTTGCA +>dme-miR-1008 +TCACAGCTTTTTGTGTTTACA +>dme-miR-1009 +TCTCAAAAATTGTTACATTTCAG +>dme-miR-1010 +TTTCACCTATCGTTCCATTTGCAG +>dme-miR-1011 +TTATTGGTTCAAATCGCTCGCAG +>dme-miR-1012 +TTAGTCAAAGATTTTCCCCATAG +>dme-miR-1013 +ATAAAAGTATGCCGAACTCG +>dme-miR-1014 +AAAATTCATTTTCATTTGCAG +>dme-miR-1015 +TCCTGGGACATCTCTCTTGCAG +>dme-miR-1016 +TTCACCTCTCTCCATACTTAG +>dme-miR-1017 +GAAAGCTCTACCCAAACTCATCC +>dme-miR-2279 +TTTCACGCGAAGATATTTATTT +>dme-miR-2280 +TCTTAGCTTGGCAATAAAATAT +>dme-miR-2281 +TATCTGTATCTGCAGTATTGC +>dme-miR-2282 +ATCGGTGAGCTAAAAATAGAAT +>dme-miR-2283 +GAAAATATCATGAATACGACAAT
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/mature_ref_this_species.fa Mon Jan 26 09:56:49 2015 -0500 @@ -0,0 +1,14 @@ +>cel-miR-36 +TCACCGGGTGAAAATTCGCATG +>cel-miR-37 +TCACCGGGTGAACACTTGCAGT +>cel-miR-38 +TCACCGGGAGAAAAACTGGAGT +>cel-miR-39 +TCACCGGGTGTAAATCAGCTTG +>cel-miR-40 +TCACCGGGTGTACATCAGCTAA +>cel-miR-41 +TCACCGGGTGAAAAATCACCTA +>cel-miR-229 +AATGACACTGGTTATCTTTTCCATCG
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/output.mrd Mon Jan 26 09:56:49 2015 -0500 @@ -0,0 +1,2108 @@ +>chrII:11534525-11540624_7 +score total 102170.8 +score for star read(s) 3.9 +score for read counts 102159.9 +score for mfe 2.4 +score for randfold 1.6 +score for cons. seed 3 +miRNA with same seed cbr-miR-35 +total read count 200394 +mature read count 200381 +loop read count 0 +star read count 13 +exp fffffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSSllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMffffffffffffffffff +obs fffffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSSllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMffffffffffffffffff +pri_seq caacuauuauucucggaucagaucgagccauugcugguuucuuccacagugguacuuuccauuagaacuaucaccggguggaaacuagcaguggcucgaucuuuuccacu +pri_struct ..............(((..(((((((((((((((((((((((.((.(.((((((.(((......))).)))))).))).)))))))))))))))))))))))..)))... #MM +seq_377956_x1 ...............................ugcugguuucuuccacagugg.......................................................... 0 +seq_377882_x1 ...............................ugAugguuucuuccacaguggu......................................................... 1 +seq_375231_x11 ...............................ugcugguuucuuccacaguggua........................................................ 0 +seq_377915_x1 ................................................................gaacuaucaccggguggaaacuagcag................... 0 +seq_378313_x1 ....................................................................Aaucaccggguggaaacuag...................... 1 +seq_378070_x1 ....................................................................Aaucaccggguggaaacuagc..................... 1 +seq_374207_x17 ....................................................................Aaucaccggguggaaacuagcag................... 1 +seq_365952_x99 ....................................................................Aaucaccggguggaaacuagcagu.................. 1 +seq_377777_x1 ....................................................................uCucaccggguggaaacuagcagu.................. 1 +seq_377818_x1 .....................................................................Cucaccggguggaaacuagca.................... 1 +seq_378115_x1 .....................................................................aucaccggguggaaacuagca.................... 0 +seq_377479_x2 .....................................................................aucaccggguggaaacuagcag................... 0 +seq_377175_x3 .....................................................................Cucaccggguggaaacuagcag................... 1 +seq_377327_x2 .....................................................................Uucaccggguggaaacuagcag................... 1 +seq_369310_x61 .....................................................................Cucaccggguggaaacuagcagu.................. 1 +seq_377793_x1 .....................................................................aucaccgggGggaaacuagcagu.................. 1 +seq_377962_x1 .....................................................................aucaAcggguggaaacuagcagu.................. 1 +seq_378051_x1 .....................................................................aucaccggguggaaaAuagcagu.................. 1 +seq_378323_x1 .....................................................................aucaccggguggaaacuagAagu.................. 1 +seq_371516_x35 .....................................................................aucaccggguggaaacuagcagu.................. 0 +seq_377055_x3 .....................................................................aucaccggguggaaacuagcagC.................. 1 +seq_377970_x1 .....................................................................aucaccggguggaaacuagcagG.................. 1 +seq_377511_x2 .....................................................................Uucaccggguggaaacuagcagu.................. 1 +seq_378079_x1 .....................................................................aucaccggguggaaacuagcaguA................. 1 +seq_377431_x2 .....................................................................aucaccggguggaaacuagcaguU................. 1 +seq_377752_x1 ......................................................................ucaccggguggaaaAuag...................... 1 +seq_377443_x2 ......................................................................ucaccgggCggaaacuag...................... 1 +seq_378226_x1 ......................................................................ucaccCgguggaaacuag...................... 1 +seq_377974_x1 ......................................................................ucaccgggGggaaacuag...................... 1 +seq_378168_x1 ......................................................................ucaUcggguggaaacuag...................... 1 +seq_377959_x1 ......................................................................ucaAcggguggaaacuag...................... 1 +seq_377875_x1 ......................................................................ucaccggguggaaaUuag...................... 1 +seq_377878_x1 ......................................................................ucaccggguCgaaacuag...................... 1 +seq_378112_x1 ......................................................................ucaccggguggaNacuag...................... 1 +seq_378013_x1 ......................................................................ucaccggguggaaacuaC...................... 1 +seq_366886_x88 ......................................................................ucaccggguggaaacuag...................... 0 +seq_377813_x1 ......................................................................ucaccgggCggaaacuagc..................... 1 +seq_377341_x2 ......................................................................ucaccggguggaaacuaCc..................... 1 +seq_378124_x1 ......................................................................Ccaccggguggaaacuagc..................... 1 +seq_378326_x1 ......................................................................ucaccgggugAaaacuagc..................... 1 +seq_377088_x3 ......................................................................ucaccgggGggaaacuagc..................... 1 +seq_378155_x1 ......................................................................ucaccgggugCaaacuagc..................... 1 +seq_377717_x2 ......................................................................ucaccggguggaaacuCgc..................... 1 +seq_377885_x1 ......................................................................ucaccggguggaCacuagc..................... 1 +seq_377957_x1 ......................................................................ucaccggguggGaacuagc..................... 1 +seq_376727_x4 ......................................................................ucaccggguggaNacuagc..................... 1 +seq_363229_x131 ......................................................................ucaccggguggaaacuagc..................... 0 +seq_377513_x2 ......................................................................ucacAggguggaaacuagc..................... 1 +seq_378006_x1 ......................................................................ucaAcggguggaaacuagc..................... 1 +seq_377383_x2 ......................................................................ucaccggguggaaaGuagc..................... 1 +seq_377539_x2 ......................................................................ucaccggguggaaacuagU..................... 1 +seq_377451_x2 ......................................................................ucaccggguggaaacuagA..................... 1 +seq_372840_x25 ......................................................................ucaccgggCggaaacuagca.................... 1 +seq_377947_x1 ......................................................................ucGccggguggaaacuagca.................... 1 +seq_376538_x5 ......................................................................uAaccggguggaaacuagca.................... 1 +seq_377946_x1 ......................................................................ucaccggguggaaacGagca.................... 1 +seq_375901_x9 ......................................................................ucaccggguggaaacuaUca.................... 1 +seq_377531_x2 ......................................................................ucaccgggugCaaacuagca.................... 1 +seq_378056_x1 ......................................................................ucaccggguggGaacuagca.................... 1 +seq_376791_x4 ......................................................................ucaccggguggaGacuagca.................... 1 +seq_373200_x23 ......................................................................ucaccggguggaNacuagca.................... 1 +seq_377848_x1 ......................................................................ucaccggguggaaacuNgca.................... 1 +seq_377417_x2 ......................................................................ucaccggguggaaCcuagca.................... 1 +seq_377003_x4 ......................................................................ucaccgAguggaaacuagca.................... 1 +seq_376401_x6 ......................................................................ucaccggCuggaaacuagca.................... 1 +seq_377127_x3 ......................................................................ucaccggAuggaaacuagca.................... 1 +seq_378107_x1 ......................................................................uUaccggguggaaacuagca.................... 1 +seq_376935_x4 ......................................................................Gcaccggguggaaacuagca.................... 1 +seq_375025_x13 ......................................................................ucaccggguggaaacuagcU.................... 1 +seq_377653_x2 ......................................................................ucaccggguggaaacCagca.................... 1 +seq_313497_x2021......................................................................ucaccggguggaaacuagca.................... 0 +seq_374657_x15 ......................................................................ucaccggguggaaaAuagca.................... 1 +seq_377613_x2 ......................................................................ucaccggguUgaaacuagca.................... 1 +seq_375675_x10 ......................................................................ucaccggguggaaacuagcG.................... 1 +seq_371371_x37 ......................................................................ucaccgggGggaaacuagca.................... 1 +seq_376763_x4 ......................................................................ucacUggguggaaacuagca.................... 1 +seq_375934_x8 ......................................................................ucaccggguggaaacuCgca.................... 1 +seq_377599_x2 ......................................................................ucaccggguggaaacuagUa.................... 1 +seq_377839_x1 ......................................................................Ncaccggguggaaacuagca.................... 1 +seq_378050_x1 ......................................................................uNaccggguggaaacuagca.................... 1 +seq_376799_x4 ......................................................................ucaccggguggaaacuaAca.................... 1 +seq_376638_x5 ......................................................................ucaccggguggaCacuagca.................... 1 +seq_373823_x19 ......................................................................ucaccgggAggaaacuagca.................... 1 +seq_376803_x4 ......................................................................ucaccggguggaaacuagcC.................... 1 +seq_377683_x2 ......................................................................ucaccggguggaaacuagAa.................... 1 +seq_377112_x3 ......................................................................ucaccggguggCaacuagca.................... 1 +seq_376658_x5 ......................................................................ucaccggguggaaaUuagca.................... 1 +seq_376485_x6 ......................................................................ucaccggguggUaacuagca.................... 1 +seq_376169_x7 ......................................................................ucaccggguggaaacuagNa.................... 1 +seq_370746_x41 ......................................................................ucacAggguggaaacuagca.................... 1 +seq_375910_x8 ......................................................................ucaAcggguggaaacuagca.................... 1 +seq_378190_x1 ......................................................................ucaccggguCgaaacuagca.................... 1 +seq_377193_x3 ......................................................................ucaccgggugUaaacuagca.................... 1 +seq_376407_x6 ......................................................................Acaccggguggaaacuagca.................... 1 +seq_377283_x3 ......................................................................ucaUcggguggaaacuagca.................... 1 +seq_377643_x2 ......................................................................uGaccggguggaaacuagca.................... 1 +seq_378128_x1 ......................................................................ucaccggguggaaUcuagca.................... 1 +seq_377561_x2 ......................................................................ucaccggguggaaacuaCca.................... 1 +seq_375405_x10 ......................................................................ucaccgCguggaaacuagca.................... 1 +seq_377419_x2 ......................................................................ucaccggguAgaaacuagca.................... 1 +seq_377377_x2 ......................................................................ucaccAgguggaaacuagca.................... 1 +seq_376497_x6 ......................................................................ucaccUgguggaaacuagca.................... 1 +seq_377292_x3 ......................................................................Ccaccggguggaaacuagca.................... 1 +seq_377034_x3 ......................................................................ucaccgggugAaaacuagca.................... 1 +seq_378087_x1 ......................................................................ucaccgggNggaaacuagca.................... 1 +seq_377235_x3 ......................................................................ucaccggguggaaacAagcag................... 1 +seq_373154_x23 ......................................................................ucaccUgguggaaacuagcag................... 1 +seq_361443_x144 ......................................................................ucaccgggGggaaacuagcag................... 1 +seq_375100_x12 ......................................................................uNaccggguggaaacuagcag................... 1 +seq_376046_x8 ......................................................................ucaccggguggaaacCagcag................... 1 +seq_373568_x20 ......................................................................ucaccggguggaaaUuagcag................... 1 +seq_375012_x13 ......................................................................ucaccggguUgaaacuagcag................... 1 +seq_377076_x3 ......................................................................ucaccggguggaaacuagcGg................... 1 +seq_374715_x14 ......................................................................ucaccggguggGaacuagcag................... 1 +seq_370705_x41 ......................................................................ucaccggguggaaacuaUcag................... 1 +seq_377563_x2 ......................................................................Acaccggguggaaacuagcag................... 1 +seq_362702_x132 ......................................................................ucaccggguggaaacuagcaU................... 1 +seq_373084_x24 ......................................................................ucaccggguggaaacuCgcag................... 1 +seq_277590_x9943......................................................................ucaccggguggaaacuagcag................... 0 +seq_371687_x34 ......................................................................ucaccggguggaaacuagcaA................... 1 +seq_376246_x7 ......................................................................ucaccggUuggaaacuagcag................... 1 +seq_373356_x22 ......................................................................ucaccgggugCaaacuagcag................... 1 +seq_374455_x16 ......................................................................ucaccggguggaaacuaCcag................... 1 +seq_377037_x3 ......................................................................ucUccggguggaaacuagcag................... 1 +seq_376413_x6 ......................................................................ucaccggguggaaUcuagcag................... 1 +seq_377325_x2 ......................................................................ucGccggguggaaacuagcag................... 1 +seq_376383_x6 ......................................................................ucCccggguggaaacuagcag................... 1 +seq_375242_x11 ......................................................................ucaccgUguggaaacuagcag................... 1 +seq_374471_x16 ......................................................................uGaccggguggaaacuagcag................... 1 +seq_374882_x13 ......................................................................ucaUcggguggaaacuagcag................... 1 +seq_378207_x1 ......................................................................ucaccggguggaaaNuagcag................... 1 +seq_373918_x19 ......................................................................ucaccggCuggaaacuagcag................... 1 +seq_373993_x18 ......................................................................ucaccggguggaaacuNgcag................... 1 +seq_373464_x21 ......................................................................ucaccggAuggaaacuagcag................... 1 +seq_376305_x6 ......................................................................ucaccgAguggaaacuagcag................... 1 +seq_375892_x9 ......................................................................ucaccggguggaaCcuagcag................... 1 +seq_374047_x18 ......................................................................ucaccggguggaaacuagAag................... 1 +seq_374813_x14 ......................................................................ucaccggguggaaacuagcaC................... 1 +seq_374986_x13 ......................................................................ucaccggguggaaaGuagcag................... 1 +seq_374827_x14 ......................................................................ucacUggguggaaacuagcag................... 1 +seq_374503_x16 ......................................................................uAaccggguggaaacuagcag................... 1 +seq_372763_x26 ......................................................................ucaccggguggaCacuagcag................... 1 +seq_375465_x10 ......................................................................ucaccggguggaaacuGgcag................... 1 +seq_375264_x11 ......................................................................ucaccgggugAaaacuagcag................... 1 +seq_375575_x10 ......................................................................ucaccggguggaaacuUgcag................... 1 +seq_378072_x1 ......................................................................ucaNcggguggaaacuagcag................... 1 +seq_375856_x9 ......................................................................Gcaccggguggaaacuagcag................... 1 +seq_364582_x111 ......................................................................ucaccgggCggaaacuagcag................... 1 +seq_372940_x24 ......................................................................ucaccggguggUaacuagcag................... 1 +seq_372523_x27 ......................................................................ucaccggguggaGacuagcag................... 1 +seq_375172_x12 ......................................................................ucaccggguggaaacuagcCg................... 1 +seq_375341_x11 ......................................................................ucaccggguAgaaacuagcag................... 1 +seq_378331_x1 ......................................................................Ncaccggguggaaacuagcag................... 1 +seq_375820_x9 ......................................................................ucaccgggugUaaacuagcag................... 1 +seq_377543_x2 ......................................................................ucaccggNuggaaacuagcag................... 1 +seq_375784_x9 ......................................................................ucaccggguggaUacuagcag................... 1 +seq_374275_x17 ......................................................................ucaGcggguggaaacuagcag................... 1 +seq_374582_x15 ......................................................................ucaccggguggaaacuagNag................... 1 +seq_377647_x2 ......................................................................ucaccggguCgaaacuagcag................... 1 +seq_371106_x39 ......................................................................ucaAcggguggaaacuagcag................... 1 +seq_357095_x189 ......................................................................ucacAggguggaaacuagcag................... 1 +seq_376225_x7 ......................................................................uUaccggguggaaacuagcag................... 1 +seq_374224_x17 ......................................................................ucaccggguggaaacuagcUg................... 1 +seq_377577_x2 ......................................................................ucaccggguggaaGcuagcag................... 1 +seq_364121_x117 ......................................................................ucaccgggAggaaacuagcag................... 1 +seq_374743_x14 ......................................................................ucaccggguggCaacuagcag................... 1 +seq_377298_x3 ......................................................................ucaccggguggaaacGagcag................... 1 +seq_370537_x43 ......................................................................ucaccgCguggaaacuagcag................... 1 +seq_376827_x4 ......................................................................ucacGggguggaaacuagcag................... 1 +seq_377575_x2 ......................................................................ucaccggguggaaacuagGag................... 1 +seq_366243_x94 ......................................................................ucaccggguggaaaAuagcag................... 1 +seq_376267_x7 ......................................................................ucaccCgguggaaacuagcag................... 1 +seq_374173_x17 ......................................................................ucaccggguggaaacuaAcag................... 1 +seq_376491_x6 ......................................................................ucaccAgguggaaacuagcag................... 1 +seq_366616_x91 ......................................................................ucaccggguggaNacuagcag................... 1 +seq_374921_x13 ......................................................................Ccaccggguggaaacuagcag................... 1 +seq_372294_x30 ......................................................................ucaccggguggaaacuagUag................... 1 +seq_353824_x217 ......................................................................ucaccggguggaaacuagcaUu.................. 1 +seq_350246_x264 ......................................................................ucaccggguggCaacuagcagu.................. 1 +seq_315518_x1866......................................................................ucaccgggCggaaacuagcagu.................. 1 +seq_359581_x164 ......................................................................ucaccggguggaaUcuagcagu.................. 1 +seq_362834_x132 ......................................................................ucaccggguggaaacuagcaAu.................. 1 +seq_343209_x360 ......................................................................ucaccgggugAaaacuagcagu.................. 1 +seq_370664_x41 ......................................................................ucaccggguggaaacAagcagu.................. 1 +seq_358905_x171 ......................................................................ucaccggguggaUacuagcagu.................. 1 +seq_365851_x101 ......................................................................ucaccggguAgaaacuagcagu.................. 1 +seq_337854_x604 ......................................................................ucaAcggguggaaacuagcagu.................. 1 +seq_356125_x198 ......................................................................ucaccggguggGaacuagcagu.................. 1 +seq_356519_x194 ......................................................................ucaccAgguggaaacuagcagu.................. 1 +seq_360382_x156 ......................................................................ucaccggguggaaacuaAcagu.................. 1 +seq_346877_x304 ......................................................................ucaccggguggaaacuagcUgu.................. 1 +seq_350773_x263 ......................................................................ucaccggguggaaacuagAagu.................. 1 +seq_334503_x690 ......................................................................ucaccggguggaaacuagcagC.................. 1 +seq_303609_x2808......................................................................ucaccgggGggaaacuagcagu.................. 1 +seq_338458_x598 ......................................................................ucaccggguggaaacuaUcagu.................. 1 +seq_378211_x1 ......................................................................ucaccggguggNaacuagcagu.................. 1 +seq_364693_x111 ......................................................................ucaccggguggaaacGagcagu.................. 1 +seq_371067_x39 ......................................................................ucaccggNuggaaacuagcagu.................. 1 +seq_358554_x177 ......................................................................ucaccgAguggaaacuagcagu.................. 1 +seq_324605_x1295......................................................................ucaccggguggaNacuagcagu.................. 1 +seq_363360_x131 ......................................................................ucaccggguggaaaGuagcagu.................. 1 +seq_350510_x263 ......................................................................ucaccggguggaaacuaCcagu.................. 1 +seq_353161_x223 ......................................................................ucaccggguggaaacuNgcagu.................. 1 +seq_369000_x64 ......................................................................ucaccggguggaaacuagcGgu.................. 1 +seq_376811_x4 ......................................................................ucaccNgguggaaacuagcagu.................. 1 +seq_354681_x211 ......................................................................ucaGcggguggaaacuagcagu.................. 1 +seq_345626_x322 ......................................................................ucaccggguggaaaUuagcagu.................. 1 +seq_371184_x38 ......................................................................ucacGggguggaaacuagcagu.................. 1 +seq_348338_x283 ......................................................................ucaccggguggaaacuagUagu.................. 1 +seq_346264_x309 ......................................................................ucaccggguggaaacuagcCgu.................. 1 +seq_343924_x352 ......................................................................ucaccgggugCaaacuagcagu.................. 1 +seq_306417_x2793......................................................................ucacAggguggaaacuagcagu.................. 1 +seq_346573_x304 ......................................................................ucaccggguggUaacuagcagu.................. 1 +seq_339056_x557 ......................................................................ucaccggguggaaacuagcagG.................. 1 +seq_374612_x15 ......................................................................ucaccgggNggaaacuagcagu.................. 1 +seq_367235_x86 ......................................................................ucaccCgguggaaacuagcagu.................. 1 +seq_333000_x757 ......................................................................ucaccgCguggaaacuagcagu.................. 1 +seq_377559_x2 ......................................................................ucNccggguggaaacuagcagu.................. 1 +seq_340662_x508 ......................................................................ucaccggguggaCacuagcagu.................. 1 +seq_317384_x1629......................................................................ucaccgggAggaaacuagcagu.................. 1 +seq_370493_x44 ......................................................................ucGccggguggaaacuagcagu.................. 1 +seq_357654_x183 ......................................................................uGaccggguggaaacuagcagu.................. 1 +seq_336553_x669 ......................................................................ucaccggguggaaacuagcagA.................. 1 +seq_362966_x132 ......................................................................ucaccgggugUaaacuagcagu.................. 1 +seq_0_x149538 ......................................................................ucaccggguggaaacuagcagu.................. 0 +seq_355722_x204 ......................................................................uUaccggguggaaacuagcagu.................. 1 +seq_374567_x15 ......................................................................ucaNcggguggaaacuagcagu.................. 1 +seq_367321_x85 ......................................................................ucaccggguggaaCcuagcagu.................. 1 +seq_359246_x169 ......................................................................ucacUggguggaaacuagcagu.................. 1 +seq_321959_x1326......................................................................ucaccggguggaaaAuagcagu.................. 1 +seq_373688_x20 ......................................................................Ncaccggguggaaacuagcagu.................. 1 +seq_352016_x236 ......................................................................ucaccggguggaaacuagNagu.................. 1 +seq_349981_x265 ......................................................................ucaccggguUgaaacuagcagu.................. 1 +seq_377079_x3 ......................................................................ucaccggguggaaaNuagcagu.................. 1 +seq_355102_x209 ......................................................................ucaccggCuggaaacuagcagu.................. 1 +seq_363620_x129 ......................................................................ucaccgUguggaaacuagcagu.................. 1 +seq_348621_x282 ......................................................................ucaccggguggaaacuCgcagu.................. 1 +seq_364914_x108 ......................................................................ucaccggUuggaaacuagcagu.................. 1 +seq_356713_x192 ......................................................................Gcaccggguggaaacuagcagu.................. 1 +seq_362015_x141 ......................................................................uNaccggguggaaacuagcagu.................. 1 +seq_377049_x3 ......................................................................ucaccggguggaaacuagcagN.................. 1 +seq_370988_x40 ......................................................................ucaccggguggaaacuagGagu.................. 1 +seq_365750_x101 ......................................................................Acaccggguggaaacuagcagu.................. 1 +seq_360538_x155 ......................................................................ucaccggguCgaaacuagcagu.................. 1 +seq_358198_x178 ......................................................................ucaccggguggaaacuagcaCu.................. 1 +seq_347766_x287 ......................................................................uAaccggguggaaacuagcagu.................. 1 +seq_367734_x78 ......................................................................ucCccggguggaaacuagcagu.................. 1 +seq_359907_x159 ......................................................................ucaccggguggaaacuGgcagu.................. 1 +seq_349444_x269 ......................................................................ucaccUgguggaaacuagcagu.................. 1 +seq_361151_x146 ......................................................................Ccaccggguggaaacuagcagu.................. 1 +seq_344276_x345 ......................................................................ucaccggguggaGacuagcagu.................. 1 +seq_376183_x7 ......................................................................ucaccggguggaaacuaNcagu.................. 1 +seq_353605_x219 ......................................................................ucaccggAuggaaacuagcagu.................. 1 +seq_359415_x166 ......................................................................ucaccggguggaaacCagcagu.................. 1 +seq_371755_x33 ......................................................................ucUccggguggaaacuagcagu.................. 1 +seq_355518_x204 ......................................................................ucaUcggguggaaacuagcagu.................. 1 +seq_375811_x9 ......................................................................ucacNggguggaaacuagcagu.................. 1 +seq_342436_x389 ......................................................................ucaccggguggaaacuUgcagu.................. 1 +seq_370948_x40 ......................................................................ucaccggguggaaGcuagcagu.................. 1 +seq_369608_x57 ......................................................................ucaccggguggaaacuagcagug................. 0 +seq_309210_x2159......................................................................ucaccggguggaaacuagcaguA................. 1 +seq_378140_x1 ......................................................................ucaccggguCgaaacuagcagug................. 1 +seq_378025_x1 ......................................................................ucaccggguUgaaacuagcagug................. 1 +seq_287533_x5429......................................................................ucaccggguggaaacuagcaguU................. 1 +seq_377923_x1 ......................................................................ucaccggguggaaaAuagcagug................. 1 +seq_377507_x2 ......................................................................ucaccggguggaUacuagcagug................. 1 +seq_369929_x51 ......................................................................ucaccggguggaaacuagcaguC................. 1 +seq_377181_x3 ......................................................................ucaccgggGggaaacuagcagug................. 1 +seq_378212_x1 ......................................................................ucaccggguggaaacuagcaAug................. 1 +seq_378218_x1 ......................................................................ucaccggguggaaacuagcagCg................. 1 +seq_378222_x1 ......................................................................ucaccgggCggaaacuagcagug................. 1 +seq_377304_x3 ......................................................................ucacAggguggaaacuagcagug................. 1 +seq_378319_x1 ......................................................................ucaccggguggaaacuagNagug................. 1 +seq_378109_x1 ......................................................................Gcaccggguggaaacuagcagug................. 1 +seq_377806_x1 ......................................................................ucaccggguggaCacuagcagug................. 1 +seq_378252_x1 ......................................................................ucaccgggugCaaacuagcagug................. 1 +seq_378135_x1 ......................................................................ucaccggguggaaacuagcagAgg................ 1 +seq_377427_x2 ......................................................................ucaccggguggaaacuagcagugU................ 1 +seq_376723_x4 ......................................................................ucaccggguggaaacuagcaguAg................ 1 +seq_378093_x1 ......................................................................ucaccggguggaaacuagcagugg................ 0 +seq_378199_x1 ......................................................................Ccaccggguggaaacuagcagugg................ 1 +seq_377019_x3 ......................................................................ucaccggguggaaacuagcaguUg................ 1 +seq_376939_x4 ......................................................................ucaccggguggaaacuagcagugC................ 1 +seq_377675_x2 ......................................................................ucaccggguggaaacuagcagugCc............... 1 +seq_378133_x1 ......................................................................ucaccggguggaaacuagcaguCgc............... 1 +seq_377421_x2 ......................................................................ucaccggguggaaacuagcagugAc............... 1 +seq_377913_x1 ......................................................................ucaccggguggaaacuagcaguggA............... 1 +seq_378078_x1 ......................................................................ucaccggguggaaacuagcaguggU............... 1 +seq_377619_x2 ......................................................................ucaccggguggaaacuagcaguAgc............... 1 +seq_377807_x1 ......................................................................ucaccggguggaaacuagcagAggc............... 1 +seq_377898_x1 ......................................................................ucaccggguggaaacuagcagugAcu.............. 1 +seq_378113_x1 ......................................................................ucaccggguggaaacuagcaguggAu.............. 1 +seq_377401_x2 ......................................................................ucaccggguggaaacuagcaguggcG.............. 1 +seq_378194_x1 ......................................................................ucaccggguggaaacuagcaguggcu.............. 0 +seq_378167_x1 ......................................................................ucaccggguggaaacuagcaguCgcuc............. 1 +seq_378175_x1 ......................................................................ucaccggguggaaacuagcaguggUuc............. 1 +seq_377994_x1 .......................................................................caccggguggaaacuagca.................... 0 +seq_378189_x1 .......................................................................caccggguggGaacuagcag................... 1 +seq_374960_x13 .......................................................................caccggguggaaacuagcag................... 0 +seq_377130_x3 .......................................................................caccgggAggaaacuagcagu.................. 1 +seq_377925_x1 .......................................................................caccggguggaaacuagAagu.................. 1 +seq_378300_x1 .......................................................................cCccggguggaaacuagcagu.................. 1 +seq_377505_x2 .......................................................................Uaccggguggaaacuagcagu.................. 1 +seq_365546_x102 .......................................................................caccggguggaaacuagcagu.................. 0 +seq_377187_x3 .......................................................................caccggguggaaaAuagcagu.................. 1 +seq_374407_x16 .......................................................................caccgggGggaaacuagcagu.................. 1 +seq_377475_x2 .......................................................................caAcggguggaaacuagcagu.................. 1 +seq_377908_x1 .......................................................................caccggguggaaacuagcaUu.................. 1 +seq_378180_x1 .......................................................................caccggguggaaacuagcGgu.................. 1 +seq_377250_x3 .......................................................................caccgggCggaaacuagcagu.................. 1 +seq_375435_x10 .......................................................................caccggguggaaacuagcaguA................. 1 +seq_371551_x34 .......................................................................caccggguggaaacuagcaguU................. 1 +seq_378114_x1 ........................................................................accggguggaaGcuagca.................... 1 +seq_377537_x2 ........................................................................accCgguggaaacuagca.................... 1 +seq_375253_x11 ........................................................................accggguggaaacuagca.................... 0 +seq_378294_x1 ........................................................................accggguggGaacuagca.................... 1 +seq_377758_x1 ........................................................................accggguggaaacuagcCg................... 1 +seq_377711_x2 ........................................................................accgggAggaaacuagcag................... 1 +seq_368606_x67 ........................................................................accggguggaaacuagcag................... 0 +seq_377491_x2 ........................................................................accgggCggaaacuagcag................... 1 +seq_378325_x1 ........................................................................accggguggGaacuagcag................... 1 +seq_377944_x1 ........................................................................aAcggguggaaacuagcag................... 1 +seq_378146_x1 ........................................................................accggguggaGacuagcag................... 1 +seq_378272_x1 ........................................................................accgAguggaaacuagcag................... 1 +seq_378213_x1 ........................................................................accggguggaaacuaAcag................... 1 +seq_376449_x6 ........................................................................accgggGggaaacuagcag................... 1 +seq_377814_x1 ........................................................................accggguggaaacuaUcag................... 1 +seq_377816_x1 ........................................................................accggguggaaacuagcaC................... 1 +seq_377487_x2 ........................................................................accggguggaCacuagcagu.................. 1 +seq_377976_x1 ........................................................................accgggugCaaacuagcagu.................. 1 +seq_376895_x4 ........................................................................accggguggCaacuagcagu.................. 1 +seq_376608_x5 ........................................................................accggguggaaacuagAagu.................. 1 +seq_377589_x2 ........................................................................accggguggaaacCagcagu.................. 1 +seq_378160_x1 ........................................................................accggguggaaacuGgcagu.................. 1 +seq_376197_x7 ........................................................................accggguggaaaUuagcagu.................. 1 +seq_377007_x3 ........................................................................accgAguggaaacuagcagu.................. 1 +seq_378247_x1 ........................................................................accggguggaaacuagcaAu.................. 1 +seq_377343_x2 ........................................................................accggguAgaaacuagcagu.................. 1 +seq_369980_x50 ........................................................................accCgguggaaacuagcagu.................. 1 +seq_377859_x1 ........................................................................accAgguggaaacuagcagu.................. 1 +seq_377999_x1 ........................................................................accggguggaaGcuagcagu.................. 1 +seq_377373_x2 ........................................................................accgggugAaaacuagcagu.................. 1 +seq_377142_x3 ........................................................................acUggguggaaacuagcagu.................. 1 +seq_377064_x3 ........................................................................accggguggaaacuagNagu.................. 1 +seq_368470_x69 ........................................................................accgggGggaaacuagcagu.................. 1 +seq_378073_x1 ........................................................................accggguggaaacuUgcagu.................. 1 +seq_376623_x5 ........................................................................accggguggaaaNuagcagu.................. 1 +seq_374672_x15 ........................................................................accgggAggaaacuagcagu.................. 1 +seq_377457_x2 ........................................................................accgggugUaaacuagcagu.................. 1 +seq_378191_x1 ........................................................................aGcggguggaaacuagcagu.................. 1 +seq_329405_x990 ........................................................................accggguggaaacuagcagu.................. 0 +seq_375926_x8 ........................................................................accggguggGaacuagcagu.................. 1 +seq_374908_x13 ........................................................................accggguggaaacuagcagC.................. 1 +seq_377307_x3 ........................................................................accggguggaaaGuagcagu.................. 1 +seq_376987_x4 ........................................................................acAggguggaaacuagcagu.................. 1 +seq_377767_x1 ........................................................................accggguggaUacuagcagu.................. 1 +seq_378314_x1 ........................................................................accggguggaaacAagcagu.................. 1 +seq_377983_x1 ........................................................................accggNuggaaacuagcagu.................. 1 +seq_376871_x4 ........................................................................accggguggaaacuagcUgu.................. 1 +seq_377583_x2 ........................................................................aUcggguggaaacuagcagu.................. 1 +seq_376867_x4 ........................................................................accggguCgaaacuagcagu.................. 1 +seq_376479_x6 ........................................................................aAcggguggaaacuagcagu.................. 1 +seq_378163_x1 ........................................................................accUgguggaaacuagcagu.................. 1 +seq_377010_x3 ........................................................................accggguggaaacuaCcagu.................. 1 +seq_377268_x3 ........................................................................accgCguggaaacuagcagu.................. 1 +seq_375730_x9 ........................................................................accggguggaaacuagcagA.................. 1 +seq_375802_x9 ........................................................................accggguggaaacuaAcagu.................. 1 +seq_377988_x1 ........................................................................accggguggaaacuagcaNu.................. 1 +seq_376787_x4 ........................................................................accggguggUaacuagcagu.................. 1 +seq_377415_x2 ........................................................................accggguggaaacuCgcagu.................. 1 +seq_370268_x46 ........................................................................accgggCggaaacuagcagu.................. 1 +seq_377889_x1 ........................................................................acGggguggaaacuagcagu.................. 1 +seq_374934_x13 ........................................................................accggguggaaaAuagcagu.................. 1 +seq_377519_x2 ........................................................................aNcggguggaaacuagcagu.................. 1 +seq_377881_x1 ........................................................................accggguggaaacGagcagu.................. 1 +seq_377381_x2 ........................................................................accggguggaaacuagcaUu.................. 1 +seq_377097_x3 ........................................................................Uccggguggaaacuagcagu.................. 1 +seq_377797_x1 ........................................................................accggguggaaacuagGagu.................. 1 +seq_376887_x4 ........................................................................accggUuggaaacuagcagu.................. 1 +seq_378150_x1 ........................................................................accggguggaaCcuagcagu.................. 1 +seq_378251_x1 ........................................................................accggguggaaacuagUagu.................. 1 +seq_376708_x5 ........................................................................accggguggaaacuagcaCu.................. 1 +seq_377811_x1 ........................................................................Cccggguggaaacuagcagu.................. 1 +seq_376731_x4 ........................................................................accggguggaaacuaUcagu.................. 1 +seq_375829_x9 ........................................................................accggguggaaacuagcagG.................. 1 +seq_374535_x16 ........................................................................accggguggaaacuagcCgu.................. 1 +seq_377685_x2 ........................................................................accggguggaGacuagcagu.................. 1 +seq_372017_x32 ........................................................................accggguggaaacuagcaguU................. 1 +seq_377768_x1 ........................................................................accggguggaaacuagcagug................. 0 +seq_373036_x24 ........................................................................accggguggaaacuagcaguA................. 1 +seq_376927_x4 .........................................................................Ucggguggaaacuagcagu.................. 1 +seq_376014_x8 .........................................................................ccggguggaaacuagcagu.................. 0 +seq_378116_x1 .........................................................................Acggguggaaacuagcagu.................. 1 +seq_378329_x1 .........................................................................ccggguggaaacuagcaguggcu.............. 0 +seq_376903_x4 ..........................................................................cggguggaaacuagcagu.................. 0 +seq_378178_x1 ..........................................................................cggguggaaacuagAagu.................. 1 +seq_377996_x1 ............................................................................................ggcuAgaucuuuuccacu 1 + + + +>chrII:11534525-11540624_12 +score total -0.2 +score for star read(s) -1.3 +score for read counts 0 +score for mfe 0.2 +score for randfold -2.2 +score for cons. seed 3 +miRNA with same seed cbr-miR-35 +total read count 119546 +mature read count 119545 +loop read count 1 +star read count 0 +exp ffffffffffffffffffffMMMMMMMMMMMMMMMMMMMMMMlllllllllllllllllllllllllllllllSSSSSSSSSSSSSSSSSSSSSSSSSffffffffffff +pri_seq gcuacauucucuaaucuguaucaccgggugaacacuugcagugguccucgugguuucucugugagccagguccuguuccgguuuuuuccguggugauaacgcauccaaaa +pri_struct ..................((((((((((.((((....((((.(..(((((..(.....)..))))...)..)))))....))))...)).))))))))............ #MM +seq_378182_x1 ................Gguaucaccgggugaacacuugcagu.................................................................... 1 +seq_378210_x1 ..................uaucaccgggugaacacuugca...................................................................... 0 +seq_377082_x3 ..................Aaucaccgggugaacacuugcag..................................................................... 1 +seq_376915_x4 ..................uaucaccgggugaacacuugcag..................................................................... 0 +seq_378060_x1 ..................uaucaccgggugaacacuugcagu.................................................................... 0 +seq_367062_x87 ..................Aaucaccgggugaacacuugcagu.................................................................... 1 +seq_377289_x3 ...................aucaccgggugaacacuugca...................................................................... 0 +seq_377605_x2 ...................Cucaccgggugaacacuugca...................................................................... 1 +seq_378046_x1 ...................aucaccgggugaacacGugca...................................................................... 1 +seq_378288_x1 ...................aucaccgggGgaacacuugcag..................................................................... 1 +seq_377997_x1 ...................aucaccgggugaaUacuugcag..................................................................... 1 +seq_373177_x23 ...................Uucaccgggugaacacuugcag..................................................................... 1 +seq_377844_x1 ...................aucaccgggugaacacuugcaU..................................................................... 1 +seq_373668_x20 ...................aucaccgggugaacacuugcag..................................................................... 0 +seq_377762_x1 ...................aucaAcgggugaacacuugcag..................................................................... 1 +seq_377747_x1 ...................aucaccgggugaacaAuugcag..................................................................... 1 +seq_376775_x4 ...................aucaccgggCgaacacuugcagu.................................................................... 1 +seq_377639_x2 ...................aucaccCggugaacacuugcagu.................................................................... 1 +seq_377521_x2 ...................aucaccgggugaacacuugAagu.................................................................... 1 +seq_377783_x1 ...................aucaccggCugaacacuugcagu.................................................................... 1 +seq_368805_x66 ...................Cucaccgggugaacacuugcagu.................................................................... 1 +seq_377353_x2 ...................aucaccgggugaacacuugcagC.................................................................... 1 +seq_378177_x1 ...................aucaccgggugaacacuGgcagu.................................................................... 1 +seq_378165_x1 ...................aucaccgggugaNcacuugcagu.................................................................... 1 +seq_377109_x3 ...................aucaccgggugaacacuugcaUu.................................................................... 1 +seq_377917_x1 ...................Uucaccgggugaacacuugcagu.................................................................... 1 +seq_376831_x4 ...................aucaccgggAgaacacuugcagu.................................................................... 1 +seq_377800_x1 ...................aucaccggUugaacacuugcagu.................................................................... 1 +seq_376839_x4 ...................aucaccgggGgaacacuugcagu.................................................................... 1 +seq_377963_x1 ...................auGaccgggugaacacuugcagu.................................................................... 1 +seq_378067_x1 ...................aucaccggAugaacacuugcagu.................................................................... 1 +seq_358376_x178 ...................aucaccgggugaacacuugcagu.................................................................... 0 +seq_377709_x2 ...................aucaccgggugaacacuugcCgu.................................................................... 1 +seq_377782_x1 ...................aucaccgggugaacacuugcUgu.................................................................... 1 +seq_377958_x1 ...................aucaccgCgugaacacuugcagu.................................................................... 1 +seq_378230_x1 ...................aucaccgggugaacacuugcGgu.................................................................... 1 +seq_377855_x1 ...................aucaccgggugaacacuugcagA.................................................................... 1 +seq_378037_x1 ...................aucaccgAgugaacacuugcagu.................................................................... 1 +seq_378265_x1 ...................aucaccgggugaacCcuugcagu.................................................................... 1 +seq_377954_x1 ...................aucaccgggugaacacuCgcagu.................................................................... 1 +seq_377772_x1 ...................aucaAcgggugaacacuugcagu.................................................................... 1 +seq_377527_x2 ...................aucaccgggugaacacuugcaguA................................................................... 1 +seq_377133_x3 ...................aucaccgggugaacacuugcaguU................................................................... 1 +seq_378317_x1 ....................uAaccgggugaacacuug........................................................................ 1 +seq_378095_x1 ....................Acaccgggugaacacuug........................................................................ 1 +seq_373608_x20 ....................ucaccgggugaacacuug........................................................................ 0 +seq_377971_x1 ....................ucaAcgggugaacacuug........................................................................ 1 +seq_378106_x1 ....................ucaccgggugaaAacuug........................................................................ 1 +seq_377951_x1 ....................ucaccgggGgaacacuug........................................................................ 1 +seq_378005_x1 ....................ucaccgggugaCcacuug........................................................................ 1 +seq_377918_x1 ....................ucaccgggugaacacuuU........................................................................ 1 +seq_378295_x1 ....................ucaccgUgugaacacuug........................................................................ 1 +seq_377445_x2 ....................ucaccgggugaaGacuug........................................................................ 1 +seq_377897_x1 ....................ucaccgggugaaGacuugc....................................................................... 1 +seq_378284_x1 ....................ucaccgggugaacaGuugc....................................................................... 1 +seq_373012_x24 ....................ucaccgggugaacacuugc....................................................................... 0 +seq_377615_x2 ....................uAaccgggugaacacuugca...................................................................... 1 +seq_377553_x2 ....................uUaccgggugaacacuugca...................................................................... 1 +seq_378074_x1 ....................ucaccgggugaaNacuugca...................................................................... 1 +seq_376735_x4 ....................ucaccgggugaacacuuUca...................................................................... 1 +seq_375220_x11 ....................ucaccgggCgaacacuugca...................................................................... 1 +seq_378034_x1 ....................ucaccgggugCacacuugca...................................................................... 1 +seq_376568_x5 ....................ucaccggCugaacacuugca...................................................................... 1 +seq_376461_x6 ....................ucaccgAgugaacacuugca...................................................................... 1 +seq_377473_x2 ....................ucaccgggugaacacGugca...................................................................... 1 +seq_377757_x1 ....................ucaccggguCaacacuugca...................................................................... 1 +seq_372988_x24 ....................ucacAgggugaacacuugca...................................................................... 1 +seq_378205_x1 ....................ucaccgggugaacacuugUa...................................................................... 1 +seq_376943_x4 ....................ucaccgggugaacaAuugca...................................................................... 1 +seq_377253_x3 ....................ucaccgggugaacUcuugca...................................................................... 1 +seq_377555_x2 ....................ucaUcgggugaacacuugca...................................................................... 1 +seq_377891_x1 ....................ucaccAggugaacacuugca...................................................................... 1 +seq_378327_x1 ....................ucaccgggugaacacuugAa...................................................................... 1 +seq_327151_x1237....................ucaccgggugaacacuugca...................................................................... 0 +seq_378238_x1 ....................ucaccgggugaacacuCgca...................................................................... 1 +seq_377912_x1 ....................uNaccgggugaacacuugca...................................................................... 1 +seq_376443_x6 ....................ucaccgggugaaUacuugca...................................................................... 1 +seq_375385_x10 ....................ucaccgggugaacacuGgca...................................................................... 1 +seq_377802_x1 ....................ucaccgggugaacacCugca...................................................................... 1 +seq_376663_x5 ....................ucaccgggugaacacuugcU...................................................................... 1 +seq_376783_x4 ....................ucaccgggugaacacuuAca...................................................................... 1 +seq_376795_x4 ....................ucGccgggugaacacuugca...................................................................... 1 +seq_377190_x3 ....................ucaccgggugaacacuAgca...................................................................... 1 +seq_377335_x2 ....................ucaAcgggugaacacuugca...................................................................... 1 +seq_377541_x2 ....................ucaccggAugaacacuugca...................................................................... 1 +seq_377154_x3 ....................ucaccggguUaacacuugca...................................................................... 1 +seq_378270_x1 ....................Acaccgggugaacacuugca...................................................................... 1 +seq_376653_x5 ....................ucaccUggugaacacuugca...................................................................... 1 +seq_376543_x5 ....................uGaccgggugaacacuugca...................................................................... 1 +seq_376751_x4 ....................ucaccggUugaacacuugca...................................................................... 1 +seq_378299_x1 ....................ucaccgggugaacGcuugca...................................................................... 1 +seq_376078_x8 ....................ucaccgggGgaacacuugca...................................................................... 1 +seq_377830_x1 ....................ucaccgggugaCcacuugca...................................................................... 1 +seq_377397_x2 ....................ucaccgUgugaacacuugca...................................................................... 1 +seq_377557_x2 ....................ucacUgggugaacacuugca...................................................................... 1 +seq_377850_x1 ....................ucaccggNugaacacuugca...................................................................... 1 +seq_377405_x2 ....................ucaccgggugaaGacuugca...................................................................... 1 +seq_378080_x1 ....................ucaccgggugGacacuugca...................................................................... 1 +seq_375883_x9 ....................ucaccgCgugaacacuugca...................................................................... 1 +seq_377821_x1 ....................ucaccgggugaacCcuugca...................................................................... 1 +seq_374729_x14 ....................ucaccgggugaaAacuugca...................................................................... 1 +seq_377667_x2 ....................ucaGcgggugaacacuugca...................................................................... 1 +seq_377565_x2 ....................ucaccgggugaacacuugcG...................................................................... 1 +seq_377829_x1 ....................ucaccgggugaUcacuugca...................................................................... 1 +seq_373975_x18 ....................ucaccgggAgaacacuugca...................................................................... 1 +seq_377148_x3 ....................ucaccgggugaacacuuCca...................................................................... 1 +seq_378321_x1 ....................ucaccCggugaacacuugca...................................................................... 1 +seq_377824_x1 ....................Gcaccgggugaacacuugca...................................................................... 1 +seq_377046_x3 ....................ucaccgggugaacaGuugca...................................................................... 1 +seq_377838_x1 ....................ucaccgggugaacacuuNca...................................................................... 1 +seq_377355_x2 ....................ucaccgggugaacacuugGag..................................................................... 1 +seq_376603_x5 ....................Acaccgggugaacacuugcag..................................................................... 1 +seq_375415_x10 ....................ucaccgggugaacacuugAag..................................................................... 1 +seq_376573_x5 ....................ucaccgggugaaGacuugcag..................................................................... 1 +seq_376425_x6 ....................ucaccgggugaacacuAgcag..................................................................... 1 +seq_376176_x7 ....................ucaccgggugaacacuugNag..................................................................... 1 +seq_378132_x1 ....................ucacGgggugaacacuugcag..................................................................... 1 +seq_376588_x5 ....................ucaUcgggugaacacuugcag..................................................................... 1 +seq_376274_x7 ....................ucaccggguAaacacuugcag..................................................................... 1 +seq_376070_x8 ....................ucaccgggugaacacuugcaC..................................................................... 1 +seq_375308_x11 ....................ucaccgggugaacacCugcag..................................................................... 1 +seq_376126_x8 ....................ucaccUggugaacacuugcag..................................................................... 1 +seq_378103_x1 ....................ucNccgggugaacacuugcag..................................................................... 1 +seq_376593_x5 ....................uGaccgggugaacacuugcag..................................................................... 1 +seq_373937_x19 ....................ucaccgggugaacacuuUcag..................................................................... 1 +seq_376204_x7 ....................ucaccgggugaacacuuCcag..................................................................... 1 +seq_377435_x2 ....................ucaccggguCaacacuugcag..................................................................... 1 +seq_377779_x1 ....................ucaccgggugaacaGuugcag..................................................................... 1 +seq_377788_x1 ....................ucaccgggugaacacuNgcag..................................................................... 1 +seq_377295_x3 ....................ucaccgggugaacacuCgcag..................................................................... 1 +seq_376521_x6 ....................uAaccgggugaacacuugcag..................................................................... 1 +seq_375766_x9 ....................ucaccgggugaaUacuugcag..................................................................... 1 +seq_377265_x3 ....................uUaccgggugaacacuugcag..................................................................... 1 +seq_376835_x4 ....................ucaccggAugaacacuugcag..................................................................... 1 +seq_377729_x2 ....................ucaccgggugaUcacuugcag..................................................................... 1 +seq_296962_x3796....................ucaccgggugaacacuugcag..................................................................... 0 +seq_369371_x60 ....................ucaccgggGgaacacuugcag..................................................................... 1 +seq_376643_x5 ....................ucaccgggugCacacuugcag..................................................................... 1 +seq_376563_x5 ....................ucaccgUgugaacacuugcag..................................................................... 1 +seq_377437_x2 ....................ucaGcgggugaacacuugcag..................................................................... 1 +seq_376253_x7 ....................ucaccggguUaacacuugcag..................................................................... 1 +seq_375793_x9 ....................ucaccgggugaacacuugcCg..................................................................... 1 +seq_367812_x78 ....................ucacAgggugaacacuugcag..................................................................... 1 +seq_376923_x4 ....................ucaccgggugaacacAugcag..................................................................... 1 +seq_376347_x6 ....................ucaccgAgugaacacuugcag..................................................................... 1 +seq_376190_x7 ....................ucacUgggugaacacuugcag..................................................................... 1 +seq_370787_x41 ....................ucaccgggCgaacacuugcag..................................................................... 1 +seq_377025_x3 ....................ucUccgggugaacacuugcag..................................................................... 1 +seq_376983_x4 ....................ucCccgggugaacacuugcag..................................................................... 1 +seq_378141_x1 ....................ucaccggNugaacacuugcag..................................................................... 1 +seq_377067_x3 ....................ucaccgggugaCcacuugcag..................................................................... 1 +seq_376155_x7 ....................Ccaccgggugaacacuugcag..................................................................... 1 +seq_374771_x14 ....................ucaccgggugaacacuGgcag..................................................................... 1 +seq_377786_x1 ....................ucaccgggugaacacuugcGg..................................................................... 1 +seq_377515_x2 ....................ucaccgggugaacCcuugcag..................................................................... 1 +seq_375184_x12 ....................ucaccgggugaacacuugcUg..................................................................... 1 +seq_375958_x8 ....................ucaccgggugaacacuugUag..................................................................... 1 +seq_372173_x31 ....................ucaccgggugaaNacuugcag..................................................................... 1 +seq_372890_x25 ....................ucaccgggugaacaAuugcag..................................................................... 1 +seq_372737_x26 ....................ucaccgCgugaacacuugcag..................................................................... 1 +seq_371788_x33 ....................ucaccgggAgaacacuugcag..................................................................... 1 +seq_376931_x4 ....................ucaccgggugGacacuugcag..................................................................... 1 +seq_376389_x6 ....................ucaccAggugaacacuugcag..................................................................... 1 +seq_374375_x16 ....................ucaccgggugaacacuugcaU..................................................................... 1 +seq_377333_x2 ....................uNaccgggugaacacuugcag..................................................................... 1 +seq_377723_x2 ....................ucGccgggugaacacuugcag..................................................................... 1 +seq_376807_x4 ....................ucaccgggugUacacuugcag..................................................................... 1 +seq_377547_x2 ....................ucaccgggugaacacuugcaA..................................................................... 1 +seq_375535_x10 ....................ucaccgggugaacUcuugcag..................................................................... 1 +seq_376911_x4 ....................ucaccggUugaacacuugcag..................................................................... 1 +seq_373246_x22 ....................ucaccgggugaaAacuugcag..................................................................... 1 +seq_376668_x5 ....................ucaccgggugaacaUuugcag..................................................................... 1 +seq_378036_x1 ....................ucaccCggugaacacuugcag..................................................................... 1 +seq_377651_x2 ....................ucaccgggugaGcacuugcag..................................................................... 1 +seq_378309_x1 ....................ucaccgggugaacacuuAcag..................................................................... 1 +seq_375990_x8 ....................ucaccggCugaacacuugcag..................................................................... 1 +seq_375625_x10 ....................ucaAcgggugaacacuugcag..................................................................... 1 +seq_376162_x7 ....................Gcaccgggugaacacuugcag..................................................................... 1 +seq_376583_x5 ....................ucaccgggugaacacGugcag..................................................................... 1 +seq_361001_x150 ....................ucaccgggugaacacuuCcagu.................................................................... 1 +seq_369064_x62 ....................ucaccgggugaacacuugcaAu.................................................................... 1 +seq_366051_x97 ....................ucaccgggugaacaUuugcagu.................................................................... 1 +seq_359745_x162 ....................ucaccgggugGacacuugcagu.................................................................... 1 +seq_335879_x674 ....................ucaccgCgugaacacuugcagu.................................................................... 1 +seq_352711_x226 ....................ucaccgggugaaGacuugcagu.................................................................... 1 +seq_344621_x340 ....................ucaAcgggugaacacuugcagu.................................................................... 1 +seq_332159_x841 ....................ucaccgggAgaacacuugcagu.................................................................... 1 +seq_351534_x242 ....................ucaccgggugaacacuugcagG.................................................................... 1 +seq_341618_x427 ....................ucaccgggugaacaAuugcagu.................................................................... 1 +seq_367149_x86 ....................ucaGcgggugaacacuugcagu.................................................................... 1 +seq_371222_x38 ....................ucaccggNugaacacuugcagu.................................................................... 1 +seq_335193_x686 ....................ucaccgggugaaAacuugcagu.................................................................... 1 +seq_363877_x122 ....................ucaccgggugaacacuNgcagu.................................................................... 1 +seq_149538_x90904....................ucaccgggugaacacuugcagu.................................................................... 0 +seq_360693_x155 ....................ucaccgggugaacacuugNagu.................................................................... 1 +seq_363491_x129 ....................ucaccgggugaacacuuAcagu.................................................................... 1 +seq_356323_x196 ....................ucaccgggugaaUacuugcagu.................................................................... 1 +seq_355311_x207 ....................ucaccggCugaacacuugcagu.................................................................... 1 +seq_365443_x103 ....................uGaccgggugaacacuugcagu.................................................................... 1 +seq_365022_x107 ....................uUaccgggugaacacuugcagu.................................................................... 1 +seq_375694_x9 ....................Ncaccgggugaacacuugcagu.................................................................... 1 +seq_356905_x190 ....................ucaccUggugaacacuugcagu.................................................................... 1 +seq_375974_x8 ....................ucUccgggugaacacuugcagu.................................................................... 1 +seq_363749_x128 ....................ucaUcgggugaacacuugcagu.................................................................... 1 +seq_371028_x39 ....................ucaccgggugaacaGuugcagu.................................................................... 1 +seq_375545_x10 ....................ucacNgggugaacacuugcagu.................................................................... 1 +seq_354892_x210 ....................ucaccgggugCacacuugcagu.................................................................... 1 +seq_362156_x140 ....................ucaccgggugaacacuugcaCu.................................................................... 1 +seq_364468_x114 ....................ucaccgUgugaacacuugcagu.................................................................... 1 +seq_366524_x92 ....................ucaccggguAaacacuugcagu.................................................................... 1 +seq_354469_x212 ....................ucaccggguUaacacuugcagu.................................................................... 1 +seq_331306_x853 ....................ucaccgggCgaacacuugcagu.................................................................... 1 +seq_359076_x170 ....................ucaccgggugaacacuCgcagu.................................................................... 1 +seq_365129_x106 ....................ucacUgggugaacacuugcagu.................................................................... 1 +seq_373223_x23 ....................ucacGgggugaacacuugcagu.................................................................... 1 +seq_371260_x37 ....................ucaccgggugaacacuugGagu.................................................................... 1 +seq_358731_x174 ....................ucaccgggugaacacuAgcagu.................................................................... 1 +seq_342045_x391 ....................ucaccgggugaacacuugcCgu.................................................................... 1 +seq_362296_x138 ....................ucaccgggugaacacuugcaUu.................................................................... 1 +seq_365339_x104 ....................ucaccgggugaacacuugAagu.................................................................... 1 +seq_372468_x28 ....................ucaccgggugaUcacuugcagu.................................................................... 1 +seq_372496_x27 ....................ucGccgggugaacacuugcagu.................................................................... 1 +seq_375565_x10 ....................ucaNcgggugaacacuugcagu.................................................................... 1 +seq_369188_x61 ....................ucaccgggugaCcacuugcagu.................................................................... 1 +seq_357284_x187 ....................ucaccgggugaacacuugcagA.................................................................... 1 +seq_367490_x83 ....................uNaccgggugaacacuugcagu.................................................................... 1 +seq_349174_x270 ....................ucaccgggugaacacuugcagC.................................................................... 1 +seq_368261_x70 ....................ucaccCggugaacacuugcagu.................................................................... 1 +seq_363098_x131 ....................ucaccgggugaacacGugcagu.................................................................... 1 +seq_377118_x3 ....................ucaccNggugaacacuugcagu.................................................................... 1 +seq_360848_x153 ....................ucaccgAgugaacacuugcagu.................................................................... 1 +seq_341170_x448 ....................ucaccgggugaacacuuUcagu.................................................................... 1 +seq_361297_x146 ....................ucaccAggugaacacuugcagu.................................................................... 1 +cel-miR-37 ....................ucaccgggugaacacuugcagu.................................................................... 0 +seq_366431_x93 ....................Ccaccgggugaacacuugcagu.................................................................... 1 +seq_376287_x6 ....................ucNccgggugaacacuugcagu.................................................................... 1 +seq_345299_x327 ....................ucaccgggugaacacuugcUgu.................................................................... 1 +seq_354041_x214 ....................uAaccgggugaacacuugcagu.................................................................... 1 +seq_363999_x122 ....................ucaccggguCaacacuugcagu.................................................................... 1 +seq_319013_x1597....................ucacAgggugaacacuugcagu.................................................................... 1 +seq_369126_x62 ....................ucaccgggugaacCcuugcagu.................................................................... 1 +seq_340154_x508 ....................ucaccgggugaacacuGgcagu.................................................................... 1 +seq_366337_x94 ....................ucaccggUugaacacuugcagu.................................................................... 1 +seq_372789_x26 ....................ucaccgggugaGcacuugcagu.................................................................... 1 +seq_364238_x115 ....................Gcaccgggugaacacuugcagu.................................................................... 1 +seq_377843_x1 ....................ucaccgggugaacacuuNcagu.................................................................... 1 +seq_365648_x102 ....................ucaccgggugUacacuugcagu.................................................................... 1 +seq_371480_x36 ....................ucCccgggugaacacuugcagu.................................................................... 1 +seq_362569_x133 ....................ucaccgggugaacacuugUagu.................................................................... 1 +seq_362434_x135 ....................ucaccgggugaacUcuugcagu.................................................................... 1 +seq_368190_x71 ....................Acaccgggugaacacuugcagu.................................................................... 1 +seq_330395_x911 ....................ucaccgggugaaNacuugcagu.................................................................... 1 +seq_370868_x40 ....................ucaccgggugaacGcuugcagu.................................................................... 1 +seq_323285_x1320....................ucaccgggGgaacacuugcagu.................................................................... 1 +seq_358020_x178 ....................ucaccggAugaacacuugcagu.................................................................... 1 +seq_375330_x11 ....................ucaccgggNgaacacuugcagu.................................................................... 1 +seq_369665_x55 ....................ucaccgggugaacacAugcagu.................................................................... 1 +seq_357471_x183 ....................ucaccgggugaacacCugcagu.................................................................... 1 +seq_368539_x67 ....................ucaccgggugaacacuugcGgu.................................................................... 1 +seq_377977_x1 ....................ucaccgggugaacacuugcagGg................................................................... 1 +seq_377822_x1 ....................ucaAcgggugaacacuugcagug................................................................... 1 +seq_377949_x1 ....................ucaccgggugaacacGugcagug................................................................... 1 +seq_373861_x19 ....................ucaccgggugaacacuugcagug................................................................... 0 +seq_373378_x22 ....................ucaccgggugaacacuugcaguC................................................................... 1 +seq_325900_x1251....................ucaccgggugaacacuugcaguA................................................................... 1 +seq_377687_x2 ....................ucaccgggugaacacuugcUgug................................................................... 1 +seq_300758_x2851....................ucaccgggugaacacuugcaguU................................................................... 1 +seq_378118_x1 ....................uAaccgggugaacacuugcagug................................................................... 1 +seq_377256_x3 ....................ucaccgggugaacacuugcagugA.................................................................. 1 +seq_377858_x1 ....................ucaccgggugaacacuugcaguCg.................................................................. 1 +seq_378081_x1 ....................ucaccgggugaacacuugcaguAg.................................................................. 1 +seq_376855_x4 ....................ucaccgggugaacacuugcagugC.................................................................. 1 +seq_378276_x1 ....................ucaccgggugaacacuugcaguUg.................................................................. 1 +seq_377629_x2 ....................ucaccgggugaacacuugcagugg.................................................................. 0 +seq_378008_x1 ....................uUaccgggugaacacuugcaguggu................................................................. 1 +seq_378261_x1 ....................ucaccgggugaacacuugcaguggu................................................................. 0 +seq_377773_x1 ....................ucaccgggugaacacuugcaguggA................................................................. 1 +seq_378246_x1 ....................ucaccgggugaacacuugcagugUu................................................................. 1 +seq_377896_x1 ....................ucaccgggugaacacuugcaguggCc................................................................ 1 +seq_377447_x2 ....................ucaccgggugaacacuugcagugAuc................................................................ 1 +seq_378068_x1 ....................ucaccgggugaacacuugcaguggucA............................................................... 1 +seq_377411_x2 ....................ucaccgggugaacacuugcagugguUc............................................................... 1 +seq_377899_x1 .....................caccgggugaacacuugca...................................................................... 0 +seq_377943_x1 .....................caAcgggugaacacuugcag..................................................................... 1 +seq_373131_x23 .....................caccgggugaacacuugcag..................................................................... 0 +seq_377857_x1 .....................caccgggugaacaUuugcag..................................................................... 1 +seq_377921_x1 .....................cGccgggugaacacuugcag..................................................................... 1 +seq_376755_x4 .....................Uaccgggugaacacuugcagu.................................................................... 1 +seq_378164_x1 .....................caccgggugaacaAuugcagu.................................................................... 1 +seq_376419_x6 .....................caccgggAgaacacuugcagu.................................................................... 1 +seq_377715_x2 .....................caccgggugaacacuCgcagu.................................................................... 1 +seq_378030_x1 .....................caccgggugaacacuGgcagu.................................................................... 1 +seq_378016_x1 .....................caccggguCaacacuugcagu.................................................................... 1 +seq_377022_x3 .....................caccgggugaacacuugcagA.................................................................... 1 +seq_378214_x1 .....................caccgggugaCcacuugcagu.................................................................... 1 +seq_377835_x1 .....................caccgggugaacacNugcagu.................................................................... 1 +seq_378161_x1 .....................cacGgggugaacacuugcagu.................................................................... 1 +seq_374011_x18 .....................caccgggGgaacacuugcagu.................................................................... 1 +seq_377900_x1 .....................cNccgggugaacacuugcagu.................................................................... 1 +seq_376260_x7 .....................caccgggugaaAacuugcagu.................................................................... 1 +seq_348053_x285 .....................caccgggugaacacuugcagu.................................................................... 0 +seq_377795_x1 .....................caccAggugaacacuugcagu.................................................................... 1 +seq_377649_x2 .....................caccgggugaacacuuAcagu.................................................................... 1 +seq_377928_x1 .....................caccgggugaacacGugcagu.................................................................... 1 +seq_378111_x1 .....................caccgggugaacacuAgcagu.................................................................... 1 +seq_377202_x3 .....................caccgggugaacacuugcUgu.................................................................... 1 +seq_377904_x1 .....................cGccgggugaacacuugcagu.................................................................... 1 +seq_378018_x1 .....................caccgggugaacNcuugcagu.................................................................... 1 +seq_378263_x1 .....................caccgggugaaGacuugcagu.................................................................... 1 +seq_377990_x1 .....................cCccgggugaacacuugcagu.................................................................... 1 +seq_376553_x5 .....................caccgggCgaacacuugcagu.................................................................... 1 +seq_376688_x5 .....................caccgggugaacacuugcagC.................................................................... 1 +seq_377461_x2 .....................caccgggugaacacuuCcagu.................................................................... 1 +seq_377804_x1 .....................caccggAugaacacuugcagu.................................................................... 1 +seq_376086_x8 .....................caAcgggugaacacuugcagu.................................................................... 1 +seq_353384_x221 .....................caccgggugaacacuugcaguU................................................................... 1 +seq_378003_x1 .....................caccgggugaacacuugcagCg................................................................... 1 +seq_374439_x16 .....................caccgggugaacacuugcagug................................................................... 0 +seq_361874_x141 .....................caccgggugaacacuugcaguA................................................................... 1 +seq_377286_x3 .....................caccgggugaacacuugcaguC................................................................... 1 +seq_378195_x1 .....................caccgggugaacacuugcagugU.................................................................. 1 +seq_378303_x1 .....................caccgggugaacacuugcagugC.................................................................. 1 +seq_378250_x1 .....................caccgggugaacacuugcaguUg.................................................................. 1 +seq_378188_x1 ......................accgggCgaacacuugca...................................................................... 1 +seq_378220_x1 ......................accgggugaacacAugca...................................................................... 1 +seq_376094_x8 ......................accgggugaacacuugca...................................................................... 0 +seq_370405_x44 ......................accgggugaacacuugcag..................................................................... 0 +seq_377805_x1 ......................accCggugaacacuugcag..................................................................... 1 +seq_377998_x1 ......................accggUugaacacuugcag..................................................................... 1 +seq_378298_x1 ......................accgggugaacacuugcCg..................................................................... 1 +seq_378052_x1 ......................aGcgggugaacacuugcag..................................................................... 1 +seq_377965_x1 ......................accgggCgaacacuugcag..................................................................... 1 +seq_378289_x1 ......................accgggugaacacCugcag..................................................................... 1 +seq_378102_x1 ......................accgggAgaacacuugcag..................................................................... 1 +seq_377184_x3 ......................accgggugaacacuugcagG.................................................................... 1 +seq_378152_x1 ......................accgggugaacaUuugcagu.................................................................... 1 +seq_374359_x16 ......................accgggGgaacacuugcagu.................................................................... 1 +seq_376473_x6 ......................accgCgugaacacuugcagu.................................................................... 1 +seq_377986_x1 ......................accgggugaacacuugGagu.................................................................... 1 +seq_378237_x1 ......................accgggugCacacuugcagu.................................................................... 1 +seq_377721_x2 ......................accgggugaacacuugUagu.................................................................... 1 +seq_375124_x12 ......................accCggugaacacuugcagu.................................................................... 1 +seq_373485_x21 ......................accgggugaacacuuUcagu.................................................................... 1 +seq_375721_x9 ......................accgggugaaAacuugcagu.................................................................... 1 +seq_377713_x2 ......................aAcgggugaacacuugcagu.................................................................... 1 +seq_376951_x4 ......................acAgggugaacacuugcagu.................................................................... 1 +seq_377609_x2 ......................accgggugaacacuAgcagu.................................................................... 1 +seq_377930_x1 ......................accggAugaacacuugcagu.................................................................... 1 +seq_375685_x9 ......................accgggugaacacuugcagC.................................................................... 1 +seq_377847_x1 ......................accgggugaaUacuugcagu.................................................................... 1 +seq_377661_x2 ......................accgggugaacacuGgcagu.................................................................... 1 +seq_333757_x746 ......................accgggugaacacuugcagu.................................................................... 0 +seq_378076_x1 ......................accgggugaacacCugcagu.................................................................... 1 +seq_378101_x1 ......................accgggugaaGacuugcagu.................................................................... 1 +seq_378307_x1 ......................accggCugaacacuugcagu.................................................................... 1 +seq_373108_x23 ......................accgggugaacacuugcCgu.................................................................... 1 +seq_376847_x4 ......................accggguCaacacuugcagu.................................................................... 1 +seq_377789_x1 ......................accgggugaacacuugcaUu.................................................................... 1 +seq_378184_x1 ......................accgggugaacacuugcUgu.................................................................... 1 +seq_377441_x2 ......................accAggugaacacuugcagu.................................................................... 1 +seq_377169_x3 ......................accgggugaacaAuugcagu.................................................................... 1 +seq_377671_x2 ......................accggguAaacacuugcagu.................................................................... 1 +seq_377172_x3 ......................accgAgugaacacuugcagu.................................................................... 1 +seq_375982_x8 ......................accgggugaacacuugcagA.................................................................... 1 +seq_376341_x6 ......................accgggugaacacuugAagu.................................................................... 1 +seq_375148_x12 ......................accgggAgaacacuugcagu.................................................................... 1 +seq_377973_x1 ......................Cccgggugaacacuugcagu.................................................................... 1 +seq_378156_x1 ......................accgggugaacGcuugcagu.................................................................... 1 +seq_377549_x2 ......................accgUgugaacacuugcagu.................................................................... 1 +seq_376598_x5 ......................accgggugaacacuugcaCu.................................................................... 1 +seq_377593_x2 ......................aGcgggugaacacuugcagu.................................................................... 1 +seq_377322_x3 ......................acUgggugaacacuugcagu.................................................................... 1 +seq_376823_x4 ......................accgggugaacCcuugcagu.................................................................... 1 +seq_378201_x1 ......................aUcgggugaacacuugcagu.................................................................... 1 +seq_377160_x3 ......................accggguUaacacuugcagu.................................................................... 1 +seq_378002_x1 ......................accgggugaacacuuAcagu.................................................................... 1 +seq_377226_x3 ......................accgggugaacacuuCcagu.................................................................... 1 +seq_377393_x2 ......................accgggugaacacGugcagu.................................................................... 1 +seq_376971_x4 ......................accgggugaacaNuugcagu.................................................................... 1 +seq_377601_x2 ......................accggUugaacacuugcagu.................................................................... 1 +seq_371920_x33 ......................accgggCgaacacuugcagu.................................................................... 1 +seq_377277_x3 ......................accgggugUacacuugcagu.................................................................... 1 +seq_377385_x2 ......................accUggugaacacuugcagu.................................................................... 1 +seq_377611_x2 ......................accgggugGacacuugcagu.................................................................... 1 +seq_378233_x1 ......................Uccgggugaacacuugcagu.................................................................... 1 +seq_372411_x29 ......................accgggugaacacuugcaguU................................................................... 1 +seq_374519_x16 ......................accgggugaacacuugcaguA................................................................... 1 +seq_378026_x1 ......................accgggugaacacuugcaguUg.................................................................. 1 +seq_378241_x1 .......................Ucgggugaacacuugcag..................................................................... 1 +seq_377861_x1 .......................ccgggugaacacuugcag..................................................................... 0 +seq_377301_x3 .......................ccgggugaacacuugcagu.................................................................... 0 +seq_377407_x2 .......................Ucgggugaacacuugcagu.................................................................... 1 +seq_377810_x1 ........................cgggCgaacacuugcagu.................................................................... 1 +seq_377232_x3 ........................cgggugaacacuugcagu.................................................................... 0 +seq_378012_x1 ........................................................cucugugaUccagguccugu.................................. 1 + + + +>chrII:11534525-11540624_11 +score total 61011.7 +score for star read(s) 3.9 +score for read counts 61001.2 +score for mfe 2 +score for randfold 1.6 +score for cons. seed 3 +miRNA with same seed cbr-miR-35 +total read count 119663 +mature read count 119545 +loop read count 0 +star read count 118 +exp fffffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSSllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMffffffffffffffffff +obs fffffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSSllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMffffffffffffffffff +pri_seq uuaaaaucgauucuagaaacccuuggaccaguguggguguccguugcggugcuacauucucuaaucuguaucaccgggugaacacuugcagugguccucgugguuucucu +pri_struct ..............((((((((..((((((.((..(((((....(.(((((.((((..........)))).))))).)...)))))..)).))))))..).))))))).. #MM +seq_378312_x1 .............................aguguggguguccguugcggugcua........................................................ 0 +seq_377115_x3 ..............................guguggguguccguugcggugcu......................................................... 0 +seq_378105_x1 ...............................uguggguguccguugcgg............................................................. 0 +seq_378286_x1 ...............................ugugggGguccguugcggu............................................................ 1 +seq_378185_x1 ...............................uguggguguccguugcUgug........................................................... 1 +seq_378273_x1 ...............................uguggguguccguugcggug........................................................... 0 +seq_378154_x1 ...............................uguggguguccguugcggugc.......................................................... 0 +seq_377931_x1 ...............................uguggguguccguugcggugAu......................................................... 1 +seq_374757_x14 ...............................uguggguguccguugcggugcu......................................................... 0 +seq_378090_x1 ...............................uguggguguccguugAggugcu......................................................... 1 +seq_377449_x2 ...............................ugGggguguccguugcggugcua........................................................ 1 +seq_377794_x1 ...............................uguggguguccguugUggugcua........................................................ 1 +seq_377787_x1 ...............................uguggguguccgGugcggugcua........................................................ 1 +seq_378315_x1 ...............................uguggguguccguugcggCgcua........................................................ 1 +seq_378232_x1 ...............................uguggguCuccguugcggugcua........................................................ 1 +seq_367968_x76 ...............................uguggguguccguugcggugcua........................................................ 0 +seq_378200_x1 ...............................uguggguguccguugcggugcGa........................................................ 1 +seq_377774_x1 ...............................uguggguguccguugcggugUua........................................................ 1 +seq_378038_x1 ...............................ugugggugucAguugcggugcua........................................................ 1 +seq_378322_x1 ...............................uguggguguccguugcggugAua........................................................ 1 +seq_378007_x1 ...............................ugAggguguccguugcggugcua........................................................ 1 +seq_377837_x1 ...............................uguUgguguccguugcggugcua........................................................ 1 +seq_376613_x5 ...............................uguggguguccguugcggugcuU........................................................ 1 +seq_378182_x1 ..................................................................Gguaucaccgggugaacacuugcagu.................. 1 +seq_378210_x1 ....................................................................uaucaccgggugaacacuugca.................... 0 +seq_377082_x3 ....................................................................Aaucaccgggugaacacuugcag................... 1 +seq_376915_x4 ....................................................................uaucaccgggugaacacuugcag................... 0 +seq_378060_x1 ....................................................................uaucaccgggugaacacuugcagu.................. 0 +seq_367062_x87 ....................................................................Aaucaccgggugaacacuugcagu.................. 1 +seq_377289_x3 .....................................................................aucaccgggugaacacuugca.................... 0 +seq_377605_x2 .....................................................................Cucaccgggugaacacuugca.................... 1 +seq_378046_x1 .....................................................................aucaccgggugaacacGugca.................... 1 +seq_377844_x1 .....................................................................aucaccgggugaacacuugcaU................... 1 +seq_373668_x20 .....................................................................aucaccgggugaacacuugcag................... 0 +seq_373177_x23 .....................................................................Uucaccgggugaacacuugcag................... 1 +seq_377762_x1 .....................................................................aucaAcgggugaacacuugcag................... 1 +seq_377747_x1 .....................................................................aucaccgggugaacaAuugcag................... 1 +seq_377997_x1 .....................................................................aucaccgggugaaUacuugcag................... 1 +seq_378288_x1 .....................................................................aucaccgggGgaacacuugcag................... 1 +seq_377521_x2 .....................................................................aucaccgggugaacacuugAagu.................. 1 +seq_376839_x4 .....................................................................aucaccgggGgaacacuugcagu.................. 1 +seq_368805_x66 .....................................................................Cucaccgggugaacacuugcagu.................. 1 +seq_377917_x1 .....................................................................Uucaccgggugaacacuugcagu.................. 1 +seq_378067_x1 .....................................................................aucaccggAugaacacuugcagu.................. 1 +seq_378230_x1 .....................................................................aucaccgggugaacacuugcGgu.................. 1 +seq_377709_x2 .....................................................................aucaccgggugaacacuugcCgu.................. 1 +seq_377954_x1 .....................................................................aucaccgggugaacacuCgcagu.................. 1 +seq_377772_x1 .....................................................................aucaAcgggugaacacuugcagu.................. 1 +seq_377800_x1 .....................................................................aucaccggUugaacacuugcagu.................. 1 +seq_377855_x1 .....................................................................aucaccgggugaacacuugcagA.................. 1 +seq_376775_x4 .....................................................................aucaccgggCgaacacuugcagu.................. 1 +seq_377782_x1 .....................................................................aucaccgggugaacacuugcUgu.................. 1 +seq_377963_x1 .....................................................................auGaccgggugaacacuugcagu.................. 1 +seq_377958_x1 .....................................................................aucaccgCgugaacacuugcagu.................. 1 +seq_376831_x4 .....................................................................aucaccgggAgaacacuugcagu.................. 1 +seq_378177_x1 .....................................................................aucaccgggugaacacuGgcagu.................. 1 +seq_377353_x2 .....................................................................aucaccgggugaacacuugcagC.................. 1 +seq_378037_x1 .....................................................................aucaccgAgugaacacuugcagu.................. 1 +seq_377639_x2 .....................................................................aucaccCggugaacacuugcagu.................. 1 +seq_358376_x178 .....................................................................aucaccgggugaacacuugcagu.................. 0 +seq_378265_x1 .....................................................................aucaccgggugaacCcuugcagu.................. 1 +seq_378165_x1 .....................................................................aucaccgggugaNcacuugcagu.................. 1 +seq_377783_x1 .....................................................................aucaccggCugaacacuugcagu.................. 1 +seq_377109_x3 .....................................................................aucaccgggugaacacuugcaUu.................. 1 +seq_377133_x3 .....................................................................aucaccgggugaacacuugcaguU................. 1 +seq_377527_x2 .....................................................................aucaccgggugaacacuugcaguA................. 1 +seq_377971_x1 ......................................................................ucaAcgggugaacacuug...................... 1 +seq_377445_x2 ......................................................................ucaccgggugaaGacuug...................... 1 +seq_378317_x1 ......................................................................uAaccgggugaacacuug...................... 1 +seq_378106_x1 ......................................................................ucaccgggugaaAacuug...................... 1 +seq_377951_x1 ......................................................................ucaccgggGgaacacuug...................... 1 +seq_378095_x1 ......................................................................Acaccgggugaacacuug...................... 1 +seq_377918_x1 ......................................................................ucaccgggugaacacuuU...................... 1 +seq_373608_x20 ......................................................................ucaccgggugaacacuug...................... 0 +seq_378005_x1 ......................................................................ucaccgggugaCcacuug...................... 1 +seq_378295_x1 ......................................................................ucaccgUgugaacacuug...................... 1 +seq_377897_x1 ......................................................................ucaccgggugaaGacuugc..................... 1 +seq_373012_x24 ......................................................................ucaccgggugaacacuugc..................... 0 +seq_378284_x1 ......................................................................ucaccgggugaacaGuugc..................... 1 +seq_376461_x6 ......................................................................ucaccgAgugaacacuugca.................... 1 +seq_327151_x1237......................................................................ucaccgggugaacacuugca.................... 0 +seq_377912_x1 ......................................................................uNaccgggugaacacuugca.................... 1 +seq_376568_x5 ......................................................................ucaccggCugaacacuugca.................... 1 +seq_377829_x1 ......................................................................ucaccgggugaUcacuugca.................... 1 +seq_377473_x2 ......................................................................ucaccgggugaacacGugca.................... 1 +seq_376653_x5 ......................................................................ucaccUggugaacacuugca.................... 1 +seq_377553_x2 ......................................................................uUaccgggugaacacuugca.................... 1 +seq_377253_x3 ......................................................................ucaccgggugaacUcuugca.................... 1 +seq_377557_x2 ......................................................................ucacUgggugaacacuugca.................... 1 +seq_377830_x1 ......................................................................ucaccgggugaCcacuugca.................... 1 +seq_372988_x24 ......................................................................ucacAgggugaacacuugca.................... 1 +seq_378074_x1 ......................................................................ucaccgggugaaNacuugca.................... 1 +seq_377838_x1 ......................................................................ucaccgggugaacacuuNca.................... 1 +seq_377565_x2 ......................................................................ucaccgggugaacacuugcG.................... 1 +seq_378270_x1 ......................................................................Acaccgggugaacacuugca.................... 1 +seq_376751_x4 ......................................................................ucaccggUugaacacuugca.................... 1 +seq_376735_x4 ......................................................................ucaccgggugaacacuuUca.................... 1 +seq_378080_x1 ......................................................................ucaccgggugGacacuugca.................... 1 +seq_377555_x2 ......................................................................ucaUcgggugaacacuugca.................... 1 +seq_378238_x1 ......................................................................ucaccgggugaacacuCgca.................... 1 +seq_378205_x1 ......................................................................ucaccgggugaacacuugUa.................... 1 +seq_376795_x4 ......................................................................ucGccgggugaacacuugca.................... 1 +seq_377824_x1 ......................................................................Gcaccgggugaacacuugca.................... 1 +seq_377154_x3 ......................................................................ucaccggguUaacacuugca.................... 1 +seq_377335_x2 ......................................................................ucaAcgggugaacacuugca.................... 1 +seq_378299_x1 ......................................................................ucaccgggugaacGcuugca.................... 1 +seq_377405_x2 ......................................................................ucaccgggugaaGacuugca.................... 1 +seq_376543_x5 ......................................................................uGaccgggugaacacuugca.................... 1 +seq_377850_x1 ......................................................................ucaccggNugaacacuugca.................... 1 +seq_377397_x2 ......................................................................ucaccgUgugaacacuugca.................... 1 +seq_376443_x6 ......................................................................ucaccgggugaaUacuugca.................... 1 +seq_376078_x8 ......................................................................ucaccgggGgaacacuugca.................... 1 +seq_376663_x5 ......................................................................ucaccgggugaacacuugcU.................... 1 +seq_375385_x10 ......................................................................ucaccgggugaacacuGgca.................... 1 +seq_376783_x4 ......................................................................ucaccgggugaacacuuAca.................... 1 +seq_378034_x1 ......................................................................ucaccgggugCacacuugca.................... 1 +seq_373975_x18 ......................................................................ucaccgggAgaacacuugca.................... 1 +seq_377802_x1 ......................................................................ucaccgggugaacacCugca.................... 1 +seq_378327_x1 ......................................................................ucaccgggugaacacuugAa.................... 1 +seq_377757_x1 ......................................................................ucaccggguCaacacuugca.................... 1 +seq_376943_x4 ......................................................................ucaccgggugaacaAuugca.................... 1 +seq_377615_x2 ......................................................................uAaccgggugaacacuugca.................... 1 +seq_375883_x9 ......................................................................ucaccgCgugaacacuugca.................... 1 +seq_377821_x1 ......................................................................ucaccgggugaacCcuugca.................... 1 +seq_377148_x3 ......................................................................ucaccgggugaacacuuCca.................... 1 +seq_378321_x1 ......................................................................ucaccCggugaacacuugca.................... 1 +seq_374729_x14 ......................................................................ucaccgggugaaAacuugca.................... 1 +seq_377541_x2 ......................................................................ucaccggAugaacacuugca.................... 1 +seq_377190_x3 ......................................................................ucaccgggugaacacuAgca.................... 1 +seq_377667_x2 ......................................................................ucaGcgggugaacacuugca.................... 1 +seq_377891_x1 ......................................................................ucaccAggugaacacuugca.................... 1 +seq_377046_x3 ......................................................................ucaccgggugaacaGuugca.................... 1 +seq_375220_x11 ......................................................................ucaccgggCgaacacuugca.................... 1 +seq_376573_x5 ......................................................................ucaccgggugaaGacuugcag................... 1 +seq_375990_x8 ......................................................................ucaccggCugaacacuugcag................... 1 +seq_372737_x26 ......................................................................ucaccgCgugaacacuugcag................... 1 +seq_376155_x7 ......................................................................Ccaccgggugaacacuugcag................... 1 +seq_377265_x3 ......................................................................uUaccgggugaacacuugcag................... 1 +seq_376521_x6 ......................................................................uAaccgggugaacacuugcag................... 1 +seq_378103_x1 ......................................................................ucNccgggugaacacuugcag................... 1 +seq_376923_x4 ......................................................................ucaccgggugaacacAugcag................... 1 +seq_375184_x12 ......................................................................ucaccgggugaacacuugcUg................... 1 +seq_377779_x1 ......................................................................ucaccgggugaacaGuugcag................... 1 +seq_377547_x2 ......................................................................ucaccgggugaacacuugcaA................... 1 +seq_377025_x3 ......................................................................ucUccgggugaacacuugcag................... 1 +seq_377788_x1 ......................................................................ucaccgggugaacacuNgcag................... 1 +seq_373937_x19 ......................................................................ucaccgggugaacacuuUcag................... 1 +seq_376563_x5 ......................................................................ucaccgUgugaacacuugcag................... 1 +seq_377651_x2 ......................................................................ucaccgggugaGcacuugcag................... 1 +seq_378132_x1 ......................................................................ucacGgggugaacacuugcag................... 1 +seq_372890_x25 ......................................................................ucaccgggugaacaAuugcag................... 1 +seq_374771_x14 ......................................................................ucaccgggugaacacuGgcag................... 1 +seq_377437_x2 ......................................................................ucaGcgggugaacacuugcag................... 1 +seq_378036_x1 ......................................................................ucaccCggugaacacuugcag................... 1 +seq_376347_x6 ......................................................................ucaccgAgugaacacuugcag................... 1 +seq_377515_x2 ......................................................................ucaccgggugaacCcuugcag................... 1 +seq_376807_x4 ......................................................................ucaccgggugUacacuugcag................... 1 +seq_370787_x41 ......................................................................ucaccgggCgaacacuugcag................... 1 +seq_375308_x11 ......................................................................ucaccgggugaacacCugcag................... 1 +seq_376253_x7 ......................................................................ucaccggguUaacacuugcag................... 1 +seq_378309_x1 ......................................................................ucaccgggugaacacuuAcag................... 1 +seq_367812_x78 ......................................................................ucacAgggugaacacuugcag................... 1 +seq_376931_x4 ......................................................................ucaccgggugGacacuugcag................... 1 +seq_376274_x7 ......................................................................ucaccggguAaacacuugcag................... 1 +seq_376911_x4 ......................................................................ucaccggUugaacacuugcag................... 1 +seq_376126_x8 ......................................................................ucaccUggugaacacuugcag................... 1 +seq_376583_x5 ......................................................................ucaccgggugaacacGugcag................... 1 +seq_372173_x31 ......................................................................ucaccgggugaaNacuugcag................... 1 +seq_376643_x5 ......................................................................ucaccgggugCacacuugcag................... 1 +seq_376668_x5 ......................................................................ucaccgggugaacaUuugcag................... 1 +seq_296962_x3796......................................................................ucaccgggugaacacuugcag................... 0 +seq_375958_x8 ......................................................................ucaccgggugaacacuugUag................... 1 +seq_376588_x5 ......................................................................ucaUcgggugaacacuugcag................... 1 +seq_375793_x9 ......................................................................ucaccgggugaacacuugcCg................... 1 +seq_377729_x2 ......................................................................ucaccgggugaUcacuugcag................... 1 +seq_375415_x10 ......................................................................ucaccgggugaacacuugAag................... 1 +seq_377067_x3 ......................................................................ucaccgggugaCcacuugcag................... 1 +seq_376603_x5 ......................................................................Acaccgggugaacacuugcag................... 1 +seq_376425_x6 ......................................................................ucaccgggugaacacuAgcag................... 1 +seq_376162_x7 ......................................................................Gcaccgggugaacacuugcag................... 1 +seq_377333_x2 ......................................................................uNaccgggugaacacuugcag................... 1 +seq_376070_x8 ......................................................................ucaccgggugaacacuugcaC................... 1 +seq_377786_x1 ......................................................................ucaccgggugaacacuugcGg................... 1 +seq_377723_x2 ......................................................................ucGccgggugaacacuugcag................... 1 +seq_373246_x22 ......................................................................ucaccgggugaaAacuugcag................... 1 +seq_376389_x6 ......................................................................ucaccAggugaacacuugcag................... 1 +seq_377355_x2 ......................................................................ucaccgggugaacacuugGag................... 1 +seq_377295_x3 ......................................................................ucaccgggugaacacuCgcag................... 1 +seq_377435_x2 ......................................................................ucaccggguCaacacuugcag................... 1 +seq_376835_x4 ......................................................................ucaccggAugaacacuugcag................... 1 +seq_378141_x1 ......................................................................ucaccggNugaacacuugcag................... 1 +seq_376204_x7 ......................................................................ucaccgggugaacacuuCcag................... 1 +seq_371788_x33 ......................................................................ucaccgggAgaacacuugcag................... 1 +seq_375535_x10 ......................................................................ucaccgggugaacUcuugcag................... 1 +seq_375766_x9 ......................................................................ucaccgggugaaUacuugcag................... 1 +seq_369371_x60 ......................................................................ucaccgggGgaacacuugcag................... 1 +seq_374375_x16 ......................................................................ucaccgggugaacacuugcaU................... 1 +seq_376983_x4 ......................................................................ucCccgggugaacacuugcag................... 1 +seq_376176_x7 ......................................................................ucaccgggugaacacuugNag................... 1 +seq_376593_x5 ......................................................................uGaccgggugaacacuugcag................... 1 +seq_376190_x7 ......................................................................ucacUgggugaacacuugcag................... 1 +seq_375625_x10 ......................................................................ucaAcgggugaacacuugcag................... 1 +seq_360848_x153 ......................................................................ucaccgAgugaacacuugcagu.................. 1 +seq_375545_x10 ......................................................................ucacNgggugaacacuugcagu.................. 1 +seq_358020_x178 ......................................................................ucaccggAugaacacuugcagu.................. 1 +seq_375330_x11 ......................................................................ucaccgggNgaacacuugcagu.................. 1 +seq_362156_x140 ......................................................................ucaccgggugaacacuugcaCu.................. 1 +seq_323285_x1320......................................................................ucaccgggGgaacacuugcagu.................. 1 +seq_366524_x92 ......................................................................ucaccggguAaacacuugcagu.................. 1 +seq_364238_x115 ......................................................................Gcaccgggugaacacuugcagu.................. 1 +seq_354892_x210 ......................................................................ucaccgggugCacacuugcagu.................. 1 +seq_361001_x150 ......................................................................ucaccgggugaacacuuCcagu.................. 1 +seq_368261_x70 ......................................................................ucaccCggugaacacuugcagu.................. 1 +seq_359745_x162 ......................................................................ucaccgggugGacacuugcagu.................. 1 +seq_345299_x327 ......................................................................ucaccgggugaacacuugcUgu.................. 1 +seq_369126_x62 ......................................................................ucaccgggugaacCcuugcagu.................. 1 +seq_377843_x1 ......................................................................ucaccgggugaacacuuNcagu.................. 1 +seq_369064_x62 ......................................................................ucaccgggugaacacuugcaAu.................. 1 +seq_357471_x183 ......................................................................ucaccgggugaacacCugcagu.................. 1 +seq_362296_x138 ......................................................................ucaccgggugaacacuugcaUu.................. 1 +seq_376287_x6 ......................................................................ucNccgggugaacacuugcagu.................. 1 +seq_372789_x26 ......................................................................ucaccgggugaGcacuugcagu.................. 1 +cel-miR-37 ......................................................................ucaccgggugaacacuugcagu.................. 0 +seq_371028_x39 ......................................................................ucaccgggugaacaGuugcagu.................. 1 +seq_367490_x83 ......................................................................uNaccgggugaacacuugcagu.................. 1 +seq_357284_x187 ......................................................................ucaccgggugaacacuugcagA.................. 1 +seq_341170_x448 ......................................................................ucaccgggugaacacuuUcagu.................. 1 +seq_332159_x841 ......................................................................ucaccgggAgaacacuugcagu.................. 1 +seq_342045_x391 ......................................................................ucaccgggugaacacuugcCgu.................. 1 +seq_370868_x40 ......................................................................ucaccgggugaacGcuugcagu.................. 1 +seq_372468_x28 ......................................................................ucaccgggugaUcacuugcagu.................. 1 +seq_335193_x686 ......................................................................ucaccgggugaaAacuugcagu.................. 1 +seq_361297_x146 ......................................................................ucaccAggugaacacuugcagu.................. 1 +seq_330395_x911 ......................................................................ucaccgggugaaNacuugcagu.................. 1 +seq_341618_x427 ......................................................................ucaccgggugaacaAuugcagu.................. 1 +seq_371222_x38 ......................................................................ucaccggNugaacacuugcagu.................. 1 +seq_356323_x196 ......................................................................ucaccgggugaaUacuugcagu.................. 1 +seq_352711_x226 ......................................................................ucaccgggugaaGacuugcagu.................. 1 +seq_362434_x135 ......................................................................ucaccgggugaacUcuugcagu.................. 1 +seq_349174_x270 ......................................................................ucaccgggugaacacuugcagC.................. 1 +seq_363749_x128 ......................................................................ucaUcgggugaacacuugcagu.................. 1 +seq_354041_x214 ......................................................................uAaccgggugaacacuugcagu.................. 1 +seq_365022_x107 ......................................................................uUaccgggugaacacuugcagu.................. 1 +seq_331306_x853 ......................................................................ucaccgggCgaacacuugcagu.................. 1 +seq_363491_x129 ......................................................................ucaccgggugaacacuuAcagu.................. 1 +seq_366431_x93 ......................................................................Ccaccgggugaacacuugcagu.................. 1 +seq_335879_x674 ......................................................................ucaccgCgugaacacuugcagu.................. 1 +seq_365648_x102 ......................................................................ucaccgggugUacacuugcagu.................. 1 +seq_371260_x37 ......................................................................ucaccgggugaacacuugGagu.................. 1 +seq_363999_x122 ......................................................................ucaccggguCaacacuugcagu.................. 1 +seq_375694_x9 ......................................................................Ncaccgggugaacacuugcagu.................. 1 +seq_368190_x71 ......................................................................Acaccgggugaacacuugcagu.................. 1 +seq_354469_x212 ......................................................................ucaccggguUaacacuugcagu.................. 1 +seq_358731_x174 ......................................................................ucaccgggugaacacuAgcagu.................. 1 +seq_360693_x155 ......................................................................ucaccgggugaacacuugNagu.................. 1 +seq_375565_x10 ......................................................................ucaNcgggugaacacuugcagu.................. 1 +seq_363098_x131 ......................................................................ucaccgggugaacacGugcagu.................. 1 +seq_319013_x1597......................................................................ucacAgggugaacacuugcagu.................. 1 +seq_356905_x190 ......................................................................ucaccUggugaacacuugcagu.................. 1 +seq_340154_x508 ......................................................................ucaccgggugaacacuGgcagu.................. 1 +seq_355311_x207 ......................................................................ucaccggCugaacacuugcagu.................. 1 +seq_149538_x90904......................................................................ucaccgggugaacacuugcagu.................. 0 +seq_366051_x97 ......................................................................ucaccgggugaacaUuugcagu.................. 1 +seq_373223_x23 ......................................................................ucacGgggugaacacuugcagu.................. 1 +seq_364468_x114 ......................................................................ucaccgUgugaacacuugcagu.................. 1 +seq_375974_x8 ......................................................................ucUccgggugaacacuugcagu.................. 1 +seq_363877_x122 ......................................................................ucaccgggugaacacuNgcagu.................. 1 +seq_368539_x67 ......................................................................ucaccgggugaacacuugcGgu.................. 1 +seq_377118_x3 ......................................................................ucaccNggugaacacuugcagu.................. 1 +seq_344621_x340 ......................................................................ucaAcgggugaacacuugcagu.................. 1 +seq_367149_x86 ......................................................................ucaGcgggugaacacuugcagu.................. 1 +seq_372496_x27 ......................................................................ucGccgggugaacacuugcagu.................. 1 +seq_369665_x55 ......................................................................ucaccgggugaacacAugcagu.................. 1 +seq_366337_x94 ......................................................................ucaccggUugaacacuugcagu.................. 1 +seq_362569_x133 ......................................................................ucaccgggugaacacuugUagu.................. 1 +seq_365339_x104 ......................................................................ucaccgggugaacacuugAagu.................. 1 +seq_369188_x61 ......................................................................ucaccgggugaCcacuugcagu.................. 1 +seq_371480_x36 ......................................................................ucCccgggugaacacuugcagu.................. 1 +seq_351534_x242 ......................................................................ucaccgggugaacacuugcagG.................. 1 +seq_365129_x106 ......................................................................ucacUgggugaacacuugcagu.................. 1 +seq_365443_x103 ......................................................................uGaccgggugaacacuugcagu.................. 1 +seq_359076_x170 ......................................................................ucaccgggugaacacuCgcagu.................. 1 +seq_300758_x2851......................................................................ucaccgggugaacacuugcaguU................. 1 +seq_377949_x1 ......................................................................ucaccgggugaacacGugcagug................. 1 +seq_377822_x1 ......................................................................ucaAcgggugaacacuugcagug................. 1 +seq_373861_x19 ......................................................................ucaccgggugaacacuugcagug................. 0 +seq_373378_x22 ......................................................................ucaccgggugaacacuugcaguC................. 1 +seq_377687_x2 ......................................................................ucaccgggugaacacuugcUgug................. 1 +seq_377977_x1 ......................................................................ucaccgggugaacacuugcagGg................. 1 +seq_378118_x1 ......................................................................uAaccgggugaacacuugcagug................. 1 +seq_325900_x1251......................................................................ucaccgggugaacacuugcaguA................. 1 +seq_376855_x4 ......................................................................ucaccgggugaacacuugcagugC................ 1 +seq_377858_x1 ......................................................................ucaccgggugaacacuugcaguCg................ 1 +seq_378276_x1 ......................................................................ucaccgggugaacacuugcaguUg................ 1 +seq_377629_x2 ......................................................................ucaccgggugaacacuugcagugg................ 0 +seq_378081_x1 ......................................................................ucaccgggugaacacuugcaguAg................ 1 +seq_377256_x3 ......................................................................ucaccgggugaacacuugcagugA................ 1 +seq_378246_x1 ......................................................................ucaccgggugaacacuugcagugUu............... 1 +seq_378008_x1 ......................................................................uUaccgggugaacacuugcaguggu............... 1 +seq_378261_x1 ......................................................................ucaccgggugaacacuugcaguggu............... 0 +seq_377773_x1 ......................................................................ucaccgggugaacacuugcaguggA............... 1 +seq_377896_x1 ......................................................................ucaccgggugaacacuugcaguggCc.............. 1 +seq_377447_x2 ......................................................................ucaccgggugaacacuugcagugAuc.............. 1 +seq_377411_x2 ......................................................................ucaccgggugaacacuugcagugguUc............. 1 +seq_378068_x1 ......................................................................ucaccgggugaacacuugcaguggucA............. 1 +seq_377899_x1 .......................................................................caccgggugaacacuugca.................... 0 +seq_373131_x23 .......................................................................caccgggugaacacuugcag................... 0 +seq_377921_x1 .......................................................................cGccgggugaacacuugcag................... 1 +seq_377857_x1 .......................................................................caccgggugaacaUuugcag................... 1 +seq_377943_x1 .......................................................................caAcgggugaacacuugcag................... 1 +seq_378214_x1 .......................................................................caccgggugaCcacuugcagu.................. 1 +seq_374011_x18 .......................................................................caccgggGgaacacuugcagu.................. 1 +seq_377835_x1 .......................................................................caccgggugaacacNugcagu.................. 1 +seq_378263_x1 .......................................................................caccgggugaaGacuugcagu.................. 1 +seq_378018_x1 .......................................................................caccgggugaacNcuugcagu.................. 1 +seq_376086_x8 .......................................................................caAcgggugaacacuugcagu.................. 1 +seq_377900_x1 .......................................................................cNccgggugaacacuugcagu.................. 1 +seq_377928_x1 .......................................................................caccgggugaacacGugcagu.................. 1 +seq_377461_x2 .......................................................................caccgggugaacacuuCcagu.................. 1 +seq_376688_x5 .......................................................................caccgggugaacacuugcagC.................. 1 +seq_376260_x7 .......................................................................caccgggugaaAacuugcagu.................. 1 +seq_378164_x1 .......................................................................caccgggugaacaAuugcagu.................. 1 +seq_377715_x2 .......................................................................caccgggugaacacuCgcagu.................. 1 +seq_378016_x1 .......................................................................caccggguCaacacuugcagu.................. 1 +seq_376755_x4 .......................................................................Uaccgggugaacacuugcagu.................. 1 +seq_377795_x1 .......................................................................caccAggugaacacuugcagu.................. 1 +seq_377649_x2 .......................................................................caccgggugaacacuuAcagu.................. 1 +seq_376553_x5 .......................................................................caccgggCgaacacuugcagu.................. 1 +seq_377804_x1 .......................................................................caccggAugaacacuugcagu.................. 1 +seq_378111_x1 .......................................................................caccgggugaacacuAgcagu.................. 1 +seq_377022_x3 .......................................................................caccgggugaacacuugcagA.................. 1 +seq_378030_x1 .......................................................................caccgggugaacacuGgcagu.................. 1 +seq_376419_x6 .......................................................................caccgggAgaacacuugcagu.................. 1 +seq_377990_x1 .......................................................................cCccgggugaacacuugcagu.................. 1 +seq_348053_x285 .......................................................................caccgggugaacacuugcagu.................. 0 +seq_377904_x1 .......................................................................cGccgggugaacacuugcagu.................. 1 +seq_377202_x3 .......................................................................caccgggugaacacuugcUgu.................. 1 +seq_378161_x1 .......................................................................cacGgggugaacacuugcagu.................. 1 +seq_378003_x1 .......................................................................caccgggugaacacuugcagCg................. 1 +seq_353384_x221 .......................................................................caccgggugaacacuugcaguU................. 1 +seq_361874_x141 .......................................................................caccgggugaacacuugcaguA................. 1 +seq_374439_x16 .......................................................................caccgggugaacacuugcagug................. 0 +seq_377286_x3 .......................................................................caccgggugaacacuugcaguC................. 1 +seq_378303_x1 .......................................................................caccgggugaacacuugcagugC................ 1 +seq_378195_x1 .......................................................................caccgggugaacacuugcagugU................ 1 +seq_378250_x1 .......................................................................caccgggugaacacuugcaguUg................ 1 +seq_376094_x8 ........................................................................accgggugaacacuugca.................... 0 +seq_378188_x1 ........................................................................accgggCgaacacuugca.................... 1 +seq_378220_x1 ........................................................................accgggugaacacAugca.................... 1 +seq_378102_x1 ........................................................................accgggAgaacacuugcag................... 1 +seq_377805_x1 ........................................................................accCggugaacacuugcag................... 1 +seq_378298_x1 ........................................................................accgggugaacacuugcCg................... 1 +seq_377965_x1 ........................................................................accgggCgaacacuugcag................... 1 +seq_370405_x44 ........................................................................accgggugaacacuugcag................... 0 +seq_378289_x1 ........................................................................accgggugaacacCugcag................... 1 +seq_377998_x1 ........................................................................accggUugaacacuugcag................... 1 +seq_378052_x1 ........................................................................aGcgggugaacacuugcag................... 1 +seq_377609_x2 ........................................................................accgggugaacacuAgcagu.................. 1 +seq_377671_x2 ........................................................................accggguAaacacuugcagu.................. 1 +seq_378237_x1 ........................................................................accgggugCacacuugcagu.................. 1 +seq_375721_x9 ........................................................................accgggugaaAacuugcagu.................. 1 +seq_333757_x746 ........................................................................accgggugaacacuugcagu.................. 0 +seq_378184_x1 ........................................................................accgggugaacacuugcUgu.................. 1 +seq_377441_x2 ........................................................................accAggugaacacuugcagu.................. 1 +seq_378101_x1 ........................................................................accgggugaaGacuugcagu.................. 1 +seq_377611_x2 ........................................................................accgggugGacacuugcagu.................. 1 +seq_377721_x2 ........................................................................accgggugaacacuugUagu.................. 1 +seq_378156_x1 ........................................................................accgggugaacGcuugcagu.................. 1 +seq_376847_x4 ........................................................................accggguCaacacuugcagu.................. 1 +seq_377385_x2 ........................................................................accUggugaacacuugcagu.................. 1 +seq_378307_x1 ........................................................................accggCugaacacuugcagu.................. 1 +seq_378076_x1 ........................................................................accgggugaacacCugcagu.................. 1 +seq_376823_x4 ........................................................................accgggugaacCcuugcagu.................. 1 +seq_375685_x9 ........................................................................accgggugaacacuugcagC.................. 1 +seq_377160_x3 ........................................................................accggguUaacacuugcagu.................. 1 +seq_377661_x2 ........................................................................accgggugaacacuGgcagu.................. 1 +seq_377601_x2 ........................................................................accggUugaacacuugcagu.................. 1 +seq_377172_x3 ........................................................................accgAgugaacacuugcagu.................. 1 +seq_376473_x6 ........................................................................accgCgugaacacuugcagu.................. 1 +seq_375982_x8 ........................................................................accgggugaacacuugcagA.................. 1 +seq_373108_x23 ........................................................................accgggugaacacuugcCgu.................. 1 +seq_377549_x2 ........................................................................accgUgugaacacuugcagu.................. 1 +seq_375124_x12 ........................................................................accCggugaacacuugcagu.................. 1 +seq_377226_x3 ........................................................................accgggugaacacuuCcagu.................. 1 +seq_377847_x1 ........................................................................accgggugaaUacuugcagu.................. 1 +seq_377973_x1 ........................................................................Cccgggugaacacuugcagu.................. 1 +seq_378201_x1 ........................................................................aUcgggugaacacuugcagu.................. 1 +seq_373485_x21 ........................................................................accgggugaacacuuUcagu.................. 1 +seq_377169_x3 ........................................................................accgggugaacaAuugcagu.................. 1 +seq_376598_x5 ........................................................................accgggugaacacuugcaCu.................. 1 +seq_377277_x3 ........................................................................accgggugUacacuugcagu.................. 1 +seq_371920_x33 ........................................................................accgggCgaacacuugcagu.................. 1 +seq_376971_x4 ........................................................................accgggugaacaNuugcagu.................. 1 +seq_377789_x1 ........................................................................accgggugaacacuugcaUu.................. 1 +seq_377184_x3 ........................................................................accgggugaacacuugcagG.................. 1 +seq_374359_x16 ........................................................................accgggGgaacacuugcagu.................. 1 +seq_377393_x2 ........................................................................accgggugaacacGugcagu.................. 1 +seq_378233_x1 ........................................................................Uccgggugaacacuugcagu.................. 1 +seq_377986_x1 ........................................................................accgggugaacacuugGagu.................. 1 +seq_378002_x1 ........................................................................accgggugaacacuuAcagu.................. 1 +seq_377593_x2 ........................................................................aGcgggugaacacuugcagu.................. 1 +seq_378152_x1 ........................................................................accgggugaacaUuugcagu.................. 1 +seq_377713_x2 ........................................................................aAcgggugaacacuugcagu.................. 1 +seq_375148_x12 ........................................................................accgggAgaacacuugcagu.................. 1 +seq_376951_x4 ........................................................................acAgggugaacacuugcagu.................. 1 +seq_377322_x3 ........................................................................acUgggugaacacuugcagu.................. 1 +seq_376341_x6 ........................................................................accgggugaacacuugAagu.................. 1 +seq_377930_x1 ........................................................................accggAugaacacuugcagu.................. 1 +seq_374519_x16 ........................................................................accgggugaacacuugcaguA................. 1 +seq_372411_x29 ........................................................................accgggugaacacuugcaguU................. 1 +seq_378026_x1 ........................................................................accgggugaacacuugcaguUg................ 1 +seq_377861_x1 .........................................................................ccgggugaacacuugcag................... 0 +seq_378241_x1 .........................................................................Ucgggugaacacuugcag................... 1 +seq_377301_x3 .........................................................................ccgggugaacacuugcagu.................. 0 +seq_377407_x2 .........................................................................Ucgggugaacacuugcagu.................. 1 +seq_377810_x1 ..........................................................................cgggCgaacacuugcagu.................. 1 +seq_377232_x3 ..........................................................................cgggugaacacuugcagu.................. 0 + + + +>chrII:11534525-11540624_17 +score total 17007.3 +score for star read(s) 3.9 +score for read counts 16996.7 +score for mfe 2.1 +score for randfold 1.6 +score for cons. seed 3 +miRNA with same seed cbr-miR-35 +total read count 33350 +mature read count 33300 +loop read count 0 +star read count 50 +exp ffffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSSlllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMfffffffffffffffffff +obs ffffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSSlllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMfffffffffffffffffff +pri_seq uggugucuccgaaccuccuguccgcaccucaguggauguaugccaugaugauaagauaucagaaauccuaucaccggguguacaucagcuaaggugcggguacaggugcau +pri_struct .(((........))).(((((((((((((.(((.((((((((((.((.(((((.(((.......))).))))).)))))))))))).))).))))))))..)))))..... #MM +seq_377533_x2 ..............................aguggauguaugccaugaugau........................................................... 0 +seq_378330_x1 ..............................aguggUuguaugccaugaugaua.......................................................... 1 +seq_372324_x29 ..............................aguggauguaugccaugaugaua.......................................................... 0 +seq_377836_x1 ..............................aguggauguaugccaugUugaua.......................................................... 1 +seq_377982_x1 ..............................aguggauguaugcUaugaugaua.......................................................... 1 +seq_377969_x1 ..............................aguggauguaugccaugaAgaua.......................................................... 1 +seq_377763_x1 ..............................aguggauguaugccauUaugaua.......................................................... 1 +seq_378104_x1 ..............................aguggauguUugccaugaugaua.......................................................... 1 +seq_377950_x1 ..............................aguggauguauUccaugaugaua.......................................................... 1 +seq_378126_x1 ..............................aguggauguaugccaugaugauG.......................................................... 1 +seq_378062_x1 ..............................aguggauguaugccaugaugCua.......................................................... 1 +seq_377681_x2 ..............................aguggaugGaugccaugaugaua.......................................................... 1 +seq_377987_x1 ..............................aguggauguaugccaugaugGua.......................................................... 1 +seq_376329_x6 ..............................aguggauguaugccaugaugauaU......................................................... 1 +seq_378173_x1 ...............................guggauguaugccaugaugauaaga....................................................... 0 +seq_378011_x1 ..................................................................ccGaucaccggguguacaucagcu..................... 1 +seq_377862_x1 ...................................................................cuaucaccggguguacaucag....................... 0 +seq_377748_x1 ...................................................................Auaucaccggguguacaucagc...................... 1 +seq_375595_x10 ...................................................................cuaucaccggguguacaucagc...................... 0 +seq_377699_x2 ...................................................................cuaucaccggguguacaucagcu..................... 0 +seq_377832_x1 ...................................................................cuaucaccggguguacaucagUu..................... 1 +seq_378096_x1 ...................................................................cuaucaccggguguacaGcagcu..................... 1 +seq_377817_x1 ...................................................................cuaucaccggguguacaucagcA..................... 1 +seq_378035_x1 ...................................................................cCaucaccggguguacaucagcuaa................... 1 +seq_377679_x2 ....................................................................Aaucaccggguguacaucagcu..................... 1 +seq_369825_x52 ....................................................................Aaucaccggguguacaucagcuaa................... 1 +seq_377760_x1 .....................................................................aucaccggguguacaucag....................... 0 +seq_378000_x1 .....................................................................Cucaccggguguacaucagcua.................... 1 +seq_378278_x1 .....................................................................aucaccggguguacaucaCcua.................... 1 +seq_376431_x6 .....................................................................aucaccggguguacaucagcua.................... 0 +seq_377784_x1 .....................................................................aucaccggguguacaucaUcuaa................... 1 +seq_371721_x34 .....................................................................aucaccggguguacaucagcuaa................... 0 +seq_378142_x1 .....................................................................aGcaccggguguacaucagcuaa................... 1 +seq_378021_x1 .....................................................................aAcaccggguguacaucagcuaa................... 1 +seq_377769_x1 .....................................................................aucaccgggAguacaucagcuaa................... 1 +seq_374423_x16 .....................................................................Cucaccggguguacaucagcuaa................... 1 +seq_378169_x1 .....................................................................aucaccCgguguacaucagcuaa................... 1 +seq_377968_x1 .....................................................................aucaAcggguguacaucagcuaa................... 1 +seq_377627_x2 .....................................................................aucaccggguguacaucagcuaaA.................. 1 +seq_377489_x2 .....................................................................aucaccggguguacaucagcuaaU.................. 1 +seq_378296_x1 ......................................................................ucaccggUuguacaucag....................... 1 +seq_377770_x1 ......................................................................ucaccggguguacaucNg....................... 1 +seq_377477_x2 ......................................................................ucaccggguguacaucaA....................... 1 +seq_372550_x27 ......................................................................ucaccggguguacaucag....................... 0 +seq_368936_x64 ......................................................................ucaccggguguacaucagc...................... 0 +seq_377979_x1 ......................................................................ucaccggguguaNaucagc...................... 1 +seq_377984_x1 ......................................................................ucaccggguguacaucaUc...................... 1 +seq_377865_x1 ......................................................................ucaccggguguacaucaAc...................... 1 +seq_377751_x1 ......................................................................ucaccgggCguacaucagc...................... 1 +seq_378287_x1 ......................................................................ucaccgggugGacaucagc...................... 1 +seq_377845_x1 ......................................................................ucaccgggGguacaucagc...................... 1 +seq_377833_x1 ......................................................................ucaccgggugCacaucagc...................... 1 +seq_378221_x1 ......................................................................ucaccggguguacCucagc...................... 1 +seq_378110_x1 ......................................................................ucacUggguguacaucagc...................... 1 +seq_377981_x1 ......................................................................ucaccggguguaUaucagcu..................... 1 +seq_378183_x1 ......................................................................ucaccggguguaNaucagcu..................... 1 +seq_378231_x1 ......................................................................ucaccggguguacaucagGu..................... 1 +seq_377689_x2 ......................................................................ucaccggguguacaucaUcu..................... 1 +seq_378193_x1 ......................................................................ucaccggguguacaGcagcu..................... 1 +seq_377823_x1 ......................................................................ucaccgggugCacaucagcu..................... 1 +seq_377826_x1 ......................................................................ucaccgggCguacaucagcu..................... 1 +seq_357837_x183 ......................................................................ucaccggguguacaucagcu..................... 0 +seq_378217_x1 ......................................................................ucaccgggGguacaucagcu..................... 1 +seq_377799_x1 ......................................................................ucaccggguguacauAagcu..................... 1 +seq_377485_x2 ......................................................................ucaccgggugGacaucagcu..................... 1 +seq_377942_x1 ......................................................................ucaccgggugAacaucagcu..................... 1 +seq_376359_x6 ......................................................................ucacAggguguacaucagcu..................... 1 +seq_378125_x1 ......................................................................ucaccggguguacUucagcu..................... 1 +seq_377759_x1 ......................................................................ucaccggguguacaucagUu..................... 1 +seq_378324_x1 ......................................................................ucaccggguguacaCcagcu..................... 1 +seq_378274_x1 ......................................................................ucaccUgguguacaucagcu..................... 1 +seq_377967_x1 ......................................................................ucaccggguguacaucaCcua.................... 1 +seq_375775_x9 ......................................................................ucaccgggugCacaucagcua.................... 1 +seq_377926_x1 ......................................................................ucaccggguguacaucUgcua.................... 1 +seq_377028_x3 ......................................................................ucaccggguguacaucagNua.................... 1 +seq_377911_x1 ......................................................................ucaccggguCuacaucagcua.................... 1 +seq_377625_x2 ......................................................................ucaccggguguaUaucagcua.................... 1 +seq_377735_x2 ......................................................................ucaccggguguaGaucagcua.................... 1 +seq_378240_x1 ......................................................................ucaccggguguacauGagcua.................... 1 +seq_377703_x2 ......................................................................Gcaccggguguacaucagcua.................... 1 +seq_376299_x6 ......................................................................ucaccgggCguacaucagcua.................... 1 +seq_377091_x3 ......................................................................ucaccggguguacaucagcuC.................... 1 +seq_378044_x1 ......................................................................ucaccggguguacaGcagcua.................... 1 +seq_377016_x3 ......................................................................ucaccgggugGacaucagcua.................... 1 +seq_377040_x3 ......................................................................ucaccgggugAacaucagcua.................... 1 +seq_377587_x2 ......................................................................ucaccggguguacaucagcGa.................... 1 +seq_377677_x2 ......................................................................ucaccggguUuacaucagcua.................... 1 +seq_377316_x3 ......................................................................ucaccggguguacaucagcAa.................... 1 +seq_378223_x1 ......................................................................ucaccggguAuacaucagcua.................... 1 +seq_378198_x1 ......................................................................ucaccggguguacaucagGua.................... 1 +seq_374137_x18 ......................................................................ucaccgggAguacaucagcua.................... 1 +seq_378149_x1 ......................................................................uAaccggguguacaucagcua.................... 1 +seq_328388_x1017......................................................................ucaccggguguacaucagcua.................... 0 +seq_377771_x1 ......................................................................ucaccggguguCcaucagcua.................... 1 +seq_372264_x30 ......................................................................ucacAggguguacaucagcua.................... 1 +seq_377922_x1 ......................................................................ucaAcggguguacaucagcua.................... 1 +seq_376558_x5 ......................................................................ucaccggguguacaucagcuU.................... 1 +seq_376843_x4 ......................................................................ucaccggguguacaucagAua.................... 1 +seq_376239_x7 ......................................................................ucaccggguguaNaucagcua.................... 1 +seq_378048_x1 ......................................................................ucaccggAuguacaucagcua.................... 1 +seq_378097_x1 ......................................................................Ccaccggguguacaucagcua.................... 1 +seq_377864_x1 ......................................................................ucaccggguguacUucagcua.................... 1 +seq_378235_x1 ......................................................................ucaccAgguguacaucagcua.................... 1 +seq_376467_x6 ......................................................................ucaccggguguacaucaUcua.................... 1 +seq_377501_x2 ......................................................................ucaccggguguacaucaAcua.................... 1 +seq_378310_x1 ......................................................................ucaccggguguacaucagcuG.................... 1 +seq_376967_x4 ......................................................................ucaccggguguacaucCgcua.................... 1 +seq_378279_x1 ......................................................................ucaGcggguguacaucagcua.................... 1 +seq_377337_x2 ......................................................................uUaccggguguacaucagcua.................... 1 +seq_375319_x11 ......................................................................ucaccgggGguacaucagcua.................... 1 +seq_378227_x1 ......................................................................Ncaccggguguacaucagcua.................... 1 +seq_378166_x1 ......................................................................ucaccggguguacaucagcCa.................... 1 +seq_377262_x3 ......................................................................ucaccgCguguacaucagcua.................... 1 +seq_377043_x3 ......................................................................ucaccggguguacaucagUua.................... 1 +seq_378148_x1 ......................................................................ucaccggguguacGucagcua.................... 1 +seq_376883_x4 ......................................................................ucaccggguguacauAagcua.................... 1 +seq_377244_x3 ......................................................................ucaccggguguaAaucagcua.................... 1 +seq_377139_x3 ......................................................................ucacUggguguacaucagcua.................... 1 +seq_378225_x1 ......................................................................ucaNcggguguacaucagcua.................... 1 +seq_376919_x4 ......................................................................ucaccUgguguacaucagcua.................... 1 +seq_377223_x3 ......................................................................ucaccggCuguacaucagcua.................... 1 +seq_367890_x78 ......................................................................ucaccggguguaAaucagcuaa................... 1 +seq_344961_x338 ......................................................................ucaccggguguacaucagcuaU................... 1 +seq_370908_x40 ......................................................................ucaccggAuguacaucagcuaa................... 1 +seq_372049_x31 ......................................................................ucaccAgguguacaucagcuaa................... 1 +seq_375374_x11 ......................................................................ucaccggguguacGucagcuaa................... 1 +seq_370360_x45 ......................................................................ucaccggguguacaucagcuUa................... 1 +seq_371334_x37 ......................................................................ucaUcggguguacaucagcuaa................... 1 +seq_376365_x6 ......................................................................ucaccggguguacauGagcuaa................... 1 +seq_372964_x24 ......................................................................ucaccggguguacaucagcGaa................... 1 +seq_374869_x13 ......................................................................ucaccggguguUcaucagcuaa................... 1 +seq_375352_x11 ......................................................................ucaccggguguCcaucagcuaa................... 1 +seq_355926_x199 ......................................................................ucaccggguguacaucaUcuaa................... 1 +seq_352937_x224 ......................................................................ucaccgggCguacaucagcuaa................... 1 +seq_377737_x2 ......................................................................ucNccggguguacaucagcuaa................... 1 +seq_360066_x159 ......................................................................ucaccgggAguacaucagcuaa................... 1 +seq_370622_x42 ......................................................................ucaccggguUuacaucagcuaa................... 1 +seq_371585_x34 ......................................................................ucaccUgguguacaucagcuaa................... 1 +seq_374241_x17 ......................................................................ucaGcggguguacaucagcuaa................... 1 +seq_240442_x25577......................................................................ucaccggguguacaucagcuaa................... 0 +seq_373527_x21 ......................................................................uNaccggguguacaucagcuaa................... 1 +seq_342825_x384 ......................................................................ucacAggguguacaucagcuaa................... 1 +seq_370080_x48 ......................................................................uAaccggguguacaucagcuaa................... 1 +seq_378040_x1 ......................................................................ucaccgggNguacaucagcuaa................... 1 +seq_369773_x52 ......................................................................ucaccggguguaUaucagcuaa................... 1 +cel-miR-40 ......................................................................ucaccggguguacaucagcuaa................... 0 +seq_374785_x14 ......................................................................ucCccggguguacaucagcuaa................... 1 +seq_368871_x65 ......................................................................ucaAcggguguacaucagcuaa................... 1 +seq_349713_x268 ......................................................................ucaccggguguaNaucagcuaa................... 1 +seq_374841_x14 ......................................................................ucaccggguguacaucagcAaa................... 1 +seq_371619_x34 ......................................................................ucacUggguguacaucagcuaa................... 1 +seq_375585_x10 ......................................................................ucaccggguguacaucagGuaa................... 1 +seq_370828_x40 ......................................................................ucaccggCuguacaucagcuaa................... 1 +seq_372915_x25 ......................................................................ucaccggguguacCucagcuaa................... 1 +seq_370449_x44 ......................................................................uUaccggguguacaucagcuaa................... 1 +seq_372111_x31 ......................................................................ucaccggguCuacaucagcuaa................... 1 +seq_372604_x27 ......................................................................uGaccggguguacaucagcuaa................... 1 +seq_368331_x70 ......................................................................ucaccggguguacaucagAuaa................... 1 +seq_376698_x5 ......................................................................ucaNcggguguacaucagcuaa................... 1 +seq_375515_x10 ......................................................................ucaccggguguacaucagcCaa................... 1 +seq_368401_x69 ......................................................................ucaccggguguacaucaCcuaa................... 1 +seq_374487_x16 ......................................................................Gcaccggguguacaucagcuaa................... 1 +seq_370222_x46 ......................................................................ucaccggguguacaucagNuaa................... 1 +seq_374155_x18 ......................................................................ucaccggguAuacaucagcuaa................... 1 +seq_374999_x13 ......................................................................ucaccCgguguacaucagcuaa................... 1 +seq_373648_x20 ......................................................................Ccaccggguguacaucagcuaa................... 1 +seq_366797_x89 ......................................................................ucaccggguguacaucagcuaC................... 1 +seq_375363_x11 ......................................................................ucaccggguguGcaucagcuaa................... 1 +seq_371145_x39 ......................................................................ucaccggguguacaucagcuGa................... 1 +seq_347479_x287 ......................................................................ucaccgggGguacaucagcuaa................... 1 +seq_376713_x5 ......................................................................ucUccggguguacaucagcuaa................... 1 +seq_375966_x8 ......................................................................ucGccggguguacaucagcuaa................... 1 +seq_375038_x13 ......................................................................Acaccggguguacaucagcuaa................... 1 +seq_351287_x247 ......................................................................ucaccgggugGacaucagcuaa................... 1 +seq_371953_x32 ......................................................................ucaccgAguguacaucagcuaa................... 1 +seq_377058_x3 ......................................................................Ncaccggguguacaucagcuaa................... 1 +seq_370314_x46 ......................................................................ucaccggguguacaucGgcuaa................... 1 +seq_375665_x10 ......................................................................ucaccggguguacaCcagcuaa................... 1 +seq_375865_x9 ......................................................................ucaccggNuguacaucagcuaa................... 1 +seq_367573_x83 ......................................................................ucaccggguguacaucagcuCa................... 1 +seq_364353_x115 ......................................................................ucaccgCguguacaucagcuaa................... 1 +seq_369249_x61 ......................................................................ucaccggguguaGaucagcuaa................... 1 +seq_369877_x52 ......................................................................ucaccggguguacaucUgcuaa................... 1 +seq_369720_x53 ......................................................................ucaccggguguacaucaAcuaa................... 1 +seq_374101_x18 ......................................................................ucaccggUuguacaucagcuaa................... 1 +seq_367406_x84 ......................................................................ucaccggguguacaucCgcuaa................... 1 +seq_369490_x59 ......................................................................ucaccgggugAacaucagcuaa................... 1 +seq_375703_x9 ......................................................................ucaccggguguacaucagcuaG................... 1 +seq_376134_x7 ......................................................................ucaccggguguacaAcagcuaa................... 1 +seq_368118_x72 ......................................................................ucaccggguguacaucagUuaa................... 1 +seq_348903_x271 ......................................................................ucaccgggugCacaucagcuaa................... 1 +seq_377617_x2 ......................................................................ucacGggguguacaucagcuaa................... 1 +seq_364804_x110 ......................................................................ucaccggguguacauAagcuaa................... 1 +seq_366707_x90 ......................................................................ucaccggguguacauUagcuaa................... 1 +seq_373899_x19 ......................................................................ucaccgUguguacaucagcuaa................... 1 +seq_370175_x47 ......................................................................ucaccggguguacaucNgcuaa................... 1 +seq_372711_x26 ......................................................................ucaccggguguacaGcagcuaa................... 1 +seq_369549_x59 ......................................................................ucaccggguguacUucagcuaa................... 1 +seq_343569_x355 ......................................................................ucaccggguguacaucagcuaaU.................. 1 +seq_372440_x28 ......................................................................ucaccggguguacaucagcuaaC.................. 1 +seq_374029_x18 ......................................................................ucaccggguguacaucagcuaag.................. 0 +seq_378259_x1 ......................................................................ucaccgggAguacaucagcuaag.................. 1 +seq_339613_x541 ......................................................................ucaccggguguacaucagcuaaA.................. 1 +seq_377595_x2 ......................................................................ucaccggguguacaucagcuaagU................. 1 +seq_377749_x1 ......................................................................ucaccggguguacaucagcuaagC................. 1 +seq_378291_x1 ......................................................................ucaccggguguacaucagcuaagg................. 0 +seq_378129_x1 ......................................................................ucaccggguguacaucagcuaaAg................. 1 +seq_378039_x1 ......................................................................ucaccggguguacaucagcuaaggC................ 1 +seq_376232_x7 .......................................................................caccggguguacaucagcua.................... 0 +seq_377964_x1 .......................................................................caccggguguacNucagcuaa................... 1 +seq_377241_x3 .......................................................................caccggguguaGaucagcuaa................... 1 +seq_377764_x1 .......................................................................Uaccggguguacaucagcuaa................... 1 +seq_377933_x1 .......................................................................caccUgguguacaucagcuaa................... 1 +seq_377635_x2 .......................................................................caccgggugAacaucagcuaa................... 1 +seq_368044_x74 .......................................................................caccggguguacaucagcuaa................... 0 +seq_377455_x2 .......................................................................caccgggGguacaucagcuaa................... 1 +seq_378316_x1 .......................................................................caccggguguacaucaCcuaa................... 1 +seq_377467_x2 .......................................................................caccggguguacaucagcuaag.................. 0 +seq_374065_x18 .......................................................................caccggguguacaucagcuaaU.................. 1 +seq_377535_x2 .......................................................................caccggguguacaucagcuaaC.................. 1 +seq_373747_x19 .......................................................................caccggguguacaucagcuaaA.................. 1 +seq_377585_x2 ........................................................................accggguguacaucagcu..................... 0 +seq_376955_x4 ........................................................................accggguguacaucagcua.................... 0 +seq_378020_x1 ........................................................................accgggugCacaucagcuaa................... 1 +seq_378224_x1 ........................................................................acAggguguacaucagcuaa................... 1 +seq_377860_x1 ........................................................................accggguguaUaucagcuaa................... 1 +seq_377220_x3 ........................................................................accggguguacaucagGuaa................... 1 +seq_377745_x1 ........................................................................Uccggguguacaucagcuaa................... 1 +seq_377887_x1 ........................................................................accgUguguacaucagcuaa................... 1 +seq_378139_x1 ........................................................................accggguguacaucagcCaa................... 1 +seq_378244_x1 ........................................................................accgCguguacaucagcuaa................... 1 +seq_377939_x1 ........................................................................accggguAuacaucagcuaa................... 1 +seq_377569_x2 ........................................................................accggguguacaucUgcuaa................... 1 +seq_375275_x11 ........................................................................accgggCguacaucagcuaa................... 1 +seq_378306_x1 ........................................................................acGggguguacaucagcuaa................... 1 +seq_377280_x3 ........................................................................accggguguacauAagcuaa................... 1 +seq_351776_x240 ........................................................................accggguguacaucagcuaa................... 0 +seq_378004_x1 ........................................................................accggguguacaucaUcuaa................... 1 +seq_378267_x1 ........................................................................accggguguacaucagcuaC................... 1 +seq_377157_x3 ........................................................................accggguguacaucagAuaa................... 1 +seq_376633_x5 ........................................................................accggguguacaucCgcuaa................... 1 +seq_376767_x4 ........................................................................accCgguguacaucagcuaa................... 1 +seq_378206_x1 ........................................................................accggguguacaGcagcuaa................... 1 +seq_377499_x2 ........................................................................accggguguacaucaCcuaa................... 1 +seq_377607_x2 ........................................................................accggguguacaucagcuCa................... 1 +seq_377469_x2 ........................................................................aGcggguguacaucagcuaa................... 1 +seq_377623_x2 ........................................................................accggguguacaucagcuaU................... 1 +seq_376503_x6 ........................................................................accgggugGacaucagcuaa................... 1 +seq_377579_x2 ........................................................................accgggAguacaucagcuaa................... 1 +seq_377347_x2 ........................................................................aAcggguguacaucagcuaa................... 1 +seq_377905_x1 ........................................................................Nccggguguacaucagcuaa................... 1 +seq_376618_x5 ........................................................................accgggGguacaucagcuaa................... 1 +seq_377367_x2 ........................................................................accggguguacCucagcuaa................... 1 +seq_377310_x3 ........................................................................accggguguacaNcagcuaa................... 1 +seq_376759_x4 ........................................................................accggguguacaucagcuaaA.................. 1 +seq_377869_x1 ........................................................................accggguguacaucagcuaaU.................. 1 +seq_378311_x1 .........................................................................ccggguguacaucagcua.................... 0 +seq_378258_x1 .........................................................................cAggguguacaucagcuaa................... 1 +seq_377659_x2 .........................................................................ccggguguacaucagcuaa................... 0 + + + +>chrII:11534525-11540624_9 +score total 7482.8 +score for star read(s) 3.9 +score for read counts 7472.1 +score for mfe 2.2 +score for randfold 1.6 +score for cons. seed 3 +miRNA with same seed cbr-miR-35 +total read count 14668 +mature read count 14617 +loop read count 0 +star read count 51 +exp fffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSSllllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMfffffffffffffffffff +obs fffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSSllllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMfffffffffffffffffff +pri_seq ccacuugcuccaccgcugucggggaaccgcgccaauuuucgcuucagugcuagaccauccaaagugucuaucaccgggugaaaauucgcauggguccccgacgcggaaaga +pri_struct ............((((.((((((((.(((.((.(((((((((((..(((.((((((.......).))))).))).))))))))))).)).))).))))))))))))..... #MM +seq_377936_x1 .............................cgccaauuuucgcuucagCgc............................................................. 1 +seq_377645_x2 .............................cgccaauuuucgcuucagugcu............................................................ 0 +seq_377966_x1 .............................cgccaauuuucgcuucaguUcu............................................................ 1 +seq_378302_x1 .............................cgAcaauuuucgcuucagugcua........................................................... 1 +seq_371297_x37 .............................cgccaauuuucgcuucagugcua........................................................... 0 +seq_378170_x1 .............................cgccaauuuucgcuucagCgcua........................................................... 1 +seq_378042_x1 .............................cgccaauuuucgcuucagGgcua........................................................... 1 +seq_377163_x3 .............................cgccaauuuucgcuucaUugcua........................................................... 1 +seq_377387_x2 .............................cgccaauuuucgcuucagugcuaU.......................................................... 1 +seq_378257_x1 ..............................gccaauuuucgcuucaAugcua........................................................... 1 +seq_378254_x1 ..............................gccaCuuuucgcuucagugcua........................................................... 1 +seq_378197_x1 ...................................................................cuaucaccgggCgaaaauucgca..................... 1 +seq_373804_x19 ....................................................................Aaucaccgggugaaaauucgcaug................... 1 +seq_378229_x1 ....................................................................uCucaccgggugaaaauucgcaug................... 1 +seq_378144_x1 .....................................................................aucaAcgggugaaaauucgcaug................... 1 +seq_375076_x12 .....................................................................aucaccgggugaaaauucgcaug................... 0 +seq_375525_x10 .....................................................................Cucaccgggugaaaauucgcaug................... 1 +seq_378009_x1 .....................................................................Uucaccgggugaaaauucgcaug................... 1 +seq_377761_x1 ......................................................................ucaccgggugaaaauucgc...................... 0 +seq_377369_x2 ......................................................................ucacAgggugaaaauucgca..................... 1 +seq_377937_x1 ......................................................................ucaccgggugaaaauuAgca..................... 1 +seq_372815_x25 ......................................................................ucaccgggugaaaauucgca..................... 0 +seq_378192_x1 ......................................................................ucaccgggCgaaaauucgca..................... 1 +seq_378019_x1 ......................................................................ucaccgggugUaaauucgca..................... 1 +seq_377785_x1 ......................................................................ucaccgggugaUaauucgca..................... 1 +seq_377409_x2 ......................................................................ucaccgggGgaaaauucgca..................... 1 +seq_377790_x1 ......................................................................ucaccgggugaaaauucgUa..................... 1 +seq_378098_x1 ......................................................................ucaccgggugaaaauucUcau.................... 1 +seq_377907_x1 ......................................................................ucaccgggugaaaauucgcCu.................... 1 +seq_352482_x229 ......................................................................ucaccgggugaaaauucgcau.................... 0 +seq_377756_x1 ......................................................................ucaccgUgugaaaauucgcau.................... 1 +seq_376515_x6 ......................................................................ucacAgggugaaaauucgcau.................... 1 +seq_377952_x1 ......................................................................ucaccgggugUaaauucgcau.................... 1 +seq_377985_x1 ......................................................................ucacUgggugaaaauucgcau.................... 1 +seq_377691_x2 ......................................................................ucaccggguUaaaauucgcau.................... 1 +seq_377934_x1 ......................................................................ucaccgggugaaaauucAcau.................... 1 +seq_377124_x3 ......................................................................ucaccgggGgaaaauucgcau.................... 1 +seq_378069_x1 ......................................................................uGaccgggugaaaauucgcau.................... 1 +seq_378028_x1 ......................................................................ucaccgCgugaaaauucgcau.................... 1 +seq_376323_x6 ......................................................................ucaccgggugaaaauuAgcau.................... 1 +seq_378269_x1 ......................................................................ucaccgggugaaGauucgcau.................... 1 +seq_377993_x1 ......................................................................ucaccgggugaaaauucgcaG.................... 1 +seq_378033_x1 ......................................................................ucaAcgggugaaaauucgcau.................... 1 +seq_378271_x1 ......................................................................uAaccgggugaaaauucgcau.................... 1 +seq_377121_x3 ......................................................................ucaccgggugaaNauucgcau.................... 1 +seq_377497_x2 ......................................................................ucaccgggugaaaauuGgcau.................... 1 +seq_373728_x19 ......................................................................ucaccgggugaCaauucgcaug................... 1 +seq_360225_x157 ......................................................................ucaccgggCgaaaauucgcaug................... 1 +seq_373268_x22 ......................................................................ucaccgggugaaaauucgcauC................... 1 +seq_377271_x3 ......................................................................ucaccgggugaaaauucgGaug................... 1 +seq_374343_x16 ......................................................................Gcaccgggugaaaauucgcaug................... 1 +seq_373506_x21 ......................................................................ucaccAggugaaaauucgcaug................... 1 +seq_372204_x30 ......................................................................ucaccgggugaaCauucgcaug................... 1 +seq_347181_x298 ......................................................................ucacAgggugaaaauucgcaug................... 1 +seq_361731_x143 ......................................................................ucaccgggAgaaaauucgcaug................... 1 +seq_375874_x9 ......................................................................ucaccgggugaaaauucgcaCg................... 1 +seq_378088_x1 ......................................................................ucaccgggugaaaauucNcaug................... 1 +seq_373588_x20 ......................................................................ucaccgggugaaaauucgcUug................... 1 +seq_377851_x1 ......................................................................Ncaccgggugaaaauucgcaug................... 1 +seq_373548_x20 ......................................................................ucaccggCugaaaauucgcaug................... 1 +seq_370128_x47 ......................................................................ucaccgggugCaaauucgcaug................... 1 +seq_374119_x18 ......................................................................ucaccgggugaaaauucgUaug................... 1 +seq_373060_x24 ......................................................................ucaccgAgugaaaauucgcaug................... 1 +seq_373443_x21 ......................................................................ucaGcgggugaaaauucgcaug................... 1 +seq_374627_x15 ......................................................................ucaccggguAaaaauucgcaug................... 1 +seq_374973_x13 ......................................................................ucaccgggugaUaauucgcaug................... 1 +seq_373400_x22 ......................................................................ucaccgggugaaaauucgcCug................... 1 +seq_372577_x27 ......................................................................ucaccgggugaaaauucAcaug................... 1 +seq_375505_x10 ......................................................................uNaccgggugaaaauucgcaug................... 1 +seq_368739_x66 ......................................................................ucaccgggugaaaauucUcaug................... 1 +seq_376703_x5 ......................................................................ucaccgggugaaUauucgcaug................... 1 +seq_345948_x316 ......................................................................ucaccgggugaaaauucgcauU................... 1 +seq_373290_x22 ......................................................................ucaccgggugaaaauuNgcaug................... 1 +seq_376062_x8 ......................................................................ucacGgggugaaaauucgcaug................... 1 +seq_376353_x6 ......................................................................ucGccgggugaaaauucgcaug................... 1 +seq_371653_x34 ......................................................................ucaccgggugaaaauucgcauA................... 1 +seq_375748_x9 ......................................................................Ccaccgggugaaaauucgcaug................... 1 +seq_373628_x20 ......................................................................ucaccUggugaaaauucgcaug................... 1 +seq_377581_x2 ......................................................................ucaccgggugaaaGuucgcaug................... 1 +seq_351036_x251 ......................................................................ucaccgggGgaaaauucgcaug................... 1 +seq_376110_x8 ......................................................................ucaccgggugaaaauGcgcaug................... 1 +seq_376218_x7 ......................................................................Acaccgggugaaaauucgcaug................... 1 +seq_377357_x2 ......................................................................ucaNcgggugaaaauucgcaug................... 1 +seq_375136_x12 ......................................................................ucaccgggugaaaauCcgcaug................... 1 +seq_366148_x95 ......................................................................ucaccgggugaaaauuAgcaug................... 1 +seq_374895_x13 ......................................................................ucaccgggugaaaauucCcaug................... 1 +seq_374701_x14 ......................................................................ucaccgggugaaaauuGgcaug................... 1 +seq_375475_x10 ......................................................................ucCccgggugaaaauucgcaug................... 1 +seq_371985_x32 ......................................................................ucaccgggugGaaauucgcaug................... 1 +seq_372353_x29 ......................................................................uUaccgggugaaaauucgcaug................... 1 +seq_368673_x66 ......................................................................ucaccgCgugaaaauucgcaug................... 1 +seq_372382_x29 ......................................................................ucacUgggugaaaauucgcaug................... 1 +seq_373785_x19 ......................................................................ucaccggAugaaaauucgcaug................... 1 +seq_266019_x11571......................................................................ucaccgggugaaaauucgcaug................... 0 +seq_372234_x30 ......................................................................ucaccgggugaaaauuUgcaug................... 1 +seq_373842_x19 ......................................................................ucaccgggugaaaauucgAaug................... 1 +seq_375655_x10 ......................................................................ucaccgggugaaaCuucgcaug................... 1 +seq_375998_x8 ......................................................................ucaccgggugaaaauucgcGug................... 1 +seq_376281_x6 ......................................................................ucaccgggugaaaauucgcaAg................... 1 +seq_375208_x12 ......................................................................ucaccggguCaaaauucgcaug................... 1 +seq_376141_x7 ......................................................................ucaccgggugaaaauAcgcaug................... 1 +seq_375645_x10 ......................................................................ucaccCggugaaaauucgcaug................... 1 +seq_372865_x25 ......................................................................ucaccgggugUaaauucgcaug................... 1 +seq_367656_x78 ......................................................................ucaccgggugaaNauucgcaug................... 1 +seq_375064_x12 ......................................................................ucaccgggugaGaauucgcaug................... 1 +seq_375605_x10 ......................................................................ucaccgggugaaaaGucgcaug................... 1 +seq_374391_x16 ......................................................................ucaUcgggugaaaauucgcaug................... 1 +seq_378049_x1 ......................................................................ucaccggNugaaaauucgcaug................... 1 +seq_375297_x11 ......................................................................ucaccgggugaaaaCucgcaug................... 1 +seq_375425_x10 ......................................................................ucaccgggugaaaaAucgcaug................... 1 +seq_372685_x26 ......................................................................uAaccgggugaaaauucgcaug................... 1 +seq_369431_x59 ......................................................................ucaAcgggugaaaauucgcaug................... 1 +seq_375051_x13 ......................................................................ucaccggguUaaaauucgcaug................... 1 +seq_375495_x10 ......................................................................ucaccggUugaaaauucgcaug................... 1 +seq_374551_x16 ......................................................................ucaccgggugaaGauucgcaug................... 1 +seq_374687_x14 ......................................................................uGaccgggugaaaauucgcaug................... 1 +seq_377349_x2 ......................................................................ucaccgggNgaaaauucgcaug................... 1 +seq_374799_x14 ......................................................................ucaccgggugaaaauucgNaug................... 1 +seq_371444_x36 ......................................................................ucaccgggugaaaauucgcaGg................... 1 +seq_375712_x9 ......................................................................ucaccgUgugaaaauucgcaug................... 1 +cel-miR-36 ......................................................................ucaccgggugaaaauucgcaug................... 0 +seq_374258_x17 ......................................................................ucaccgggugaaaUuucgcaug................... 1 +seq_378058_x1 ......................................................................ucaccgggugaaaauucgcaGgg.................. 1 +seq_375635_x10 ......................................................................ucaccgggugaaaauucgcaugA.................. 1 +seq_377329_x2 ......................................................................ucaccgggugaaaauucgcaugC.................. 1 +seq_371408_x36 ......................................................................ucaccgggugaaaauucgcaugU.................. 1 +seq_378065_x1 ......................................................................ucaccgggugaaaauucgcauggC................. 1 +seq_377890_x1 .......................................................................caccgggugaaaCuucgcaug................... 1 +seq_377471_x2 .......................................................................caccgggGgaaaauucgcaug................... 1 +seq_377827_x1 .......................................................................cacUgggugaaaauucgcaug................... 1 +seq_377073_x3 .......................................................................caccgggugaaaauucgcaug................... 0 +seq_378145_x1 ........................................................................accgggugaaaauucgca..................... 0 +seq_377103_x3 ........................................................................accgggugaaaauucgcau.................... 0 +seq_378119_x1 ........................................................................accgggugaaaauucgcaCg................... 1 +seq_378255_x1 ........................................................................accggAugaaaauucgcaug................... 1 +seq_377693_x2 ........................................................................accgggugaaaauucUcaug................... 1 +seq_377743_x2 ........................................................................accCggugaaaauucgcaug................... 1 +seq_378045_x1 ........................................................................accgggugaaaaAucgcaug................... 1 +seq_377351_x2 ........................................................................accggguCaaaauucgcaug................... 1 +seq_377791_x1 ........................................................................accgggugaaaauucgcauC................... 1 +seq_378159_x1 ........................................................................acUgggugaaaauucgcaug................... 1 +seq_365235_x104 ........................................................................accgggugaaaauucgcaug................... 0 +seq_377765_x1 ........................................................................accgggugaaaauucCcaug................... 1 +seq_377365_x2 ........................................................................accgggugaaaauuAgcaug................... 1 +seq_378121_x1 ........................................................................accgggCgaaaauucgcaug................... 1 +seq_377641_x2 ........................................................................accgggugaaaauGcgcaug................... 1 +seq_378264_x1 ........................................................................accgAgugaaaauucgcaug................... 1 +seq_378094_x1 ........................................................................accgggAgaaaauucgcaug................... 1 +seq_377669_x2 ........................................................................accgggugaaaauucgcauU................... 1 +seq_376819_x4 ........................................................................accgggGgaaaauucgcaug................... 1 +seq_377755_x1 ..........................................................................cgggugaaaauucgcaug................... 0 + + + +>chrII:11534525-11540624_15 +score total 1978.6 +score for star read(s) 3.9 +score for read counts 1968.1 +score for mfe 2 +score for randfold 1.6 +score for cons. seed 3 +miRNA with same seed cbr-miR-35 +total read count 3872 +mature read count 3014 +loop read count 1 +star read count 857 +exp ffffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSllllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMffffffffffffffffff +obs ffffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSllllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMffffffffffffffffff +pri_seq auuauugaauuccugauauaccgagagcccagcugauuucgucuugguaauaagcucgucauugagauuaucaccggguguaaaucagcuuggcucuggugucuccgaac +pri_struct .........(((..((.(((((.((((((.(((((((((((.((((((.((((.((((....)))).)))).)))))))).))))))))).))))))))))).)).))). #MM +seq_377766_x1 .............................cagcugauuucgucuugguaau........................................................... 0 +seq_377852_x1 .............................Aagcugauuucgucuugguaau........................................................... 1 +seq_376455_x6 .............................cagcugauuucgucuugguaaua.......................................................... 0 +seq_376102_x8 ..............................agcugauuucgucuuggua............................................................. 0 +seq_377932_x1 ..............................agcugCuuucgucuugguaa............................................................ 1 +seq_377781_x1 ..............................agcugauuucgucuugUuaa............................................................ 1 +seq_377876_x1 ..............................agcugUuuucgucuugguaa............................................................ 1 +seq_374292_x17 ..............................agcugauuucgucuugguaa............................................................ 0 +seq_377750_x1 ..............................agcugauuucgucuugguCa............................................................ 1 +seq_377792_x1 ..............................agAugauuucgucuugguaau........................................................... 1 +seq_377145_x3 ..............................Ugcugauuucgucuugguaau........................................................... 1 +seq_370030_x50 ..............................agcugauuucgucuugguaau........................................................... 0 +seq_378023_x1 ..............................agcugauuucgucuugguUau........................................................... 1 +seq_377863_x1 ..............................agcugauuAcgucuugguaau........................................................... 1 +seq_377940_x1 ..............................agcugauuucgucuugAuaau........................................................... 1 +seq_377894_x1 ..............................agcugauuucguAuugguaau........................................................... 1 +seq_377493_x2 ..............................aCcugauuucgucuugguaaua.......................................................... 1 +seq_377061_x3 ..............................agcugauuucgucuuggAaaua.......................................................... 1 +seq_377856_x1 ..............................agcugauuucgCcuugguaaua.......................................................... 1 +seq_378117_x1 ..............................agcugauuucgAcuugguaaua.......................................................... 1 +seq_376371_x6 ..............................agcugauuucgucuuUguaaua.......................................................... 1 +seq_377070_x3 ..............................agcugauuuAgucuugguaaua.......................................................... 1 +seq_375950_x8 ..............................agAugauuucgucuugguaaua.......................................................... 1 +seq_376148_x7 ..............................agcugUuuucgucuugguaaua.......................................................... 1 +seq_376533_x5 ..............................Ugcugauuucgucuugguaaua.......................................................... 1 +seq_377313_x3 ..............................agcugauuuUgucuugguaaua.......................................................... 1 +seq_378077_x1 ..............................agcugaCuucgucuugguaaua.......................................................... 1 +seq_378084_x1 ..............................aAcugauuucgucuugguaaua.......................................................... 1 +seq_377902_x1 ..............................agcugauuucguGuugguaaua.......................................................... 1 +seq_377151_x3 ..............................agcuAauuucgucuugguaaua.......................................................... 1 +seq_378275_x1 ..............................agcCgauuucgucuugguaaua.......................................................... 1 +seq_378290_x1 ..............................agcugauuucgucuugguaGua.......................................................... 1 +seq_377663_x2 ..............................agcugGuuucgucuugguaaua.......................................................... 1 +seq_377166_x3 ..............................agcugauuucgucuugguaUua.......................................................... 1 +seq_378017_x1 ..............................agcugCuuucgucuugguaaua.......................................................... 1 +seq_376979_x4 ..............................agUugauuucgucuugguaaua.......................................................... 1 +seq_376907_x4 ..............................agcugauuucgucuugguaauU.......................................................... 1 +seq_377363_x2 ..............................agcugaGuucgucuugguaaua.......................................................... 1 +seq_377031_x3 ..............................agcugauuucgucuugguaauC.......................................................... 1 +seq_377525_x2 ..............................agcugauuucguAuugguaaua.......................................................... 1 +seq_377085_x3 ..............................agcugauuucgGcuugguaaua.......................................................... 1 +seq_376739_x4 ..............................agcugauuucgucuuggCaaua.......................................................... 1 +seq_377274_x3 ..............................agcugauuucguUuugguaaua.......................................................... 1 +seq_377389_x2 ..............................agcugauuucgucuuCguaaua.......................................................... 1 +seq_376578_x5 ..............................agcugauuucgucuuggGaaua.......................................................... 1 +seq_377665_x2 ..............................agcugauuucgucuugguCaua.......................................................... 1 +seq_378137_x1 ..............................agcugauuucAucuugguaaua.......................................................... 1 +seq_337222_x632 ..............................agcugauuucgucuugguaaua.......................................................... 0 +seq_377205_x3 ..............................agcugauuucgucuugCuaaua.......................................................... 1 +seq_378202_x1 ..............................agcugauuucUucuugguaaua.......................................................... 1 +seq_375455_x10 ..............................agcugauuucgucuugUuaaua.......................................................... 1 +seq_373956_x19 ..............................agcugauuucgucuugguaauaU......................................................... 1 +seq_376317_x6 ..............................agcugauuucgucuugguaauaa......................................................... 0 +seq_377935_x1 ..............................agcugauuucguGuugguaauaa......................................................... 1 +seq_377919_x1 ..............................agcuAauuucgucuugguaauaa......................................................... 1 +seq_378228_x1 ..............................agcugauuucgucuugguaauaC......................................................... 1 +seq_378031_x1 ....................................................agcucgucauugagauua........................................ 0 +seq_377831_x1 ....................................................................uGucaccggguguaaaucagcu.................... 1 +seq_377319_x3 ....................................................................Aaucaccggguguaaaucagcuug.................. 1 +seq_377509_x2 .....................................................................Cucaccggguguaaaucagcuu................... 1 +seq_378082_x1 .....................................................................Cucaccggguguaaaucagcuug.................. 1 +seq_377100_x3 .....................................................................aucaccggguguaaaucagcuug.................. 0 +seq_376693_x5 ......................................................................ucaccggguguaaaucag...................... 0 +seq_377359_x2 ......................................................................ucaccgggGguaaaucagc..................... 1 +seq_375286_x11 ......................................................................ucaccggguguaaaucagc..................... 0 +seq_377929_x1 ......................................................................ucaccggguguaaauAagc..................... 1 +seq_378332_x1 ......................................................................ucaccggguguaaaucaUc..................... 1 +seq_378328_x1 ......................................................................ucaGcggguguaaaucagc..................... 1 +seq_377979_x1 ......................................................................ucaccggguguaNaucagc..................... 1 +seq_377361_x2 ......................................................................ucacAggguguaaaucagcu.................... 1 +seq_373312_x22 ......................................................................ucaccggguguaaaucagcu.................... 0 +seq_378183_x1 ......................................................................ucaccggguguaNaucagcu.................... 1 +seq_378120_x1 ......................................................................ucaccggguguaaaucagcG.................... 1 +seq_377981_x1 ......................................................................ucaccggguguaUaucagcu.................... 1 +seq_378256_x1 ......................................................................ucaccggguguaaaucaAcu.................... 1 +seq_377995_x1 ......................................................................Gcaccggguguaaaucagcuu................... 1 +seq_378260_x1 ......................................................................ucaccggguguaaauUagcuu................... 1 +seq_378301_x1 ......................................................................ucaccgggCguaaaucagcuu................... 1 +seq_378061_x1 ......................................................................uGaccggguguaaaucagcuu................... 1 +seq_377812_x1 ......................................................................ucaccggguguaaaAcagcuu................... 1 +seq_377776_x1 ......................................................................ucaccgCguguaaaucagcuu................... 1 +seq_377244_x3 ......................................................................ucaccggguguaaaucagcuA................... 1 +seq_366974_x88 ......................................................................ucaccggguguaaaucagcuu................... 0 +seq_377841_x1 ......................................................................ucaccgggugCaaaucagcuu................... 1 +seq_378297_x1 ......................................................................ucaccgggAguaaaucagcuu................... 1 +seq_377914_x1 ......................................................................ucaccggguguaaaucagcCu................... 1 +seq_376558_x5 ......................................................................ucaccggguguaCaucagcuu................... 1 +seq_377989_x1 ......................................................................ucaccggguguaaaCcagcuu................... 1 +seq_376743_x4 ......................................................................ucacAggguguaaaucagcuu................... 1 +seq_377778_x1 ......................................................................ucaccggguguaaaucGgcuu................... 1 +seq_377753_x1 ......................................................................ucaccggguguaaaucaUcuu................... 1 +seq_376648_x5 ......................................................................ucaccggguguaaaucGgcuug.................. 1 +seq_377707_x2 ......................................................................ucaccggguguaGaucagcuug.................. 1 +seq_377978_x1 ......................................................................ucaccCgguguaaaucagcuug.................. 1 +cel-miR-39 ......................................................................ucaccggguguaaaucagcuug.................. 0 +seq_378262_x1 ......................................................................ucaccggguguaUaucagcuug.................. 1 +seq_376628_x5 ......................................................................ucaccggguguaaaucagAuug.................. 1 +seq_377259_x3 ......................................................................ucaccggguguaaaucUgcuug.................. 1 +seq_377503_x2 ......................................................................ucaccggguAuaaaucagcuug.................. 1 +seq_374309_x17 ......................................................................ucaccgggCguaaaucagcuug.................. 1 +seq_377495_x2 ......................................................................ucaccggguguCaaucagcuug.................. 1 +seq_376118_x8 ......................................................................ucaccggguguaaaucaCcuug.................. 1 +seq_374326_x17 ......................................................................ucaccggguguaaauUagcuug.................. 1 +seq_376771_x4 ......................................................................ucaUcggguguaaaucagcuug.................. 1 +seq_376509_x6 ......................................................................ucaccggUuguaaaucagcuug.................. 1 +seq_377631_x2 ......................................................................ucCccggguguaaaucagcuug.................. 1 +seq_374642_x15 ......................................................................ucaccggguguaaauAagcuug.................. 1 +seq_377433_x2 ......................................................................uGaccggguguaaaucagcuug.................. 1 +seq_373880_x19 ......................................................................ucaccgggAguaaaucagcuug.................. 1 +seq_375942_x8 ......................................................................ucaccgCguguaaaucagcuug.................. 1 +seq_374855_x14 ......................................................................ucaccgggugGaaaucagcuug.................. 1 +seq_377094_x3 ......................................................................uNaccggguguaaaucagcuug.................. 1 +seq_373766_x19 ......................................................................ucaccgggugCaaaucagcuug.................. 1 +seq_378234_x1 ......................................................................ucaccggguUuaaaucagcuug.................. 1 +seq_376437_x6 ......................................................................ucaccggguguaaaucagcuGg.................. 1 +seq_376995_x4 ......................................................................ucaccgAguguaaaucagcuug.................. 1 +seq_377591_x2 ......................................................................ucaccggguCuaaaucagcuug.................. 1 +seq_377217_x3 ......................................................................ucaccgggugAaaaucagcuug.................. 1 +seq_377395_x2 ......................................................................ucaccggguguGaaucagcuug.................. 1 +seq_377545_x2 ......................................................................ucaccggguguaaaucNgcuug.................. 1 +seq_376899_x4 ......................................................................ucaccggguguaaaCcagcuug.................. 1 +seq_378172_x1 ......................................................................ucaccggNuguaaaucagcuug.................. 1 +seq_354255_x214 ......................................................................ucaccggguguaaaucagcuuU.................. 1 +seq_377808_x1 ......................................................................ucaccggguguaaaucagGuug.................. 1 +seq_376311_x6 ......................................................................ucaccggguguaCaucagcuug.................. 1 +seq_377741_x2 ......................................................................ucaccggguguaaaucagUuug.................. 1 +seq_375445_x10 ......................................................................ucaccggguguaNaucagcuug.................. 1 +seq_378186_x1 ......................................................................ucaNcggguguaaaucagcuug.................. 1 +seq_377920_x1 ......................................................................ucaccggguguaaaucagcuAg.................. 1 +seq_375918_x8 ......................................................................uUaccggguguaaaucagcuug.................. 1 +seq_375555_x10 ......................................................................ucaccggguguaaaucaUcuug.................. 1 +seq_377345_x2 ......................................................................ucaccggguguaaCucagcuug.................. 1 +seq_376548_x5 ......................................................................ucaccggguguaaaGcagcuug.................. 1 +seq_374597_x15 ......................................................................ucaccggguguaaaucagcuuC.................. 1 +seq_376891_x4 ......................................................................ucaccggguguaaaucagcGug.................. 1 +seq_311369_x2128......................................................................ucaccggguguaaaucagcuug.................. 0 +seq_378047_x1 ......................................................................ucaccggguguaaauGagcuug.................. 1 +seq_375757_x9 ......................................................................ucaccggguguaaaucCgcuug.................. 1 +seq_376377_x6 ......................................................................ucaccUgguguaaaucagcuug.................. 1 +seq_376779_x4 ......................................................................ucaccAgguguaaaucagcuug.................. 1 +seq_377199_x3 ......................................................................ucaccgUguguaaaucagcuug.................. 1 +seq_376022_x8 ......................................................................ucaAcggguguaaaucagcuug.................. 1 +seq_372142_x31 ......................................................................ucacAggguguaaaucagcuug.................. 1 +seq_378127_x1 ......................................................................ucaccggguguaaaucagcCug.................. 1 +seq_377375_x2 ......................................................................ucaccggguguaaaucaAcuug.................. 1 +seq_377727_x2 ......................................................................ucaccggCuguaaaucagcuug.................. 1 +seq_378248_x1 ......................................................................uAaccggguguaaaucagcuug.................. 1 +seq_377573_x2 ......................................................................ucaGcggguguaaaucagcuug.................. 1 +seq_378181_x1 ......................................................................Acaccggguguaaaucagcuug.................. 1 +seq_376815_x4 ......................................................................ucaccggguguaaUucagcuug.................. 1 +seq_377238_x3 ......................................................................ucacUggguguaaaucagcuug.................. 1 +seq_375847_x9 ......................................................................Gcaccggguguaaaucagcuug.................. 1 +seq_377483_x2 ......................................................................ucaccggguguaaGucagcuug.................. 1 +seq_377697_x2 ......................................................................ucaccggAuguaaaucagcuug.................. 1 +seq_377880_x1 ......................................................................ucaccggguguUaaucagcuug.................. 1 +seq_372658_x27 ......................................................................ucaccgggGguaaaucagcuug.................. 1 +seq_371821_x33 ......................................................................ucaccggguguaaaucagcuuA.................. 1 +seq_377399_x2 ......................................................................ucaccggguguaaaucagcAug.................. 1 +seq_376991_x4 ......................................................................ucaccggguguaaaucagcuugC................. 1 +seq_376683_x5 ......................................................................ucaccggguguaaaucagcuugg................. 0 +seq_375196_x12 ......................................................................ucaccggguguaaaucagcuugA................. 1 +seq_372080_x31 ......................................................................ucaccggguguaaaucagcuugU................. 1 +seq_377849_x1 ......................................................................ucaccggguguaaaucagcuuggc................ 0 +seq_377884_x1 ......................................................................ucaccggguguaaaucagcuuggcG............... 1 +seq_377597_x2 .......................................................................caccggguguaaaucagcuug.................. 0 +seq_377825_x1 .......................................................................caccggguguaaaucagcuuU.................. 1 +seq_377621_x2 ........................................................................accggguguaaaucagcuuU.................. 1 +seq_378024_x1 ........................................................................aAcggguguaaaucagcuug.................. 1 +seq_377846_x1 ........................................................................accgggGguaaaucagcuug.................. 1 +seq_378292_x1 ........................................................................accgggCguaaaucagcuug.................. 1 +seq_377705_x2 ........................................................................accggguguaaaucagcuuA.................. 1 +seq_377873_x1 ........................................................................accggguguaaaucUgcuug.................. 1 +seq_371887_x33 ........................................................................accggguguaaaucagcuug.................. 0 +seq_378179_x1 ........................................................................accggguguaaaucagcuNg.................. 1 +seq_378219_x1 ........................................................................accggguguaaaucagcuugUc................ 1 +seq_377870_x1 .........................................................................ccggguguaaaucagcuuA.................. 1 + + + +>chrII:11534525-11540624_13 +score total 5.5 +score for star read(s) -1.3 +score for read counts 0 +score for mfe 2.2 +score for randfold 1.6 +score for cons. seed 3 +miRNA with same seed cbr-miR-35 +total read count 2140 +mature read count 2132 +loop read count 8 +star read count 0 +exp fffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSlllllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMfffffffffffffffffff +pri_seq ucgugguuucucugugagccagguccuguuccgguuuuuuccguggugauaacgcauccaaaagucucuaucaccgggagaaaaacuggaguaggaccugugacucauucc +pri_struct .............((((((((((((((((((((((((((..(.((((((((..((........))...)))))))).)..)))))))))))))))))))).).)))))... #MM +seq_378012_x1 .........cucugugaUccagguccugu.................................................................................. 1 +seq_376030_x8 ...................................................acgcauccaaaagucucua......................................... 0 +seq_377775_x1 .....................................................................aucaccgggagaaaaacuggag.................... 0 +seq_378130_x1 .....................................................................aucaccgggagUaaaacuggagu................... 1 +seq_375088_x12 .....................................................................aucaccgggagaaaaacuggagu................... 0 +seq_378001_x1 .....................................................................aucaccggCagaaaaacuggagu................... 1 +seq_376947_x4 .....................................................................Cucaccgggagaaaaacuggagu................... 1 +seq_378196_x1 .....................................................................aucaccgggagaaCaacuggagu................... 1 +seq_377529_x2 .....................................................................aucaccgggagaaaaacuggaguU.................. 1 +seq_377895_x1 .....................................................................aucaccgggagaaaaacuggaguaA................. 1 +seq_377879_x1 ......................................................................ucaccgggUgaaaaacug....................... 1 +seq_377877_x1 ......................................................................ucaccgggagaaaaacug....................... 0 +seq_376747_x4 ......................................................................ucaccgggagaaaaacugga..................... 0 +seq_377819_x1 ......................................................................ucaccgggagaaaaacuggaU.................... 1 +seq_377523_x2 ......................................................................ucaccggCagaaaaacuggag.................... 1 +seq_377211_x3 ......................................................................ucaccgggagGaaaacuggag.................... 1 +seq_378171_x1 ......................................................................ucaccgggagaaUaacuggag.................... 1 +seq_377815_x1 ......................................................................ucaccgggagaaaUacuggag.................... 1 +seq_377425_x2 ......................................................................ucacAgggagaaaaacuggag.................... 1 +seq_378277_x1 ......................................................................ucaccgggagaaaaaUuggag.................... 1 +seq_378014_x1 ......................................................................ucaccgggagaaaaaGuggag.................... 1 +seq_376859_x4 ......................................................................ucaccgggagaaaaacuggUg.................... 1 +seq_377517_x2 ......................................................................ucaccgggagCaaaacuggag.................... 1 +seq_378305_x1 ......................................................................ucaAcgggagaaaaacuggag.................... 1 +seq_377924_x1 ......................................................................ucaccgggagUaaaacuggag.................... 1 +seq_377603_x2 ......................................................................ucaccgggagaaaaacuggaC.................... 1 +seq_378208_x1 ......................................................................ucaccgggagaaaaacAggag.................... 1 +seq_377178_x3 ......................................................................ucaccgggagaaaaacugCag.................... 1 +seq_377886_x1 ......................................................................ucaccgggagaaCaacuggag.................... 1 +seq_361587_x144 ......................................................................ucaccgggagaaaaacuggag.................... 0 +seq_377571_x2 ......................................................................ucaccgggUgaaaaacuggag.................... 1 +seq_376054_x8 ......................................................................ucaccgggagGaaaacuggagu................... 1 +seq_377868_x1 ......................................................................ucaAcgggagaaaaacuggagu................... 1 +seq_377229_x3 ......................................................................ucaccggAagaaaaacuggagu................... 1 +seq_377551_x2 ......................................................................ucaccgggagaaNaacuggagu................... 1 +seq_377429_x2 ......................................................................ucaccggCagaaaaacuggagu................... 1 +seq_376678_x5 ......................................................................ucaccgggagaaaaacuCgagu................... 1 +seq_377798_x1 ......................................................................ucaccgggagaaaaaNuggagu................... 1 +seq_374083_x18 ......................................................................ucaccgggagaaaaacuggUgu................... 1 +seq_375485_x10 ......................................................................ucaccgggagCaaaacuggagu................... 1 +seq_377874_x1 ......................................................................ucaccgggaAaaaaacuggagu................... 1 +seq_376673_x5 ......................................................................uAaccgggagaaaaacuggagu................... 1 +seq_377465_x2 ......................................................................ucaccgggagaaaaacAggagu................... 1 +seq_376863_x4 ......................................................................ucaccgggagaaaaacugUagu................... 1 +seq_377214_x3 ......................................................................uNaccgggagaaaaacuggagu................... 1 +seq_377391_x2 ......................................................................ucaccgggagaaaaacuggCgu................... 1 +seq_320610_x1349......................................................................ucaccgggagaaaaacuggagu................... 0 +seq_378162_x1 ......................................................................ucaccgggGgaaaaacuggagu................... 1 +seq_377945_x1 ......................................................................ucaccgggagaCaaacuggagu................... 1 +seq_378308_x1 ......................................................................ucaUcgggagaaaaacuggagu................... 1 +seq_377725_x2 ......................................................................Ccaccgggagaaaaacuggagu................... 1 +seq_378032_x1 ......................................................................ucaccgggagaaaUacuggagu................... 1 +seq_376211_x7 ......................................................................ucaccgggUgaaaaacuggagu................... 1 +seq_377906_x1 ......................................................................ucaccgggagaaaaacuggaUu................... 1 +seq_378174_x1 ......................................................................ucaccgggagaaaaacuggGgu................... 1 +seq_377339_x2 ......................................................................ucaccgggCgaaaaacuggagu................... 1 +seq_374190_x17 ......................................................................ucaccgggagaaaaacuggagA................... 1 +seq_376999_x4 ......................................................................ucaGcgggagaaaaacuggagu................... 1 +seq_371854_x33 ......................................................................ucaccgggagaaaaacuggagC................... 1 +seq_377739_x2 ......................................................................ucaccgggagaGaaacuggagu................... 1 +seq_376963_x4 ......................................................................ucaccUggagaaaaacuggagu................... 1 +seq_377960_x1 ......................................................................ucaccgggagaaaCacuggagu................... 1 +seq_376718_x5 ......................................................................ucaccgggagaaaaacuggaCu................... 1 +seq_378215_x1 ......................................................................ucaccgggagaaaaacugNagu................... 1 +seq_377196_x3 ......................................................................ucacUgggagaaaaacuggagu................... 1 +seq_378253_x1 ......................................................................ucaccgggagaaaaaGuggagu................... 1 +seq_377481_x2 ......................................................................ucaccgggagaaaaCcuggagu................... 1 +seq_377655_x2 ......................................................................ucaccgggagaaaaacNggagu................... 1 +seq_377842_x1 ......................................................................ucaccgggagaaGaacuggagu................... 1 +seq_377733_x2 ......................................................................ucaccgggagaaCaacuggagu................... 1 +seq_376975_x4 ......................................................................ucaccgggagaaaaacuAgagu................... 1 +seq_375739_x9 ......................................................................ucaccgggagaaaaaAuggagu................... 1 +seq_378059_x1 ......................................................................ucaccgggagaUaaacuggagu................... 1 +seq_376875_x4 ......................................................................ucaccgggagaaaaacuUgagu................... 1 +seq_377567_x2 ......................................................................ucCccgggagaaaaacuggagu................... 1 +seq_377208_x3 ......................................................................ucaccgggagaaaaacugAagu................... 1 +seq_378085_x1 ......................................................................ucaccCggagaaaaacuggagu................... 1 +seq_377379_x2 ......................................................................ucaccgggagaaaGacuggagu................... 1 +seq_378242_x1 ......................................................................ucaccgggaUaaaaacuggagu................... 1 +seq_378086_x1 ......................................................................ucaccAggagaaaaacuggagu................... 1 +seq_378041_x1 ......................................................................ucaccgggagaaaaUcuggagu................... 1 +seq_377901_x1 ......................................................................uGaccgggagaaaaacuggagu................... 1 +seq_377719_x2 ......................................................................Gcaccgggagaaaaacuggagu................... 1 +seq_378268_x1 ......................................................................ucaccgggaCaaaaacuggagu................... 1 +seq_377453_x2 ......................................................................ucaccgAgagaaaaacuggagu................... 1 +seq_373334_x22 ......................................................................ucaccgggagaaaaacugCagu................... 1 +seq_375160_x12 ......................................................................ucaccgggagaaaaaUuggagu................... 1 +seq_373422_x21 ......................................................................ucacAgggagaaaaacuggagu................... 1 +seq_375112_x12 ......................................................................ucaccgggagaaaaacuggagG................... 1 +cel-miR-38 ......................................................................ucaccgggagaaaaacuggagu................... 0 +seq_376038_x8 ......................................................................ucaccgggagUaaaacuggagu................... 1 +seq_377701_x2 ......................................................................uUaccgggagaaaaacuggagu................... 1 +seq_376293_x6 ......................................................................ucaccgggagaaaaacGggagu................... 1 +seq_377106_x3 ......................................................................ucaccgCgagaaaaacuggagu................... 1 +seq_377695_x2 ......................................................................ucaccgggagaaaaacuggUgua.................. 1 +seq_377892_x1 ......................................................................ucaccgggagCaaaacuggagua.................. 1 +seq_378063_x1 ......................................................................ucaccgggagaaaaacuggagAa.................. 1 +seq_377013_x3 ......................................................................ucaccgggagaaaaacuggagCa.................. 1 +seq_378122_x1 ......................................................................uGaccgggagaaaaacuggagua.................. 1 +seq_378075_x1 ......................................................................ucaccgggagaaaaacuggaguG.................. 1 +seq_352252_x230 ......................................................................ucaccgggagaaaaacuggaguU.................. 1 +seq_373708_x20 ......................................................................ucaccgggagaaaaacuggagua.................. 0 +seq_374947_x13 ......................................................................ucaccgggagaaaaacuggaguaA................. 1 +seq_378157_x1 ......................................................................ucaccgggagaaaaacuggaguUg................. 1 +seq_377403_x2 .......................................................................caccgggagaaaaacuggagu................... 0 +seq_377136_x3 ........................................................................accgggagaaaaacuggag.................... 0 +seq_378022_x1 ........................................................................accgggagaaaaacuggagC................... 1 +seq_375395_x10 ........................................................................accgggagaaaaacuggagu................... 0 +seq_378209_x1 ........................................................................accgggagaaaaacuggagA................... 1 +seq_378318_x1 ........................................................................accgggagaaaaacugAagu................... 1 +seq_378282_x1 ........................................................................accgggagGaaaacuggagu................... 1 +seq_377867_x1 ........................................................................accgggagCaaaacuggagu................... 1 +seq_377972_x1 ........................................................................accgggagaaaaacGggagu................... 1 +seq_377673_x2 ........................................................................accgggagaaaaacuggaguU.................. 1 +seq_377872_x1 ..........................................................................cgggagaaaaacuggagu................... 0 +seq_378055_x1 ..........................................................................cgggagaaaaacuggaguU.................. 1 + + + +>chrII:11534525-11540624_19 +score total 84.4 +score for star read(s) 3.9 +score for read counts 77.6 +score for mfe 1.9 +score for randfold 1.6 +score for cons. seed -0.6 +total read count 164 +mature read count 68 +loop read count 9 +star read count 87 +exp ffffffffffffffffffffffffffMMMMMMMMMMMMMMMMMMMMMMMlllllllllllllllllllllSSSSSSSSSSSSSSSSSSSSSSffffffffffffffffffff +obs ffffffffffffffffffffffffffMMMMMMMMMMMMMMMMMMMMMMMlllllllllllllllllllllSSSSSSSSSSSSSSSSSSSSSSffffffffffffffffffff +pri_seq auuuuuaagugggucccagagaccuuggugguuuuucucugcagugauagauacuucuaacaacucgcuaucaccgggugaaaaaucaccuaggucuggagccuccugcucu +pri_struct .......((..((..(((..(((((.(((((((((((((((..(((((((.................))))))))))).))))))))))).))))))))..))..))..... #MM +seq_378151_x1 ..........................ggugguuuuucucuUcaguga................................................................. 1 +seq_377657_x2 ..........................ggugguuuuucucugcagugau................................................................ 0 +seq_378283_x1 ..........................ggGgguuuuucucugcagugaua............................................................... 1 +seq_377938_x1 ..........................ggugguuuuucucugUagugaua............................................................... 1 +seq_378266_x1 ..........................ggugguCuuucucugcagugaua............................................................... 1 +seq_376959_x4 ..........................ggugguuuuucucuUcagugaua............................................................... 1 +seq_377459_x2 ..........................ggugguuuuucucugcagugCua............................................................... 1 +seq_377463_x2 ..........................ggugguuuuuUucugcagugaua............................................................... 1 +seq_370580_x42 ..........................ggugguuuuucucugcagugaua............................................................... 0 +seq_378066_x1 ..........................ggugguuuuucucugcagCgaua............................................................... 1 +seq_378054_x1 ..........................ggugguuuuucucugcagugauU............................................................... 1 +seq_377637_x2 ..........................ggugguuuuucucugcCgugaua............................................................... 1 +seq_378131_x1 ..........................ggugguuuuucucugcagugauaU.............................................................. 1 +seq_378064_x1 ..........................ggugguuuuucucugcagugauag.............................................................. 0 +seq_378010_x1 ..........................ggugguuuuucuGugcagugauag.............................................................. 1 +seq_377371_x2 ..........................ggugguuuuucucugcagugauaAa............................................................. 1 +seq_377953_x1 ............................ugguuuuucucugcagugaua............................................................... 0 +seq_377801_x1 ............................ugguuuuucucugcagugUua............................................................... 1 +seq_377854_x1 ............................ugguuuuucucugcagugauaga............................................................. 0 +seq_375838_x9 .................................................gauacuucuaacaacucgcua.......................................... 0 +seq_377941_x1 ....................................................................uaucaccgggugaaaaaucaccu..................... 0 +seq_378320_x1 .....................................................................aucaccgggugaaaaaucacAu..................... 1 +seq_378280_x1 .....................................................................aucaccggguAaaaaaucaccu..................... 1 +seq_376006_x8 .....................................................................aucaccgggugaaaaaucaccu..................... 0 +seq_376879_x4 .....................................................................aucaccgggugaaaaaucaccuU.................... 1 +seq_375615_x10 .....................................................................aucaccgggugaaaaaucaccua.................... 0 +seq_378108_x1 .....................................................................aucaccgggGgaaaaaucaccua.................... 1 +seq_376851_x4 ......................................................................ucaccgggugaaaaaucaccu..................... 0 +seq_377803_x1 ......................................................................ucaccgggugaaCaaucaccua.................... 1 +seq_378243_x1 ......................................................................ucaccgggugaaaGaucaccua.................... 1 +seq_378091_x1 ......................................................................ucaccgAgugaaaaaucaccua.................... 1 +seq_377871_x1 ......................................................................ucaccgggugaaaaauAaccua.................... 1 +seq_377853_x1 ......................................................................uAaccgggugaaaaaucaccua.................... 1 +seq_378138_x1 ......................................................................ucaccgggugCaaaaucaccua.................... 1 +seq_378123_x1 ......................................................................uUaccgggugaaaaaucaccua.................... 1 +seq_377052_x3 ......................................................................ucaccgggGgaaaaaucaccua.................... 1 +cel-miR-41 ......................................................................ucaccgggugaaaaaucaccua.................... 0 +seq_378249_x1 ......................................................................ucaccgggugaaaaaucaUcua.................... 1 +seq_372631_x27 ......................................................................ucaccgggugaaaaaucaccua.................... 0 +seq_377820_x1 ......................................................................ucaccAggugaaaaaucaccua.................... 1 +seq_377247_x3 ......................................................................ucaccgggugaaaaaucaccuaU................... 1 +seq_377331_x2 ......................................................................ucaccgggugaaaaaucaccuaA................... 1 +seq_377731_x2 .......................................................................caccgggugaaaaaucaccua.................... 0 +seq_377439_x2 .......................................................................caccgggugaaaaaucaccuaU................... 1 +seq_377980_x1 ........................................................................accgggCgaaaaaucaccua.................... 1 +seq_376395_x6 ........................................................................accgggugaaaaaucaccua.................... 0 +seq_378083_x1 .........................................................................ccgggugaaaaaucaccua.................... 0 +seq_377991_x1 ..........................................................................cgggugaaaaaucaccua.................... 0 + + +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/precursors_ref_this_species.fa Mon Jan 26 09:56:49 2015 -0500 @@ -0,0 +1,14 @@ +>cel-mir-36 +CACCGCTGTCGGGGAACCGCGCCAATTTTCGCTTCAGTGCTAGACCATCCAAAGTGTCTATCACCGGGTGAAAATTCGCATGGGTCCCCGACGCGGA +>cel-mir-37 +TTCTAGAAACCCTTGGACCAGTGTGGGTGTCCGTTGCGGTGCTACATTCTCTAATCTGTATCACCGGGTGAACACTTGCAGTGGTCCTCGTGGTTTCT +>cel-mir-38 +TCTGTGAGCCAGGTCCTGTTCCGGTTTTTTCCGTGGTGATAACGCATCCAAAAGTCTCTATCACCGGGAGAAAAACTGGAGTAGGACCTGTGACTCAT +>cel-mir-39 +TATACCGAGAGCCCAGCTGATTTCGTCTTGGTAATAAGCTCGTCATTGAGATTATCACCGGGTGTAAATCAGCTTGGCTCTGGTGTC +>cel-mir-40 +TCCTGTCCGCACCTCAGTGGATGTATGCCATGATGATAAGATATCAGAAATCCTATCACCGGGTGTACATCAGCTAAGGTGCGGGTACAGGT +>cel-mir-41 +GGGTCCCAGAGACCTTGGTGGTTTTTCTCTGCAGTGATAGATACTTCTAACAACTCGCTATCACCGGGTGAAAAATCACCTAGGTCTGGAGCCTCCT +>cel-mir-229 +CGCCGGCAATGACACTGGTTATCTTTTCCATCGTGGAATGCCCCCCATTGATTTTTTCCCCTTTTCGGGGGGAAAAAATTGGAAACGAGAAAGGTATCGGGTGTCATAGCCGGCG
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/reads_collapsed.fa Mon Jan 26 09:56:49 2015 -0500 @@ -0,0 +1,3220 @@ +>seq_0_x149538 +TCACCGGGTGGAAACTAGCAGT +>seq_149538_x90904 +TCACCGGGTGAACACTTGCAGT +>seq_240442_x25577 +TCACCGGGTGTACATCAGCTAA +>seq_266019_x11571 +TCACCGGGTGAAAATTCGCATG +>seq_277590_x9943 +TCACCGGGTGGAAACTAGCAG +>seq_287533_x5429 +TCACCGGGTGGAAACTAGCAGTT +>seq_292962_x4000 +AATGACACTGGTTATCTTTTCCATCG +>seq_296962_x3796 +TCACCGGGTGAACACTTGCAG +>seq_300758_x2851 +TCACCGGGTGAACACTTGCAGTT +>seq_303609_x2808 +TCACCGGGGGGAAACTAGCAGT +>seq_306417_x2793 +TCACAGGGTGGAAACTAGCAGT +>seq_309210_x2159 +TCACCGGGTGGAAACTAGCAGTA +>seq_311369_x2128 +TCACCGGGTGTAAATCAGCTTG +>seq_313497_x2021 +TCACCGGGTGGAAACTAGCA +>seq_315518_x1866 +TCACCGGGCGGAAACTAGCAGT +>seq_317384_x1629 +TCACCGGGAGGAAACTAGCAGT +>seq_319013_x1597 +TCACAGGGTGAACACTTGCAGT +>seq_320610_x1349 +TCACCGGGAGAAAAACTGGAGT +>seq_321959_x1326 +TCACCGGGTGGAAAATAGCAGT +>seq_323285_x1320 +TCACCGGGGGAACACTTGCAGT +>seq_324605_x1295 +TCACCGGGTGGANACTAGCAGT +>seq_325900_x1251 +TCACCGGGTGAACACTTGCAGTA +>seq_327151_x1237 +TCACCGGGTGAACACTTGCA +>seq_328388_x1017 +TCACCGGGTGTACATCAGCTA +>seq_329405_x990 +ACCGGGTGGAAACTAGCAGT +>seq_330395_x911 +TCACCGGGTGAANACTTGCAGT +>seq_331306_x853 +TCACCGGGCGAACACTTGCAGT +>seq_332159_x841 +TCACCGGGAGAACACTTGCAGT +>seq_333000_x757 +TCACCGCGTGGAAACTAGCAGT +>seq_333757_x746 +ACCGGGTGAACACTTGCAGT +>seq_334503_x690 +TCACCGGGTGGAAACTAGCAGC +>seq_335193_x686 +TCACCGGGTGAAAACTTGCAGT +>seq_335879_x674 +TCACCGCGTGAACACTTGCAGT +>seq_336553_x669 +TCACCGGGTGGAAACTAGCAGA +>seq_337222_x632 +AGCTGATTTCGTCTTGGTAATA +>seq_337854_x604 +TCAACGGGTGGAAACTAGCAGT +>seq_338458_x598 +TCACCGGGTGGAAACTATCAGT +>seq_339056_x557 +TCACCGGGTGGAAACTAGCAGG +>seq_339613_x541 +TCACCGGGTGTACATCAGCTAAA +>seq_340154_x508 +TCACCGGGTGAACACTGGCAGT +>seq_340662_x508 +TCACCGGGTGGACACTAGCAGT +>seq_341170_x448 +TCACCGGGTGAACACTTTCAGT +>seq_341618_x427 +TCACCGGGTGAACAATTGCAGT +>seq_342045_x391 +TCACCGGGTGAACACTTGCCGT +>seq_342436_x389 +TCACCGGGTGGAAACTTGCAGT +>seq_342825_x384 +TCACAGGGTGTACATCAGCTAA +>seq_343209_x360 +TCACCGGGTGAAAACTAGCAGT +>seq_343569_x355 +TCACCGGGTGTACATCAGCTAAT +>seq_343924_x352 +TCACCGGGTGCAAACTAGCAGT +>seq_344276_x345 +TCACCGGGTGGAGACTAGCAGT +>seq_344621_x340 +TCAACGGGTGAACACTTGCAGT +>seq_344961_x338 +TCACCGGGTGTACATCAGCTAT +>seq_345299_x327 +TCACCGGGTGAACACTTGCTGT +>seq_345626_x322 +TCACCGGGTGGAAATTAGCAGT +>seq_345948_x316 +TCACCGGGTGAAAATTCGCATT +>seq_346264_x309 +TCACCGGGTGGAAACTAGCCGT +>seq_346573_x304 +TCACCGGGTGGTAACTAGCAGT +>seq_346877_x304 +TCACCGGGTGGAAACTAGCTGT +>seq_347181_x298 +TCACAGGGTGAAAATTCGCATG +>seq_347479_x287 +TCACCGGGGGTACATCAGCTAA +>seq_347766_x287 +TAACCGGGTGGAAACTAGCAGT +>seq_348053_x285 +CACCGGGTGAACACTTGCAGT +>seq_348338_x283 +TCACCGGGTGGAAACTAGTAGT +>seq_348621_x282 +TCACCGGGTGGAAACTCGCAGT +>seq_348903_x271 +TCACCGGGTGCACATCAGCTAA +>seq_349174_x270 +TCACCGGGTGAACACTTGCAGC +>seq_349444_x269 +TCACCTGGTGGAAACTAGCAGT +>seq_349713_x268 +TCACCGGGTGTANATCAGCTAA +>seq_349981_x265 +TCACCGGGTTGAAACTAGCAGT +>seq_350246_x264 +TCACCGGGTGGCAACTAGCAGT +>seq_350510_x263 +TCACCGGGTGGAAACTACCAGT +>seq_350773_x263 +TCACCGGGTGGAAACTAGAAGT +>seq_351036_x251 +TCACCGGGGGAAAATTCGCATG +>seq_351287_x247 +TCACCGGGTGGACATCAGCTAA +>seq_351534_x242 +TCACCGGGTGAACACTTGCAGG +>seq_351776_x240 +ACCGGGTGTACATCAGCTAA +>seq_352016_x236 +TCACCGGGTGGAAACTAGNAGT +>seq_352252_x230 +TCACCGGGAGAAAAACTGGAGTT +>seq_352482_x229 +TCACCGGGTGAAAATTCGCAT +>seq_352711_x226 +TCACCGGGTGAAGACTTGCAGT +>seq_352937_x224 +TCACCGGGCGTACATCAGCTAA +>seq_353161_x223 +TCACCGGGTGGAAACTNGCAGT +>seq_353384_x221 +CACCGGGTGAACACTTGCAGTT +>seq_353605_x219 +TCACCGGATGGAAACTAGCAGT +>seq_353824_x217 +TCACCGGGTGGAAACTAGCATT +>seq_354041_x214 +TAACCGGGTGAACACTTGCAGT +>seq_354255_x214 +TCACCGGGTGTAAATCAGCTTT +>seq_354469_x212 +TCACCGGGTTAACACTTGCAGT +>seq_354681_x211 +TCAGCGGGTGGAAACTAGCAGT +>seq_354892_x210 +TCACCGGGTGCACACTTGCAGT +>seq_355102_x209 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+ACACCGGGTGGAAACTAGCAGT +>seq_365851_x101 +TCACCGGGTAGAAACTAGCAGT +>seq_365952_x99 +AATCACCGGGTGGAAACTAGCAGT +>seq_366051_x97 +TCACCGGGTGAACATTTGCAGT +>seq_366148_x95 +TCACCGGGTGAAAATTAGCATG +>seq_366243_x94 +TCACCGGGTGGAAAATAGCAG +>seq_366337_x94 +TCACCGGTTGAACACTTGCAGT +>seq_366431_x93 +CCACCGGGTGAACACTTGCAGT +>seq_366524_x92 +TCACCGGGTAAACACTTGCAGT +>seq_366616_x91 +TCACCGGGTGGANACTAGCAG +>seq_366707_x90 +TCACCGGGTGTACATTAGCTAA +>seq_366797_x89 +TCACCGGGTGTACATCAGCTAC +>seq_366886_x88 +TCACCGGGTGGAAACTAG +>seq_366974_x88 +TCACCGGGTGTAAATCAGCTT +>seq_367062_x87 +AATCACCGGGTGAACACTTGCAGT +>seq_367149_x86 +TCAGCGGGTGAACACTTGCAGT +>seq_367235_x86 +TCACCCGGTGGAAACTAGCAGT +>seq_367321_x85 +TCACCGGGTGGAACCTAGCAGT +>seq_367406_x84 +TCACCGGGTGTACATCCGCTAA +>seq_367490_x83 +TNACCGGGTGAACACTTGCAGT +>seq_367573_x83 +TCACCGGGTGTACATCAGCTCA +>seq_367656_x78 +TCACCGGGTGAANATTCGCATG +>seq_367734_x78 +TCCCCGGGTGGAAACTAGCAGT +>seq_367812_x78 +TCACAGGGTGAACACTTGCAG +>seq_367890_x78 +TCACCGGGTGTAAATCAGCTAA +>seq_367968_x76 +TGTGGGTGTCCGTTGCGGTGCTA +>seq_368044_x74 +CACCGGGTGTACATCAGCTAA +>seq_368118_x72 +TCACCGGGTGTACATCAGTTAA +>seq_368190_x71 +ACACCGGGTGAACACTTGCAGT +>seq_368261_x70 +TCACCCGGTGAACACTTGCAGT +>seq_368331_x70 +TCACCGGGTGTACATCAGATAA +>seq_368401_x69 +TCACCGGGTGTACATCACCTAA +>seq_368470_x69 +ACCGGGGGGAAACTAGCAGT +>seq_368539_x67 +TCACCGGGTGAACACTTGCGGT +>seq_368606_x67 +ACCGGGTGGAAACTAGCAG +>seq_368673_x66 +TCACCGCGTGAAAATTCGCATG +>seq_368739_x66 +TCACCGGGTGAAAATTCTCATG +>seq_368805_x66 +CTCACCGGGTGAACACTTGCAGT +>seq_368871_x65 +TCAACGGGTGTACATCAGCTAA +>seq_368936_x64 +TCACCGGGTGTACATCAGC +>seq_369000_x64 +TCACCGGGTGGAAACTAGCGGT +>seq_369064_x62 +TCACCGGGTGAACACTTGCAAT +>seq_369126_x62 +TCACCGGGTGAACCCTTGCAGT +>seq_369188_x61 +TCACCGGGTGACCACTTGCAGT +>seq_369249_x61 +TCACCGGGTGTAGATCAGCTAA +>seq_369310_x61 +CTCACCGGGTGGAAACTAGCAGT +>seq_369371_x60 +TCACCGGGGGAACACTTGCAG +>seq_369431_x59 +TCAACGGGTGAAAATTCGCATG +>seq_369490_x59 +TCACCGGGTGAACATCAGCTAA +>seq_369549_x59 +TCACCGGGTGTACTTCAGCTAA +>seq_369608_x57 +TCACCGGGTGGAAACTAGCAGTG +>seq_369665_x55 +TCACCGGGTGAACACATGCAGT +>seq_369720_x53 +TCACCGGGTGTACATCAACTAA +>seq_369773_x52 +TCACCGGGTGTATATCAGCTAA +>seq_369825_x52 +AATCACCGGGTGTACATCAGCTAA +>seq_369877_x52 +TCACCGGGTGTACATCTGCTAA +>seq_369929_x51 +TCACCGGGTGGAAACTAGCAGTC +>seq_369980_x50 +ACCCGGTGGAAACTAGCAGT +>seq_370030_x50 +AGCTGATTTCGTCTTGGTAAT +>seq_370080_x48 +TAACCGGGTGTACATCAGCTAA +>seq_370128_x47 +TCACCGGGTGCAAATTCGCATG +>seq_370175_x47 +TCACCGGGTGTACATCNGCTAA +>seq_370222_x46 +TCACCGGGTGTACATCAGNTAA +>seq_370268_x46 +ACCGGGCGGAAACTAGCAGT +>seq_370314_x46 +TCACCGGGTGTACATCGGCTAA +>seq_370360_x45 +TCACCGGGTGTACATCAGCTTA +>seq_370405_x44 +ACCGGGTGAACACTTGCAG +>seq_370449_x44 +TTACCGGGTGTACATCAGCTAA +>seq_370493_x44 +TCGCCGGGTGGAAACTAGCAGT +>seq_370537_x43 +TCACCGCGTGGAAACTAGCAG +>seq_370580_x42 +GGTGGTTTTTCTCTGCAGTGATA +>seq_370622_x42 +TCACCGGGTTTACATCAGCTAA +>seq_370664_x41 +TCACCGGGTGGAAACAAGCAGT +>seq_370705_x41 +TCACCGGGTGGAAACTATCAG +>seq_370746_x41 +TCACAGGGTGGAAACTAGCA +>seq_370787_x41 +TCACCGGGCGAACACTTGCAG +>seq_370828_x40 +TCACCGGCTGTACATCAGCTAA +>seq_370868_x40 +TCACCGGGTGAACGCTTGCAGT +>seq_370908_x40 +TCACCGGATGTACATCAGCTAA +>seq_370948_x40 +TCACCGGGTGGAAGCTAGCAGT +>seq_370988_x40 +TCACCGGGTGGAAACTAGGAGT +>seq_371028_x39 +TCACCGGGTGAACAGTTGCAGT +>seq_371067_x39 +TCACCGGNTGGAAACTAGCAGT +>seq_371106_x39 +TCAACGGGTGGAAACTAGCAG +>seq_371145_x39 +TCACCGGGTGTACATCAGCTGA +>seq_371184_x38 +TCACGGGGTGGAAACTAGCAGT +>seq_371222_x38 +TCACCGGNTGAACACTTGCAGT +>seq_371260_x37 +TCACCGGGTGAACACTTGGAGT +>seq_371297_x37 +CGCCAATTTTCGCTTCAGTGCTA +>seq_371334_x37 +TCATCGGGTGTACATCAGCTAA +>seq_371371_x37 +TCACCGGGGGGAAACTAGCA +>seq_371408_x36 +TCACCGGGTGAAAATTCGCATGT +>seq_371444_x36 +TCACCGGGTGAAAATTCGCAGG +>seq_371480_x36 +TCCCCGGGTGAACACTTGCAGT +>seq_371516_x35 +ATCACCGGGTGGAAACTAGCAGT +>seq_371551_x34 +CACCGGGTGGAAACTAGCAGTT +>seq_371585_x34 +TCACCTGGTGTACATCAGCTAA +>seq_371619_x34 +TCACTGGGTGTACATCAGCTAA +>seq_371653_x34 +TCACCGGGTGAAAATTCGCATA +>seq_371687_x34 +TCACCGGGTGGAAACTAGCAA +>seq_371721_x34 +ATCACCGGGTGTACATCAGCTAA +>seq_371755_x33 +TCTCCGGGTGGAAACTAGCAGT +>seq_371788_x33 +TCACCGGGAGAACACTTGCAG +>seq_371821_x33 +TCACCGGGTGTAAATCAGCTTA +>seq_371854_x33 +TCACCGGGAGAAAAACTGGAGC +>seq_371887_x33 +ACCGGGTGTAAATCAGCTTG +>seq_371920_x33 +ACCGGGCGAACACTTGCAGT +>seq_371953_x32 +TCACCGAGTGTACATCAGCTAA +>seq_371985_x32 +TCACCGGGTGGAAATTCGCATG +>seq_372017_x32 +ACCGGGTGGAAACTAGCAGTT +>seq_372049_x31 +TCACCAGGTGTACATCAGCTAA +>seq_372080_x31 +TCACCGGGTGTAAATCAGCTTGT +>seq_372111_x31 +TCACCGGGTCTACATCAGCTAA +>seq_372142_x31 +TCACAGGGTGTAAATCAGCTTG +>seq_372173_x31 +TCACCGGGTGAANACTTGCAG +>seq_372204_x30 +TCACCGGGTGAACATTCGCATG +>seq_372234_x30 +TCACCGGGTGAAAATTTGCATG +>seq_372264_x30 +TCACAGGGTGTACATCAGCTA +>seq_372294_x30 +TCACCGGGTGGAAACTAGTAG +>seq_372324_x29 +AGTGGATGTATGCCATGATGATA +>seq_372353_x29 +TTACCGGGTGAAAATTCGCATG +>seq_372382_x29 +TCACTGGGTGAAAATTCGCATG +>seq_372411_x29 +ACCGGGTGAACACTTGCAGTT +>seq_372440_x28 +TCACCGGGTGTACATCAGCTAAC +>seq_372468_x28 +TCACCGGGTGATCACTTGCAGT +>seq_372496_x27 +TCGCCGGGTGAACACTTGCAGT +>seq_372523_x27 +TCACCGGGTGGAGACTAGCAG +>seq_372550_x27 +TCACCGGGTGTACATCAG +>seq_372577_x27 +TCACCGGGTGAAAATTCACATG +>seq_372604_x27 +TGACCGGGTGTACATCAGCTAA +>seq_372631_x27 +TCACCGGGTGAAAAATCACCTA +>seq_372658_x27 +TCACCGGGGGTAAATCAGCTTG +>seq_372685_x26 +TAACCGGGTGAAAATTCGCATG +>seq_372711_x26 +TCACCGGGTGTACAGCAGCTAA +>seq_372737_x26 +TCACCGCGTGAACACTTGCAG +>seq_372763_x26 +TCACCGGGTGGACACTAGCAG +>seq_372789_x26 +TCACCGGGTGAGCACTTGCAGT +>seq_372815_x25 +TCACCGGGTGAAAATTCGCA +>seq_372840_x25 +TCACCGGGCGGAAACTAGCA +>seq_372865_x25 +TCACCGGGTGTAAATTCGCATG +>seq_372890_x25 +TCACCGGGTGAACAATTGCAG +>seq_372915_x25 +TCACCGGGTGTACCTCAGCTAA +>seq_372940_x24 +TCACCGGGTGGTAACTAGCAG +>seq_372964_x24 +TCACCGGGTGTACATCAGCGAA +>seq_372988_x24 +TCACAGGGTGAACACTTGCA +>seq_373012_x24 +TCACCGGGTGAACACTTGC +>seq_373036_x24 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+>seq_373588_x20 +TCACCGGGTGAAAATTCGCTTG +>seq_373608_x20 +TCACCGGGTGAACACTTG +>seq_373628_x20 +TCACCTGGTGAAAATTCGCATG +>seq_373648_x20 +CCACCGGGTGTACATCAGCTAA +>seq_373668_x20 +ATCACCGGGTGAACACTTGCAG +>seq_373688_x20 +NCACCGGGTGGAAACTAGCAGT +>seq_373708_x20 +TCACCGGGAGAAAAACTGGAGTA +>seq_373728_x19 +TCACCGGGTGACAATTCGCATG +>seq_373747_x19 +CACCGGGTGTACATCAGCTAAA +>seq_373766_x19 +TCACCGGGTGCAAATCAGCTTG +>seq_373785_x19 +TCACCGGATGAAAATTCGCATG +>seq_373804_x19 +AATCACCGGGTGAAAATTCGCATG +>seq_373823_x19 +TCACCGGGAGGAAACTAGCA +>seq_373842_x19 +TCACCGGGTGAAAATTCGAATG +>seq_373861_x19 +TCACCGGGTGAACACTTGCAGTG +>seq_373880_x19 +TCACCGGGAGTAAATCAGCTTG +>seq_373899_x19 +TCACCGTGTGTACATCAGCTAA +>seq_373918_x19 +TCACCGGCTGGAAACTAGCAG +>seq_373937_x19 +TCACCGGGTGAACACTTTCAG +>seq_373956_x19 +AGCTGATTTCGTCTTGGTAATAT +>seq_373975_x18 +TCACCGGGAGAACACTTGCA +>seq_373993_x18 +TCACCGGGTGGAAACTNGCAG +>seq_374011_x18 +CACCGGGGGAACACTTGCAGT +>seq_374029_x18 +TCACCGGGTGTACATCAGCTAAG +>seq_374047_x18 +TCACCGGGTGGAAACTAGAAG +>seq_374065_x18 +CACCGGGTGTACATCAGCTAAT +>seq_374083_x18 +TCACCGGGAGAAAAACTGGTGT +>seq_374101_x18 +TCACCGGTTGTACATCAGCTAA +>seq_374119_x18 +TCACCGGGTGAAAATTCGTATG +>seq_374137_x18 +TCACCGGGAGTACATCAGCTA +>seq_374155_x18 +TCACCGGGTATACATCAGCTAA +>seq_374173_x17 +TCACCGGGTGGAAACTAACAG +>seq_374190_x17 +TCACCGGGAGAAAAACTGGAGA +>seq_374207_x17 +AATCACCGGGTGGAAACTAGCAG +>seq_374224_x17 +TCACCGGGTGGAAACTAGCTG +>seq_374241_x17 +TCAGCGGGTGTACATCAGCTAA +>seq_374258_x17 +TCACCGGGTGAAATTTCGCATG +>seq_374275_x17 +TCAGCGGGTGGAAACTAGCAG +>seq_374292_x17 +AGCTGATTTCGTCTTGGTAA +>seq_374309_x17 +TCACCGGGCGTAAATCAGCTTG +>seq_374326_x17 +TCACCGGGTGTAAATTAGCTTG +>seq_374343_x16 +GCACCGGGTGAAAATTCGCATG +>seq_374359_x16 +ACCGGGGGAACACTTGCAGT +>seq_374375_x16 +TCACCGGGTGAACACTTGCAT +>seq_374391_x16 +TCATCGGGTGAAAATTCGCATG +>seq_374407_x16 +CACCGGGGGGAAACTAGCAGT +>seq_374423_x16 +CTCACCGGGTGTACATCAGCTAA +>seq_374439_x16 +CACCGGGTGAACACTTGCAGTG +>seq_374455_x16 +TCACCGGGTGGAAACTACCAG +>seq_374471_x16 +TGACCGGGTGGAAACTAGCAG +>seq_374487_x16 +GCACCGGGTGTACATCAGCTAA +>seq_374503_x16 +TAACCGGGTGGAAACTAGCAG +>seq_374519_x16 +ACCGGGTGAACACTTGCAGTA +>seq_374535_x16 +ACCGGGTGGAAACTAGCCGT +>seq_374551_x16 +TCACCGGGTGAAGATTCGCATG +>seq_374567_x15 +TCANCGGGTGGAAACTAGCAGT +>seq_374582_x15 +TCACCGGGTGGAAACTAGNAG +>seq_374597_x15 +TCACCGGGTGTAAATCAGCTTC +>seq_374612_x15 +TCACCGGGNGGAAACTAGCAGT +>seq_374627_x15 +TCACCGGGTAAAAATTCGCATG +>seq_374642_x15 +TCACCGGGTGTAAATAAGCTTG +>seq_374657_x15 +TCACCGGGTGGAAAATAGCA +>seq_374672_x15 +ACCGGGAGGAAACTAGCAGT +>seq_374687_x14 +TGACCGGGTGAAAATTCGCATG +>seq_374701_x14 +TCACCGGGTGAAAATTGGCATG +>seq_374715_x14 +TCACCGGGTGGGAACTAGCAG +>seq_374729_x14 +TCACCGGGTGAAAACTTGCA +>seq_374743_x14 +TCACCGGGTGGCAACTAGCAG +>seq_374757_x14 +TGTGGGTGTCCGTTGCGGTGCT +>seq_374771_x14 +TCACCGGGTGAACACTGGCAG +>seq_374785_x14 +TCCCCGGGTGTACATCAGCTAA +>seq_374799_x14 +TCACCGGGTGAAAATTCGNATG +>seq_374813_x14 +TCACCGGGTGGAAACTAGCAC +>seq_374827_x14 +TCACTGGGTGGAAACTAGCAG +>seq_374841_x14 +TCACCGGGTGTACATCAGCAAA +>seq_374855_x14 +TCACCGGGTGGAAATCAGCTTG +>seq_374869_x13 +TCACCGGGTGTTCATCAGCTAA +>seq_374882_x13 +TCATCGGGTGGAAACTAGCAG +>seq_374895_x13 +TCACCGGGTGAAAATTCCCATG +>seq_374908_x13 +ACCGGGTGGAAACTAGCAGC +>seq_374921_x13 +CCACCGGGTGGAAACTAGCAG +>seq_374934_x13 +ACCGGGTGGAAAATAGCAGT +>seq_374947_x13 +TCACCGGGAGAAAAACTGGAGTAA +>seq_374960_x13 +CACCGGGTGGAAACTAGCAG +>seq_374973_x13 +TCACCGGGTGATAATTCGCATG +>seq_374986_x13 +TCACCGGGTGGAAAGTAGCAG +>seq_374999_x13 +TCACCCGGTGTACATCAGCTAA +>seq_375012_x13 +TCACCGGGTTGAAACTAGCAG +>seq_375025_x13 +TCACCGGGTGGAAACTAGCT +>seq_375038_x13 +ACACCGGGTGTACATCAGCTAA +>seq_375051_x13 +TCACCGGGTTAAAATTCGCATG +>seq_375064_x12 +TCACCGGGTGAGAATTCGCATG +>seq_375076_x12 +ATCACCGGGTGAAAATTCGCATG +>seq_375088_x12 +ATCACCGGGAGAAAAACTGGAGT +>seq_375100_x12 +TNACCGGGTGGAAACTAGCAG +>seq_375112_x12 +TCACCGGGAGAAAAACTGGAGG +>seq_375124_x12 +ACCCGGTGAACACTTGCAGT +>seq_375136_x12 +TCACCGGGTGAAAATCCGCATG +>seq_375148_x12 +ACCGGGAGAACACTTGCAGT +>seq_375160_x12 +TCACCGGGAGAAAAATTGGAGT +>seq_375172_x12 +TCACCGGGTGGAAACTAGCCG +>seq_375184_x12 +TCACCGGGTGAACACTTGCTG +>seq_375196_x12 +TCACCGGGTGTAAATCAGCTTGA +>seq_375208_x12 +TCACCGGGTCAAAATTCGCATG +>seq_375220_x11 +TCACCGGGCGAACACTTGCA +>seq_375231_x11 +TGCTGGTTTCTTCCACAGTGGTA +>seq_375242_x11 +TCACCGTGTGGAAACTAGCAG +>seq_375253_x11 +ACCGGGTGGAAACTAGCA +>seq_375264_x11 +TCACCGGGTGAAAACTAGCAG +>seq_375275_x11 +ACCGGGCGTACATCAGCTAA +>seq_375286_x11 +TCACCGGGTGTAAATCAGC +>seq_375297_x11 +TCACCGGGTGAAAACTCGCATG +>seq_375308_x11 +TCACCGGGTGAACACCTGCAG +>seq_375319_x11 +TCACCGGGGGTACATCAGCTA +>seq_375330_x11 +TCACCGGGNGAACACTTGCAGT +>seq_375341_x11 +TCACCGGGTAGAAACTAGCAG +>seq_375352_x11 +TCACCGGGTGTCCATCAGCTAA +>seq_375363_x11 +TCACCGGGTGTGCATCAGCTAA +>seq_375374_x11 +TCACCGGGTGTACGTCAGCTAA +>seq_375385_x10 +TCACCGGGTGAACACTGGCA +>seq_375395_x10 +ACCGGGAGAAAAACTGGAGT +>seq_375405_x10 +TCACCGCGTGGAAACTAGCA +>seq_375415_x10 +TCACCGGGTGAACACTTGAAG +>seq_375425_x10 +TCACCGGGTGAAAAATCGCATG +>seq_375435_x10 +CACCGGGTGGAAACTAGCAGTA +>seq_375445_x10 +TCACCGGGTGTANATCAGCTTG +>seq_375455_x10 +AGCTGATTTCGTCTTGTTAATA +>seq_375465_x10 +TCACCGGGTGGAAACTGGCAG +>seq_375475_x10 +TCCCCGGGTGAAAATTCGCATG +>seq_375485_x10 +TCACCGGGAGCAAAACTGGAGT +>seq_375495_x10 +TCACCGGTTGAAAATTCGCATG +>seq_375505_x10 +TNACCGGGTGAAAATTCGCATG +>seq_375515_x10 +TCACCGGGTGTACATCAGCCAA +>seq_375525_x10 +CTCACCGGGTGAAAATTCGCATG +>seq_375535_x10 +TCACCGGGTGAACTCTTGCAG +>seq_375545_x10 +TCACNGGGTGAACACTTGCAGT +>seq_375555_x10 +TCACCGGGTGTAAATCATCTTG +>seq_375565_x10 +TCANCGGGTGAACACTTGCAGT +>seq_375575_x10 +TCACCGGGTGGAAACTTGCAG +>seq_375585_x10 +TCACCGGGTGTACATCAGGTAA +>seq_375595_x10 +CTATCACCGGGTGTACATCAGC +>seq_375605_x10 +TCACCGGGTGAAAAGTCGCATG +>seq_375615_x10 +ATCACCGGGTGAAAAATCACCTA +>seq_375625_x10 +TCAACGGGTGAACACTTGCAG +>seq_375635_x10 +TCACCGGGTGAAAATTCGCATGA +>seq_375645_x10 +TCACCCGGTGAAAATTCGCATG +>seq_375655_x10 +TCACCGGGTGAAACTTCGCATG +>seq_375665_x10 +TCACCGGGTGTACACCAGCTAA +>seq_375675_x10 +TCACCGGGTGGAAACTAGCG +>seq_375685_x9 +ACCGGGTGAACACTTGCAGC +>seq_375694_x9 +NCACCGGGTGAACACTTGCAGT +>seq_375703_x9 +TCACCGGGTGTACATCAGCTAG +>seq_375712_x9 +TCACCGTGTGAAAATTCGCATG +>seq_375721_x9 +ACCGGGTGAAAACTTGCAGT +>seq_375730_x9 +ACCGGGTGGAAACTAGCAGA +>seq_375739_x9 +TCACCGGGAGAAAAAATGGAGT +>seq_375748_x9 +CCACCGGGTGAAAATTCGCATG +>seq_375757_x9 +TCACCGGGTGTAAATCCGCTTG +>seq_375766_x9 +TCACCGGGTGAATACTTGCAG +>seq_375775_x9 +TCACCGGGTGCACATCAGCTA +>seq_375784_x9 +TCACCGGGTGGATACTAGCAG +>seq_375793_x9 +TCACCGGGTGAACACTTGCCG +>seq_375802_x9 +ACCGGGTGGAAACTAACAGT +>seq_375811_x9 +TCACNGGGTGGAAACTAGCAGT +>seq_375820_x9 +TCACCGGGTGTAAACTAGCAG +>seq_375829_x9 +ACCGGGTGGAAACTAGCAGG +>seq_375838_x9 +GATACTTCTAACAACTCGCTA +>seq_375847_x9 +GCACCGGGTGTAAATCAGCTTG +>seq_375856_x9 +GCACCGGGTGGAAACTAGCAG +>seq_375865_x9 +TCACCGGNTGTACATCAGCTAA +>seq_375874_x9 +TCACCGGGTGAAAATTCGCACG +>seq_375883_x9 +TCACCGCGTGAACACTTGCA +>seq_375892_x9 +TCACCGGGTGGAACCTAGCAG +>seq_375901_x9 +TCACCGGGTGGAAACTATCA +>seq_375910_x8 +TCAACGGGTGGAAACTAGCA +>seq_375918_x8 +TTACCGGGTGTAAATCAGCTTG +>seq_375926_x8 +ACCGGGTGGGAACTAGCAGT +>seq_375934_x8 +TCACCGGGTGGAAACTCGCA +>seq_375942_x8 +TCACCGCGTGTAAATCAGCTTG +>seq_375950_x8 +AGATGATTTCGTCTTGGTAATA +>seq_375958_x8 +TCACCGGGTGAACACTTGTAG +>seq_375966_x8 +TCGCCGGGTGTACATCAGCTAA +>seq_375974_x8 +TCTCCGGGTGAACACTTGCAGT +>seq_375982_x8 +ACCGGGTGAACACTTGCAGA +>seq_375990_x8 +TCACCGGCTGAACACTTGCAG +>seq_375998_x8 +TCACCGGGTGAAAATTCGCGTG +>seq_376006_x8 +ATCACCGGGTGAAAAATCACCT +>seq_376014_x8 +CCGGGTGGAAACTAGCAGT +>seq_376022_x8 +TCAACGGGTGTAAATCAGCTTG +>seq_376030_x8 +ACGCATCCAAAAGTCTCTA +>seq_376038_x8 +TCACCGGGAGTAAAACTGGAGT +>seq_376046_x8 +TCACCGGGTGGAAACCAGCAG +>seq_376054_x8 +TCACCGGGAGGAAAACTGGAGT +>seq_376062_x8 +TCACGGGGTGAAAATTCGCATG +>seq_376070_x8 +TCACCGGGTGAACACTTGCAC +>seq_376078_x8 +TCACCGGGGGAACACTTGCA +>seq_376086_x8 +CAACGGGTGAACACTTGCAGT +>seq_376094_x8 +ACCGGGTGAACACTTGCA +>seq_376102_x8 +AGCTGATTTCGTCTTGGTA +>seq_376110_x8 +TCACCGGGTGAAAATGCGCATG +>seq_376118_x8 +TCACCGGGTGTAAATCACCTTG +>seq_376126_x8 +TCACCTGGTGAACACTTGCAG +>seq_376134_x7 +TCACCGGGTGTACAACAGCTAA +>seq_376141_x7 +TCACCGGGTGAAAATACGCATG +>seq_376148_x7 +AGCTGTTTTCGTCTTGGTAATA +>seq_376155_x7 +CCACCGGGTGAACACTTGCAG +>seq_376162_x7 +GCACCGGGTGAACACTTGCAG +>seq_376169_x7 +TCACCGGGTGGAAACTAGNA +>seq_376176_x7 +TCACCGGGTGAACACTTGNAG +>seq_376183_x7 +TCACCGGGTGGAAACTANCAGT +>seq_376190_x7 +TCACTGGGTGAACACTTGCAG +>seq_376197_x7 +ACCGGGTGGAAATTAGCAGT +>seq_376204_x7 +TCACCGGGTGAACACTTCCAG +>seq_376211_x7 +TCACCGGGTGAAAAACTGGAGT +>seq_376218_x7 +ACACCGGGTGAAAATTCGCATG +>seq_376225_x7 +TTACCGGGTGGAAACTAGCAG +>seq_376232_x7 +CACCGGGTGTACATCAGCTA +>seq_376239_x7 +TCACCGGGTGTANATCAGCTA +>seq_376246_x7 +TCACCGGTTGGAAACTAGCAG +>seq_376253_x7 +TCACCGGGTTAACACTTGCAG +>seq_376260_x7 +CACCGGGTGAAAACTTGCAGT +>seq_376267_x7 +TCACCCGGTGGAAACTAGCAG +>seq_376274_x7 +TCACCGGGTAAACACTTGCAG +>seq_376281_x6 +TCACCGGGTGAAAATTCGCAAG +>seq_376287_x6 +TCNCCGGGTGAACACTTGCAGT +>seq_376293_x6 +TCACCGGGAGAAAAACGGGAGT +>seq_376299_x6 +TCACCGGGCGTACATCAGCTA +>seq_376305_x6 +TCACCGAGTGGAAACTAGCAG +>seq_376311_x6 +TCACCGGGTGTACATCAGCTTG +>seq_376317_x6 +AGCTGATTTCGTCTTGGTAATAA +>seq_376323_x6 +TCACCGGGTGAAAATTAGCAT +>seq_376329_x6 +AGTGGATGTATGCCATGATGATAT +>seq_376335_x6 +GAAAAGTGGAGCAGAACGAAAA +>seq_376341_x6 +ACCGGGTGAACACTTGAAGT +>seq_376347_x6 +TCACCGAGTGAACACTTGCAG +>seq_376353_x6 +TCGCCGGGTGAAAATTCGCATG +>seq_376359_x6 +TCACAGGGTGTACATCAGCT +>seq_376365_x6 +TCACCGGGTGTACATGAGCTAA +>seq_376371_x6 +AGCTGATTTCGTCTTTGTAATA +>seq_376377_x6 +TCACCTGGTGTAAATCAGCTTG +>seq_376383_x6 +TCCCCGGGTGGAAACTAGCAG +>seq_376389_x6 +TCACCAGGTGAACACTTGCAG +>seq_376395_x6 +ACCGGGTGAAAAATCACCTA +>seq_376401_x6 +TCACCGGCTGGAAACTAGCA +>seq_376407_x6 +ACACCGGGTGGAAACTAGCA +>seq_376413_x6 +TCACCGGGTGGAATCTAGCAG +>seq_376419_x6 +CACCGGGAGAACACTTGCAGT +>seq_376425_x6 +TCACCGGGTGAACACTAGCAG +>seq_376431_x6 +ATCACCGGGTGTACATCAGCTA +>seq_376437_x6 +TCACCGGGTGTAAATCAGCTGG +>seq_376443_x6 +TCACCGGGTGAATACTTGCA +>seq_376449_x6 +ACCGGGGGGAAACTAGCAG +>seq_376455_x6 +CAGCTGATTTCGTCTTGGTAATA +>seq_376461_x6 +TCACCGAGTGAACACTTGCA +>seq_376467_x6 +TCACCGGGTGTACATCATCTA +>seq_376473_x6 +ACCGCGTGAACACTTGCAGT +>seq_376479_x6 +AACGGGTGGAAACTAGCAGT +>seq_376485_x6 +TCACCGGGTGGTAACTAGCA +>seq_376491_x6 +TCACCAGGTGGAAACTAGCAG +>seq_376497_x6 +TCACCTGGTGGAAACTAGCA +>seq_376503_x6 +ACCGGGTGGACATCAGCTAA +>seq_376509_x6 +TCACCGGTTGTAAATCAGCTTG +>seq_376515_x6 +TCACAGGGTGAAAATTCGCAT +>seq_376521_x6 +TAACCGGGTGAACACTTGCAG +>seq_376527_x6 +TCCCAACTATTATTCTCGGAT +>seq_376533_x5 +TGCTGATTTCGTCTTGGTAATA +>seq_376538_x5 +TAACCGGGTGGAAACTAGCA +>seq_376543_x5 +TGACCGGGTGAACACTTGCA +>seq_376548_x5 +TCACCGGGTGTAAAGCAGCTTG +>seq_376553_x5 +CACCGGGCGAACACTTGCAGT +>seq_376558_x5 +TCACCGGGTGTACATCAGCTT +>seq_376563_x5 +TCACCGTGTGAACACTTGCAG +>seq_376568_x5 +TCACCGGCTGAACACTTGCA +>seq_376573_x5 +TCACCGGGTGAAGACTTGCAG +>seq_376578_x5 +AGCTGATTTCGTCTTGGGAATA +>seq_376583_x5 +TCACCGGGTGAACACGTGCAG +>seq_376588_x5 +TCATCGGGTGAACACTTGCAG +>seq_376593_x5 +TGACCGGGTGAACACTTGCAG +>seq_376598_x5 +ACCGGGTGAACACTTGCACT +>seq_376603_x5 +ACACCGGGTGAACACTTGCAG +>seq_376608_x5 +ACCGGGTGGAAACTAGAAGT +>seq_376613_x5 +TGTGGGTGTCCGTTGCGGTGCTT +>seq_376618_x5 +ACCGGGGGTACATCAGCTAA +>seq_376623_x5 +ACCGGGTGGAAANTAGCAGT +>seq_376628_x5 +TCACCGGGTGTAAATCAGATTG +>seq_376633_x5 +ACCGGGTGTACATCCGCTAA +>seq_376638_x5 +TCACCGGGTGGACACTAGCA +>seq_376643_x5 +TCACCGGGTGCACACTTGCAG +>seq_376648_x5 +TCACCGGGTGTAAATCGGCTTG +>seq_376653_x5 +TCACCTGGTGAACACTTGCA +>seq_376658_x5 +TCACCGGGTGGAAATTAGCA +>seq_376663_x5 +TCACCGGGTGAACACTTGCT +>seq_376668_x5 +TCACCGGGTGAACATTTGCAG +>seq_376673_x5 +TAACCGGGAGAAAAACTGGAGT +>seq_376678_x5 +TCACCGGGAGAAAAACTCGAGT +>seq_376683_x5 +TCACCGGGTGTAAATCAGCTTGG +>seq_376688_x5 +CACCGGGTGAACACTTGCAGC +>seq_376693_x5 +TCACCGGGTGTAAATCAG +>seq_376698_x5 +TCANCGGGTGTACATCAGCTAA +>seq_376703_x5 +TCACCGGGTGAATATTCGCATG +>seq_376708_x5 +ACCGGGTGGAAACTAGCACT +>seq_376713_x5 +TCTCCGGGTGTACATCAGCTAA +>seq_376718_x5 +TCACCGGGAGAAAAACTGGACT +>seq_376723_x4 +TCACCGGGTGGAAACTAGCAGTAG +>seq_376727_x4 +TCACCGGGTGGANACTAGC +>seq_376731_x4 +ACCGGGTGGAAACTATCAGT +>seq_376735_x4 +TCACCGGGTGAACACTTTCA +>seq_376739_x4 +AGCTGATTTCGTCTTGGCAATA +>seq_376743_x4 +TCACAGGGTGTAAATCAGCTT +>seq_376747_x4 +TCACCGGGAGAAAAACTGGA +>seq_376751_x4 +TCACCGGTTGAACACTTGCA +>seq_376755_x4 +TACCGGGTGAACACTTGCAGT +>seq_376759_x4 +ACCGGGTGTACATCAGCTAAA +>seq_376763_x4 +TCACTGGGTGGAAACTAGCA +>seq_376767_x4 +ACCCGGTGTACATCAGCTAA +>seq_376771_x4 +TCATCGGGTGTAAATCAGCTTG +>seq_376775_x4 +ATCACCGGGCGAACACTTGCAGT +>seq_376779_x4 +TCACCAGGTGTAAATCAGCTTG +>seq_376783_x4 +TCACCGGGTGAACACTTACA +>seq_376787_x4 +ACCGGGTGGTAACTAGCAGT +>seq_376791_x4 +TCACCGGGTGGAGACTAGCA +>seq_376795_x4 +TCGCCGGGTGAACACTTGCA +>seq_376799_x4 +TCACCGGGTGGAAACTAACA +>seq_376803_x4 +TCACCGGGTGGAAACTAGCC +>seq_376807_x4 +TCACCGGGTGTACACTTGCAG +>seq_376811_x4 +TCACCNGGTGGAAACTAGCAGT +>seq_376815_x4 +TCACCGGGTGTAATTCAGCTTG +>seq_376819_x4 +ACCGGGGGAAAATTCGCATG +>seq_376823_x4 +ACCGGGTGAACCCTTGCAGT +>seq_376827_x4 +TCACGGGGTGGAAACTAGCAG +>seq_376831_x4 +ATCACCGGGAGAACACTTGCAGT +>seq_376835_x4 +TCACCGGATGAACACTTGCAG +>seq_376839_x4 +ATCACCGGGGGAACACTTGCAGT +>seq_376843_x4 +TCACCGGGTGTACATCAGATA +>seq_376847_x4 +ACCGGGTCAACACTTGCAGT +>seq_376851_x4 +TCACCGGGTGAAAAATCACCT +>seq_376855_x4 +TCACCGGGTGAACACTTGCAGTGC +>seq_376859_x4 +TCACCGGGAGAAAAACTGGTG +>seq_376863_x4 +TCACCGGGAGAAAAACTGTAGT +>seq_376867_x4 +ACCGGGTCGAAACTAGCAGT +>seq_376871_x4 +ACCGGGTGGAAACTAGCTGT +>seq_376875_x4 +TCACCGGGAGAAAAACTTGAGT +>seq_376879_x4 +ATCACCGGGTGAAAAATCACCTT +>seq_376883_x4 +TCACCGGGTGTACATAAGCTA +>seq_376887_x4 +ACCGGTTGGAAACTAGCAGT +>seq_376891_x4 +TCACCGGGTGTAAATCAGCGTG +>seq_376895_x4 +ACCGGGTGGCAACTAGCAGT +>seq_376899_x4 +TCACCGGGTGTAAACCAGCTTG +>seq_376903_x4 +CGGGTGGAAACTAGCAGT +>seq_376907_x4 +AGCTGATTTCGTCTTGGTAATT +>seq_376911_x4 +TCACCGGTTGAACACTTGCAG +>seq_376915_x4 +TATCACCGGGTGAACACTTGCAG +>seq_376919_x4 +TCACCTGGTGTACATCAGCTA +>seq_376923_x4 +TCACCGGGTGAACACATGCAG +>seq_376927_x4 +TCGGGTGGAAACTAGCAGT +>seq_376931_x4 +TCACCGGGTGGACACTTGCAG +>seq_376935_x4 +GCACCGGGTGGAAACTAGCA +>seq_376939_x4 +TCACCGGGTGGAAACTAGCAGTGC +>seq_376943_x4 +TCACCGGGTGAACAATTGCA +>seq_376947_x4 +CTCACCGGGAGAAAAACTGGAGT +>seq_376951_x4 +ACAGGGTGAACACTTGCAGT +>seq_376955_x4 +ACCGGGTGTACATCAGCTA +>seq_376959_x4 +GGTGGTTTTTCTCTTCAGTGATA +>seq_376963_x4 +TCACCTGGAGAAAAACTGGAGT +>seq_376967_x4 +TCACCGGGTGTACATCCGCTA +>seq_376971_x4 +ACCGGGTGAACANTTGCAGT +>seq_376975_x4 +TCACCGGGAGAAAAACTAGAGT +>seq_376979_x4 +AGTTGATTTCGTCTTGGTAATA +>seq_376983_x4 +TCCCCGGGTGAACACTTGCAG +>seq_376987_x4 +ACAGGGTGGAAACTAGCAGT +>seq_376991_x4 +TCACCGGGTGTAAATCAGCTTGC +>seq_376995_x4 +TCACCGAGTGTAAATCAGCTTG +>seq_376999_x4 +TCAGCGGGAGAAAAACTGGAGT +>seq_377003_x4 +TCACCGAGTGGAAACTAGCA +>seq_377007_x3 +ACCGAGTGGAAACTAGCAGT +>seq_377010_x3 +ACCGGGTGGAAACTACCAGT +>seq_377013_x3 +TCACCGGGAGAAAAACTGGAGCA +>seq_377016_x3 +TCACCGGGTGGACATCAGCTA +>seq_377019_x3 +TCACCGGGTGGAAACTAGCAGTTG +>seq_377022_x3 +CACCGGGTGAACACTTGCAGA +>seq_377025_x3 +TCTCCGGGTGAACACTTGCAG +>seq_377028_x3 +TCACCGGGTGTACATCAGNTA +>seq_377031_x3 +AGCTGATTTCGTCTTGGTAATC +>seq_377034_x3 +TCACCGGGTGAAAACTAGCA +>seq_377037_x3 +TCTCCGGGTGGAAACTAGCAG +>seq_377040_x3 +TCACCGGGTGAACATCAGCTA +>seq_377043_x3 +TCACCGGGTGTACATCAGTTA +>seq_377046_x3 +TCACCGGGTGAACAGTTGCA +>seq_377049_x3 +TCACCGGGTGGAAACTAGCAGN +>seq_377052_x3 +TCACCGGGGGAAAAATCACCTA +>seq_377055_x3 +ATCACCGGGTGGAAACTAGCAGC +>seq_377058_x3 +NCACCGGGTGTACATCAGCTAA +>seq_377061_x3 +AGCTGATTTCGTCTTGGAAATA +>seq_377064_x3 +ACCGGGTGGAAACTAGNAGT +>seq_377067_x3 +TCACCGGGTGACCACTTGCAG +>seq_377070_x3 +AGCTGATTTAGTCTTGGTAATA +>seq_377073_x3 +CACCGGGTGAAAATTCGCATG +>seq_377076_x3 +TCACCGGGTGGAAACTAGCGG +>seq_377079_x3 +TCACCGGGTGGAAANTAGCAGT +>seq_377082_x3 +AATCACCGGGTGAACACTTGCAG +>seq_377085_x3 +AGCTGATTTCGGCTTGGTAATA +>seq_377088_x3 +TCACCGGGGGGAAACTAGC +>seq_377091_x3 +TCACCGGGTGTACATCAGCTC +>seq_377094_x3 +TNACCGGGTGTAAATCAGCTTG +>seq_377097_x3 +TCCGGGTGGAAACTAGCAGT +>seq_377100_x3 +ATCACCGGGTGTAAATCAGCTTG +>seq_377103_x3 +ACCGGGTGAAAATTCGCAT +>seq_377106_x3 +TCACCGCGAGAAAAACTGGAGT +>seq_377109_x3 +ATCACCGGGTGAACACTTGCATT +>seq_377112_x3 +TCACCGGGTGGCAACTAGCA +>seq_377115_x3 +GTGTGGGTGTCCGTTGCGGTGCT +>seq_377118_x3 +TCACCNGGTGAACACTTGCAGT +>seq_377121_x3 +TCACCGGGTGAANATTCGCAT +>seq_377124_x3 +TCACCGGGGGAAAATTCGCAT +>seq_377127_x3 +TCACCGGATGGAAACTAGCA +>seq_377130_x3 +CACCGGGAGGAAACTAGCAGT +>seq_377133_x3 +ATCACCGGGTGAACACTTGCAGTT +>seq_377136_x3 +ACCGGGAGAAAAACTGGAG +>seq_377139_x3 +TCACTGGGTGTACATCAGCTA +>seq_377142_x3 +ACTGGGTGGAAACTAGCAGT +>seq_377145_x3 +TGCTGATTTCGTCTTGGTAAT +>seq_377148_x3 +TCACCGGGTGAACACTTCCA +>seq_377151_x3 +AGCTAATTTCGTCTTGGTAATA +>seq_377154_x3 +TCACCGGGTTAACACTTGCA +>seq_377157_x3 +ACCGGGTGTACATCAGATAA +>seq_377160_x3 +ACCGGGTTAACACTTGCAGT +>seq_377163_x3 +CGCCAATTTTCGCTTCATTGCTA +>seq_377166_x3 +AGCTGATTTCGTCTTGGTATTA +>seq_377169_x3 +ACCGGGTGAACAATTGCAGT +>seq_377172_x3 +ACCGAGTGAACACTTGCAGT +>seq_377175_x3 +CTCACCGGGTGGAAACTAGCAG +>seq_377178_x3 +TCACCGGGAGAAAAACTGCAG +>seq_377181_x3 +TCACCGGGGGGAAACTAGCAGTG +>seq_377184_x3 +ACCGGGTGAACACTTGCAGG +>seq_377187_x3 +CACCGGGTGGAAAATAGCAGT +>seq_377190_x3 +TCACCGGGTGAACACTAGCA +>seq_377193_x3 +TCACCGGGTGTAAACTAGCA +>seq_377196_x3 +TCACTGGGAGAAAAACTGGAGT +>seq_377199_x3 +TCACCGTGTGTAAATCAGCTTG +>seq_377202_x3 +CACCGGGTGAACACTTGCTGT +>seq_377205_x3 +AGCTGATTTCGTCTTGCTAATA +>seq_377208_x3 +TCACCGGGAGAAAAACTGAAGT +>seq_377211_x3 +TCACCGGGAGGAAAACTGGAG +>seq_377214_x3 +TNACCGGGAGAAAAACTGGAGT +>seq_377217_x3 +TCACCGGGTGAAAATCAGCTTG +>seq_377220_x3 +ACCGGGTGTACATCAGGTAA +>seq_377223_x3 +TCACCGGCTGTACATCAGCTA +>seq_377226_x3 +ACCGGGTGAACACTTCCAGT +>seq_377229_x3 +TCACCGGAAGAAAAACTGGAGT +>seq_377232_x3 +CGGGTGAACACTTGCAGT +>seq_377235_x3 +TCACCGGGTGGAAACAAGCAG +>seq_377238_x3 +TCACTGGGTGTAAATCAGCTTG +>seq_377241_x3 +CACCGGGTGTAGATCAGCTAA +>seq_377244_x3 +TCACCGGGTGTAAATCAGCTA +>seq_377247_x3 +TCACCGGGTGAAAAATCACCTAT +>seq_377250_x3 +CACCGGGCGGAAACTAGCAGT +>seq_377253_x3 +TCACCGGGTGAACTCTTGCA +>seq_377256_x3 +TCACCGGGTGAACACTTGCAGTGA +>seq_377259_x3 +TCACCGGGTGTAAATCTGCTTG +>seq_377262_x3 +TCACCGCGTGTACATCAGCTA +>seq_377265_x3 +TTACCGGGTGAACACTTGCAG +>seq_377268_x3 +ACCGCGTGGAAACTAGCAGT +>seq_377271_x3 +TCACCGGGTGAAAATTCGGATG +>seq_377274_x3 +AGCTGATTTCGTTTTGGTAATA +>seq_377277_x3 +ACCGGGTGTACACTTGCAGT +>seq_377280_x3 +ACCGGGTGTACATAAGCTAA +>seq_377283_x3 +TCATCGGGTGGAAACTAGCA +>seq_377286_x3 +CACCGGGTGAACACTTGCAGTC +>seq_377289_x3 +ATCACCGGGTGAACACTTGCA +>seq_377292_x3 +CCACCGGGTGGAAACTAGCA +>seq_377295_x3 +TCACCGGGTGAACACTCGCAG +>seq_377298_x3 +TCACCGGGTGGAAACGAGCAG +>seq_377301_x3 +CCGGGTGAACACTTGCAGT +>seq_377304_x3 +TCACAGGGTGGAAACTAGCAGTG +>seq_377307_x3 +ACCGGGTGGAAAGTAGCAGT +>seq_377310_x3 +ACCGGGTGTACANCAGCTAA +>seq_377313_x3 +AGCTGATTTTGTCTTGGTAATA +>seq_377316_x3 +TCACCGGGTGTACATCAGCAA +>seq_377319_x3 +AATCACCGGGTGTAAATCAGCTTG +>seq_377322_x3 +ACTGGGTGAACACTTGCAGT +>seq_377325_x2 +TCGCCGGGTGGAAACTAGCAG +>seq_377327_x2 +TTCACCGGGTGGAAACTAGCAG +>seq_377329_x2 +TCACCGGGTGAAAATTCGCATGC +>seq_377331_x2 +TCACCGGGTGAAAAATCACCTAA +>seq_377333_x2 +TNACCGGGTGAACACTTGCAG +>seq_377335_x2 +TCAACGGGTGAACACTTGCA +>seq_377337_x2 +TTACCGGGTGTACATCAGCTA +>seq_377339_x2 +TCACCGGGCGAAAAACTGGAGT +>seq_377341_x2 +TCACCGGGTGGAAACTACC +>seq_377343_x2 +ACCGGGTAGAAACTAGCAGT +>seq_377345_x2 +TCACCGGGTGTAACTCAGCTTG +>seq_377347_x2 +AACGGGTGTACATCAGCTAA +>seq_377349_x2 +TCACCGGGNGAAAATTCGCATG +>seq_377351_x2 +ACCGGGTCAAAATTCGCATG +>seq_377353_x2 +ATCACCGGGTGAACACTTGCAGC +>seq_377355_x2 +TCACCGGGTGAACACTTGGAG +>seq_377357_x2 +TCANCGGGTGAAAATTCGCATG +>seq_377359_x2 +TCACCGGGGGTAAATCAGC +>seq_377361_x2 +TCACAGGGTGTAAATCAGCT +>seq_377363_x2 +AGCTGAGTTCGTCTTGGTAATA +>seq_377365_x2 +ACCGGGTGAAAATTAGCATG +>seq_377367_x2 +ACCGGGTGTACCTCAGCTAA +>seq_377369_x2 +TCACAGGGTGAAAATTCGCA +>seq_377371_x2 +GGTGGTTTTTCTCTGCAGTGATAAA +>seq_377373_x2 +ACCGGGTGAAAACTAGCAGT +>seq_377375_x2 +TCACCGGGTGTAAATCAACTTG +>seq_377377_x2 +TCACCAGGTGGAAACTAGCA +>seq_377379_x2 +TCACCGGGAGAAAGACTGGAGT +>seq_377381_x2 +ACCGGGTGGAAACTAGCATT +>seq_377383_x2 +TCACCGGGTGGAAAGTAGC +>seq_377385_x2 +ACCTGGTGAACACTTGCAGT +>seq_377387_x2 +CGCCAATTTTCGCTTCAGTGCTAT +>seq_377389_x2 +AGCTGATTTCGTCTTCGTAATA +>seq_377391_x2 +TCACCGGGAGAAAAACTGGCGT +>seq_377393_x2 +ACCGGGTGAACACGTGCAGT +>seq_377395_x2 +TCACCGGGTGTGAATCAGCTTG +>seq_377397_x2 +TCACCGTGTGAACACTTGCA +>seq_377399_x2 +TCACCGGGTGTAAATCAGCATG +>seq_377401_x2 +TCACCGGGTGGAAACTAGCAGTGGCG +>seq_377403_x2 +CACCGGGAGAAAAACTGGAGT +>seq_377405_x2 +TCACCGGGTGAAGACTTGCA +>seq_377407_x2 +TCGGGTGAACACTTGCAGT +>seq_377409_x2 +TCACCGGGGGAAAATTCGCA +>seq_377411_x2 +TCACCGGGTGAACACTTGCAGTGGTTC +>seq_377413_x2 +CGAAAAGGGGAGCAACGAAAAG +>seq_377415_x2 +ACCGGGTGGAAACTCGCAGT +>seq_377417_x2 +TCACCGGGTGGAACCTAGCA +>seq_377419_x2 +TCACCGGGTAGAAACTAGCA +>seq_377421_x2 +TCACCGGGTGGAAACTAGCAGTGAC +>seq_377423_x2 +ACGAAAAGGAGATCTGGCACTG +>seq_377425_x2 +TCACAGGGAGAAAAACTGGAG +>seq_377427_x2 +TCACCGGGTGGAAACTAGCAGTGT +>seq_377429_x2 +TCACCGGCAGAAAAACTGGAGT +>seq_377431_x2 +ATCACCGGGTGGAAACTAGCAGTT +>seq_377433_x2 +TGACCGGGTGTAAATCAGCTTG +>seq_377435_x2 +TCACCGGGTCAACACTTGCAG +>seq_377437_x2 +TCAGCGGGTGAACACTTGCAG +>seq_377439_x2 +CACCGGGTGAAAAATCACCTAT +>seq_377441_x2 +ACCAGGTGAACACTTGCAGT +>seq_377443_x2 +TCACCGGGCGGAAACTAG +>seq_377445_x2 +TCACCGGGTGAAGACTTG +>seq_377447_x2 +TCACCGGGTGAACACTTGCAGTGATC +>seq_377449_x2 +TGGGGGTGTCCGTTGCGGTGCTA +>seq_377451_x2 +TCACCGGGTGGAAACTAGA +>seq_377453_x2 +TCACCGAGAGAAAAACTGGAGT +>seq_377455_x2 +CACCGGGGGTACATCAGCTAA +>seq_377457_x2 +ACCGGGTGTAAACTAGCAGT +>seq_377459_x2 +GGTGGTTTTTCTCTGCAGTGCTA +>seq_377461_x2 +CACCGGGTGAACACTTCCAGT +>seq_377463_x2 +GGTGGTTTTTTTCTGCAGTGATA +>seq_377465_x2 +TCACCGGGAGAAAAACAGGAGT +>seq_377467_x2 +CACCGGGTGTACATCAGCTAAG +>seq_377469_x2 +AGCGGGTGTACATCAGCTAA +>seq_377471_x2 +CACCGGGGGAAAATTCGCATG +>seq_377473_x2 +TCACCGGGTGAACACGTGCA +>seq_377475_x2 +CAACGGGTGGAAACTAGCAGT +>seq_377477_x2 +TCACCGGGTGTACATCAA +>seq_377479_x2 +ATCACCGGGTGGAAACTAGCAG +>seq_377481_x2 +TCACCGGGAGAAAACCTGGAGT +>seq_377483_x2 +TCACCGGGTGTAAGTCAGCTTG +>seq_377485_x2 +TCACCGGGTGGACATCAGCT +>seq_377487_x2 +ACCGGGTGGACACTAGCAGT +>seq_377489_x2 +ATCACCGGGTGTACATCAGCTAAT +>seq_377491_x2 +ACCGGGCGGAAACTAGCAG +>seq_377493_x2 +ACCTGATTTCGTCTTGGTAATA +>seq_377495_x2 +TCACCGGGTGTCAATCAGCTTG +>seq_377497_x2 +TCACCGGGTGAAAATTGGCAT +>seq_377499_x2 +ACCGGGTGTACATCACCTAA +>seq_377501_x2 +TCACCGGGTGTACATCAACTA +>seq_377503_x2 +TCACCGGGTATAAATCAGCTTG +>seq_377505_x2 +TACCGGGTGGAAACTAGCAGT +>seq_377507_x2 +TCACCGGGTGGATACTAGCAGTG +>seq_377509_x2 +CTCACCGGGTGTAAATCAGCTT +>seq_377511_x2 +TTCACCGGGTGGAAACTAGCAGT +>seq_377513_x2 +TCACAGGGTGGAAACTAGC +>seq_377515_x2 +TCACCGGGTGAACCCTTGCAG +>seq_377517_x2 +TCACCGGGAGCAAAACTGGAG +>seq_377519_x2 +ANCGGGTGGAAACTAGCAGT +>seq_377521_x2 +ATCACCGGGTGAACACTTGAAGT +>seq_377523_x2 +TCACCGGCAGAAAAACTGGAG +>seq_377525_x2 +AGCTGATTTCGTATTGGTAATA +>seq_377527_x2 +ATCACCGGGTGAACACTTGCAGTA +>seq_377529_x2 +ATCACCGGGAGAAAAACTGGAGTT +>seq_377531_x2 +TCACCGGGTGCAAACTAGCA +>seq_377533_x2 +AGTGGATGTATGCCATGATGAT +>seq_377535_x2 +CACCGGGTGTACATCAGCTAAC +>seq_377537_x2 +ACCCGGTGGAAACTAGCA +>seq_377539_x2 +TCACCGGGTGGAAACTAGT +>seq_377541_x2 +TCACCGGATGAACACTTGCA +>seq_377543_x2 +TCACCGGNTGGAAACTAGCAG +>seq_377545_x2 +TCACCGGGTGTAAATCNGCTTG +>seq_377547_x2 +TCACCGGGTGAACACTTGCAA +>seq_377549_x2 +ACCGTGTGAACACTTGCAGT +>seq_377551_x2 +TCACCGGGAGAANAACTGGAGT +>seq_377553_x2 +TTACCGGGTGAACACTTGCA +>seq_377555_x2 +TCATCGGGTGAACACTTGCA +>seq_377557_x2 +TCACTGGGTGAACACTTGCA +>seq_377559_x2 +TCNCCGGGTGGAAACTAGCAGT +>seq_377561_x2 +TCACCGGGTGGAAACTACCA +>seq_377563_x2 +ACACCGGGTGGAAACTAGCAG +>seq_377565_x2 +TCACCGGGTGAACACTTGCG +>seq_377567_x2 +TCCCCGGGAGAAAAACTGGAGT +>seq_377569_x2 +ACCGGGTGTACATCTGCTAA +>seq_377571_x2 +TCACCGGGTGAAAAACTGGAG +>seq_377573_x2 +TCAGCGGGTGTAAATCAGCTTG +>seq_377575_x2 +TCACCGGGTGGAAACTAGGAG +>seq_377577_x2 +TCACCGGGTGGAAGCTAGCAG +>seq_377579_x2 +ACCGGGAGTACATCAGCTAA +>seq_377581_x2 +TCACCGGGTGAAAGTTCGCATG +>seq_377583_x2 +ATCGGGTGGAAACTAGCAGT +>seq_377585_x2 +ACCGGGTGTACATCAGCT +>seq_377587_x2 +TCACCGGGTGTACATCAGCGA +>seq_377589_x2 +ACCGGGTGGAAACCAGCAGT +>seq_377591_x2 +TCACCGGGTCTAAATCAGCTTG +>seq_377593_x2 +AGCGGGTGAACACTTGCAGT +>seq_377595_x2 +TCACCGGGTGTACATCAGCTAAGT +>seq_377597_x2 +CACCGGGTGTAAATCAGCTTG +>seq_377599_x2 +TCACCGGGTGGAAACTAGTA +>seq_377601_x2 +ACCGGTTGAACACTTGCAGT +>seq_377603_x2 +TCACCGGGAGAAAAACTGGAC +>seq_377605_x2 +CTCACCGGGTGAACACTTGCA +>seq_377607_x2 +ACCGGGTGTACATCAGCTCA +>seq_377609_x2 +ACCGGGTGAACACTAGCAGT +>seq_377611_x2 +ACCGGGTGGACACTTGCAGT +>seq_377613_x2 +TCACCGGGTTGAAACTAGCA +>seq_377615_x2 +TAACCGGGTGAACACTTGCA +>seq_377617_x2 +TCACGGGGTGTACATCAGCTAA +>seq_377619_x2 +TCACCGGGTGGAAACTAGCAGTAGC +>seq_377621_x2 +ACCGGGTGTAAATCAGCTTT +>seq_377623_x2 +ACCGGGTGTACATCAGCTAT +>seq_377625_x2 +TCACCGGGTGTATATCAGCTA +>seq_377627_x2 +ATCACCGGGTGTACATCAGCTAAA +>seq_377629_x2 +TCACCGGGTGAACACTTGCAGTGG +>seq_377631_x2 +TCCCCGGGTGTAAATCAGCTTG +>seq_377633_x2 +GCCTCTACAAGTTGTGATCGT +>seq_377635_x2 +CACCGGGTGAACATCAGCTAA +>seq_377637_x2 +GGTGGTTTTTCTCTGCCGTGATA +>seq_377639_x2 +ATCACCCGGTGAACACTTGCAGT +>seq_377641_x2 +ACCGGGTGAAAATGCGCATG +>seq_377643_x2 +TGACCGGGTGGAAACTAGCA +>seq_377645_x2 +CGCCAATTTTCGCTTCAGTGCT +>seq_377647_x2 +TCACCGGGTCGAAACTAGCAG +>seq_377649_x2 +CACCGGGTGAACACTTACAGT +>seq_377651_x2 +TCACCGGGTGAGCACTTGCAG +>seq_377653_x2 +TCACCGGGTGGAAACCAGCA +>seq_377655_x2 +TCACCGGGAGAAAAACNGGAGT +>seq_377657_x2 +GGTGGTTTTTCTCTGCAGTGAT +>seq_377659_x2 +CCGGGTGTACATCAGCTAA +>seq_377661_x2 +ACCGGGTGAACACTGGCAGT +>seq_377663_x2 +AGCTGGTTTCGTCTTGGTAATA +>seq_377665_x2 +AGCTGATTTCGTCTTGGTCATA +>seq_377667_x2 +TCAGCGGGTGAACACTTGCA +>seq_377669_x2 +ACCGGGTGAAAATTCGCATT +>seq_377671_x2 +ACCGGGTAAACACTTGCAGT +>seq_377673_x2 +ACCGGGAGAAAAACTGGAGTT +>seq_377675_x2 +TCACCGGGTGGAAACTAGCAGTGCC +>seq_377677_x2 +TCACCGGGTTTACATCAGCTA +>seq_377679_x2 +AATCACCGGGTGTACATCAGCT +>seq_377681_x2 +AGTGGATGGATGCCATGATGATA +>seq_377683_x2 +TCACCGGGTGGAAACTAGAA +>seq_377685_x2 +ACCGGGTGGAGACTAGCAGT +>seq_377687_x2 +TCACCGGGTGAACACTTGCTGTG +>seq_377689_x2 +TCACCGGGTGTACATCATCT +>seq_377691_x2 +TCACCGGGTTAAAATTCGCAT +>seq_377693_x2 +ACCGGGTGAAAATTCTCATG +>seq_377695_x2 +TCACCGGGAGAAAAACTGGTGTA +>seq_377697_x2 +TCACCGGATGTAAATCAGCTTG +>seq_377699_x2 +CTATCACCGGGTGTACATCAGCT +>seq_377701_x2 +TTACCGGGAGAAAAACTGGAGT +>seq_377703_x2 +GCACCGGGTGTACATCAGCTA +>seq_377705_x2 +ACCGGGTGTAAATCAGCTTA +>seq_377707_x2 +TCACCGGGTGTAGATCAGCTTG +>seq_377709_x2 +ATCACCGGGTGAACACTTGCCGT +>seq_377711_x2 +ACCGGGAGGAAACTAGCAG +>seq_377713_x2 +AACGGGTGAACACTTGCAGT +>seq_377715_x2 +CACCGGGTGAACACTCGCAGT +>seq_377717_x2 +TCACCGGGTGGAAACTCGC +>seq_377719_x2 +GCACCGGGAGAAAAACTGGAGT +>seq_377721_x2 +ACCGGGTGAACACTTGTAGT +>seq_377723_x2 +TCGCCGGGTGAACACTTGCAG +>seq_377725_x2 +CCACCGGGAGAAAAACTGGAGT +>seq_377727_x2 +TCACCGGCTGTAAATCAGCTTG +>seq_377729_x2 +TCACCGGGTGATCACTTGCAG +>seq_377731_x2 +CACCGGGTGAAAAATCACCTA +>seq_377733_x2 +TCACCGGGAGAACAACTGGAGT +>seq_377735_x2 +TCACCGGGTGTAGATCAGCTA +>seq_377737_x2 +TCNCCGGGTGTACATCAGCTAA +>seq_377739_x2 +TCACCGGGAGAGAAACTGGAGT +>seq_377741_x2 +TCACCGGGTGTAAATCAGTTTG +>seq_377743_x2 +ACCCGGTGAAAATTCGCATG +>seq_377745_x1 +TCCGGGTGTACATCAGCTAA +>seq_377746_x1 +CACGAAAAGGGGAGCAGAACGA +>seq_377747_x1 +ATCACCGGGTGAACAATTGCAG +>seq_377748_x1 +ATATCACCGGGTGTACATCAGC +>seq_377749_x1 +TCACCGGGTGTACATCAGCTAAGC +>seq_377750_x1 +AGCTGATTTCGTCTTGGTCA +>seq_377751_x1 +TCACCGGGCGTACATCAGC +>seq_377752_x1 +TCACCGGGTGGAAAATAG +>seq_377753_x1 +TCACCGGGTGTAAATCATCTT +>seq_377754_x1 +GGGAGACACGAAAAGGGGA +>seq_377755_x1 +CGGGTGAAAATTCGCATG +>seq_377756_x1 +TCACCGTGTGAAAATTCGCAT +>seq_377757_x1 +TCACCGGGTCAACACTTGCA +>seq_377758_x1 +ACCGGGTGGAAACTAGCCG +>seq_377759_x1 +TCACCGGGTGTACATCAGTT +>seq_377760_x1 +ATCACCGGGTGTACATCAG +>seq_377761_x1 +TCACCGGGTGAAAATTCGC +>seq_377762_x1 +ATCAACGGGTGAACACTTGCAG +>seq_377763_x1 +AGTGGATGTATGCCATTATGATA +>seq_377764_x1 +TACCGGGTGTACATCAGCTAA +>seq_377765_x1 +ACCGGGTGAAAATTCCCATG +>seq_377766_x1 +CAGCTGATTTCGTCTTGGTAAT +>seq_377767_x1 +ACCGGGTGGATACTAGCAGT +>seq_377768_x1 +ACCGGGTGGAAACTAGCAGTG +>seq_377769_x1 +ATCACCGGGAGTACATCAGCTAA +>seq_377770_x1 +TCACCGGGTGTACATCNG +>seq_377771_x1 +TCACCGGGTGTCCATCAGCTA +>seq_377772_x1 +ATCAACGGGTGAACACTTGCAGT +>seq_377773_x1 +TCACCGGGTGAACACTTGCAGTGGA +>seq_377774_x1 +TGTGGGTGTCCGTTGCGGTGTTA +>seq_377775_x1 +ATCACCGGGAGAAAAACTGGAG +>seq_377776_x1 +TCACCGCGTGTAAATCAGCTT +>seq_377777_x1 +TCTCACCGGGTGGAAACTAGCAGT +>seq_377778_x1 +TCACCGGGTGTAAATCGGCTT +>seq_377779_x1 +TCACCGGGTGAACAGTTGCAG +>seq_377780_x1 +TGTTAAGCGTATCTTCTCGAA +>seq_377781_x1 +AGCTGATTTCGTCTTGTTAA +>seq_377782_x1 +ATCACCGGGTGAACACTTGCTGT +>seq_377783_x1 +ATCACCGGCTGAACACTTGCAGT +>seq_377784_x1 +ATCACCGGGTGTACATCATCTAA +>seq_377785_x1 +TCACCGGGTGATAATTCGCA +>seq_377786_x1 +TCACCGGGTGAACACTTGCGG +>seq_377787_x1 +TGTGGGTGTCCGGTGCGGTGCTA +>seq_377788_x1 +TCACCGGGTGAACACTNGCAG +>seq_377789_x1 +ACCGGGTGAACACTTGCATT +>seq_377790_x1 +TCACCGGGTGAAAATTCGTA +>seq_377791_x1 +ACCGGGTGAAAATTCGCATC +>seq_377792_x1 +AGATGATTTCGTCTTGGTAAT +>seq_377793_x1 +ATCACCGGGGGGAAACTAGCAGT +>seq_377794_x1 +TGTGGGTGTCCGTTGTGGTGCTA +>seq_377795_x1 +CACCAGGTGAACACTTGCAGT +>seq_377796_x1 +TAATATCGTCCTTCTTCAT +>seq_377797_x1 +ACCGGGTGGAAACTAGGAGT +>seq_377798_x1 +TCACCGGGAGAAAAANTGGAGT +>seq_377799_x1 +TCACCGGGTGTACATAAGCT +>seq_377800_x1 +ATCACCGGTTGAACACTTGCAGT +>seq_377801_x1 +TGGTTTTTCTCTGCAGTGTTA +>seq_377802_x1 +TCACCGGGTGAACACCTGCA +>seq_377803_x1 +TCACCGGGTGAACAATCACCTA +>seq_377804_x1 +CACCGGATGAACACTTGCAGT +>seq_377805_x1 +ACCCGGTGAACACTTGCAG +>seq_377806_x1 +TCACCGGGTGGACACTAGCAGTG +>seq_377807_x1 +TCACCGGGTGGAAACTAGCAGAGGC +>seq_377808_x1 +TCACCGGGTGTAAATCAGGTTG +>seq_377809_x1 +GAAAAGGGGAGACACGAAAAGG +>seq_377810_x1 +CGGGCGAACACTTGCAGT +>seq_377811_x1 +CCCGGGTGGAAACTAGCAGT +>seq_377812_x1 +TCACCGGGTGTAAAACAGCTT +>seq_377813_x1 +TCACCGGGCGGAAACTAGC +>seq_377814_x1 +ACCGGGTGGAAACTATCAG +>seq_377815_x1 +TCACCGGGAGAAATACTGGAG +>seq_377816_x1 +ACCGGGTGGAAACTAGCAC +>seq_377817_x1 +CTATCACCGGGTGTACATCAGCA +>seq_377818_x1 +CTCACCGGGTGGAAACTAGCA +>seq_377819_x1 +TCACCGGGAGAAAAACTGGAT +>seq_377820_x1 +TCACCAGGTGAAAAATCACCTA +>seq_377821_x1 +TCACCGGGTGAACCCTTGCA +>seq_377822_x1 +TCAACGGGTGAACACTTGCAGTG +>seq_377823_x1 +TCACCGGGTGCACATCAGCT +>seq_377824_x1 +GCACCGGGTGAACACTTGCA +>seq_377825_x1 +CACCGGGTGTAAATCAGCTTT +>seq_377826_x1 +TCACCGGGCGTACATCAGCT +>seq_377827_x1 +CACTGGGTGAAAATTCGCATG +>seq_377828_x1 +ACGAAAAGGAGATCTGGCA +>seq_377829_x1 +TCACCGGGTGATCACTTGCA +>seq_377830_x1 +TCACCGGGTGACCACTTGCA +>seq_377831_x1 +TGTCACCGGGTGTAAATCAGCT +>seq_377832_x1 +CTATCACCGGGTGTACATCAGTT +>seq_377833_x1 +TCACCGGGTGCACATCAGC +>seq_377834_x1 +AAAAGGGGAGCTGGCACTGTG +>seq_377835_x1 +CACCGGGTGAACACNTGCAGT +>seq_377836_x1 +AGTGGATGTATGCCATGTTGATA +>seq_377837_x1 +TGTTGGTGTCCGTTGCGGTGCTA +>seq_377838_x1 +TCACCGGGTGAACACTTNCA +>seq_377839_x1 +NCACCGGGTGGAAACTAGCA +>seq_377840_x1 +CAAAAAGGGGATCTGCGAAT +>seq_377841_x1 +TCACCGGGTGCAAATCAGCTT +>seq_377842_x1 +TCACCGGGAGAAGAACTGGAGT +>seq_377843_x1 +TCACCGGGTGAACACTTNCAGT +>seq_377844_x1 +ATCACCGGGTGAACACTTGCAT +>seq_377845_x1 +TCACCGGGGGTACATCAGC +>seq_377846_x1 +ACCGGGGGTAAATCAGCTTG +>seq_377847_x1 +ACCGGGTGAATACTTGCAGT +>seq_377848_x1 +TCACCGGGTGGAAACTNGCA +>seq_377849_x1 +TCACCGGGTGTAAATCAGCTTGGC +>seq_377850_x1 +TCACCGGNTGAACACTTGCA +>seq_377851_x1 +NCACCGGGTGAAAATTCGCATG +>seq_377852_x1 +AAGCTGATTTCGTCTTGGTAAT +>seq_377853_x1 +TAACCGGGTGAAAAATCACCTA +>seq_377854_x1 +TGGTTTTTCTCTGCAGTGATAGA +>seq_377855_x1 +ATCACCGGGTGAACACTTGCAGA +>seq_377856_x1 +AGCTGATTTCGCCTTGGTAATA +>seq_377857_x1 +CACCGGGTGAACATTTGCAG +>seq_377858_x1 +TCACCGGGTGAACACTTGCAGTCG +>seq_377859_x1 +ACCAGGTGGAAACTAGCAGT +>seq_377860_x1 +ACCGGGTGTATATCAGCTAA +>seq_377861_x1 +CCGGGTGAACACTTGCAG +>seq_377862_x1 +CTATCACCGGGTGTACATCAG +>seq_377863_x1 +AGCTGATTACGTCTTGGTAAT +>seq_377864_x1 +TCACCGGGTGTACTTCAGCTA +>seq_377865_x1 +TCACCGGGTGTACATCAAC +>seq_377866_x1 +AAGGGGATCTGCGAGAAGGGG +>seq_377867_x1 +ACCGGGAGCAAAACTGGAGT +>seq_377868_x1 +TCAACGGGAGAAAAACTGGAGT +>seq_377869_x1 +ACCGGGTGTACATCAGCTAAT +>seq_377870_x1 +CCGGGTGTAAATCAGCTTA +>seq_377871_x1 +TCACCGGGTGAAAAATAACCTA +>seq_377872_x1 +CGGGAGAAAAACTGGAGT +>seq_377873_x1 +ACCGGGTGTAAATCTGCTTG +>seq_377874_x1 +TCACCGGGAAAAAAACTGGAGT +>seq_377875_x1 +TCACCGGGTGGAAATTAG +>seq_377876_x1 +AGCTGTTTTCGTCTTGGTAA +>seq_377877_x1 +TCACCGGGAGAAAAACTG +>seq_377878_x1 +TCACCGGGTCGAAACTAG +>seq_377879_x1 +TCACCGGGTGAAAAACTG +>seq_377880_x1 +TCACCGGGTGTTAATCAGCTTG +>seq_377881_x1 +ACCGGGTGGAAACGAGCAGT +>seq_377882_x1 +TGATGGTTTCTTCCACAGTGGT +>seq_377883_x1 +TTTCTTGTCCAATACATCT +>seq_377884_x1 +TCACCGGGTGTAAATCAGCTTGGCG +>seq_377885_x1 +TCACCGGGTGGACACTAGC +>seq_377886_x1 +TCACCGGGAGAACAACTGGAG +>seq_377887_x1 +ACCGTGTGTACATCAGCTAA +>seq_377888_x1 +GGGATCTGCGGAAAGGGGAGA +>seq_377889_x1 +ACGGGGTGGAAACTAGCAGT +>seq_377890_x1 +CACCGGGTGAAACTTCGCATG +>seq_377891_x1 +TCACCAGGTGAACACTTGCA +>seq_377892_x1 +TCACCGGGAGCAAAACTGGAGTA +>seq_377893_x1 +CGAAAAGGGGATCTGCAAAAAG +>seq_377894_x1 +AGCTGATTTCGTATTGGTAAT +>seq_377895_x1 +ATCACCGGGAGAAAAACTGGAGTAA +>seq_377896_x1 +TCACCGGGTGAACACTTGCAGTGGCC +>seq_377897_x1 +TCACCGGGTGAAGACTTGC +>seq_377898_x1 +TCACCGGGTGGAAACTAGCAGTGACT +>seq_377899_x1 +CACCGGGTGAACACTTGCA +>seq_377900_x1 +CNCCGGGTGAACACTTGCAGT +>seq_377901_x1 +TGACCGGGAGAAAAACTGGAGT +>seq_377902_x1 +AGCTGATTTCGTGTTGGTAATA +>seq_377903_x1 +AGTGGAGCAGAACGAAAA +>seq_377904_x1 +CGCCGGGTGAACACTTGCAGT +>seq_377905_x1 +NCCGGGTGTACATCAGCTAA +>seq_377906_x1 +TCACCGGGAGAAAAACTGGATT +>seq_377907_x1 +TCACCGGGTGAAAATTCGCCT +>seq_377908_x1 +CACCGGGTGGAAACTAGCATT +>seq_377909_x1 +CGAAAAGGGGAGCAGAACGA +>seq_377910_x1 +AAAAAGGGGATCTGTGAAAAGGGGAG +>seq_377911_x1 +TCACCGGGTCTACATCAGCTA +>seq_377912_x1 +TNACCGGGTGAACACTTGCA +>seq_377913_x1 +TCACCGGGTGGAAACTAGCAGTGGA +>seq_377914_x1 +TCACCGGGTGTAAATCAGCCT +>seq_377915_x1 +GAACTATCACCGGGTGGAAACTAGCAG +>seq_377916_x1 +TTCGCAAAAAAAAAAAAC +>seq_377917_x1 +TTCACCGGGTGAACACTTGCAGT +>seq_377918_x1 +TCACCGGGTGAACACTTT +>seq_377919_x1 +AGCTAATTTCGTCTTGGTAATAA +>seq_377920_x1 +TCACCGGGTGTAAATCAGCTAG +>seq_377921_x1 +CGCCGGGTGAACACTTGCAG +>seq_377922_x1 +TCAACGGGTGTACATCAGCTA +>seq_377923_x1 +TCACCGGGTGGAAAATAGCAGTG +>seq_377924_x1 +TCACCGGGAGTAAAACTGGAG +>seq_377925_x1 +CACCGGGTGGAAACTAGAAGT +>seq_377926_x1 +TCACCGGGTGTACATCTGCTA +>seq_377927_x1 +AAAGGGGAGCAGAACGAAAAGGG +>seq_377928_x1 +CACCGGGTGAACACGTGCAGT +>seq_377929_x1 +TCACCGGGTGTAAATAAGC +>seq_377930_x1 +ACCGGATGAACACTTGCAGT +>seq_377931_x1 +TGTGGGTGTCCGTTGCGGTGAT +>seq_377932_x1 +AGCTGCTTTCGTCTTGGTAA +>seq_377933_x1 +CACCTGGTGTACATCAGCTAA +>seq_377934_x1 +TCACCGGGTGAAAATTCACAT +>seq_377935_x1 +AGCTGATTTCGTGTTGGTAATAA +>seq_377936_x1 +CGCCAATTTTCGCTTCAGCGC +>seq_377937_x1 +TCACCGGGTGAAAATTAGCA +>seq_377938_x1 +GGTGGTTTTTCTCTGTAGTGATA +>seq_377939_x1 +ACCGGGTATACATCAGCTAA +>seq_377940_x1 +AGCTGATTTCGTCTTGATAAT +>seq_377941_x1 +TATCACCGGGTGAAAAATCACCT +>seq_377942_x1 +TCACCGGGTGAACATCAGCT +>seq_377943_x1 +CAACGGGTGAACACTTGCAG +>seq_377944_x1 +AACGGGTGGAAACTAGCAG +>seq_377945_x1 +TCACCGGGAGACAAACTGGAGT +>seq_377946_x1 +TCACCGGGTGGAAACGAGCA +>seq_377947_x1 +TCGCCGGGTGGAAACTAGCA +>seq_377948_x1 +TTTCAAAAAAAAAAAAAA +>seq_377949_x1 +TCACCGGGTGAACACGTGCAGTG +>seq_377950_x1 +AGTGGATGTATTCCATGATGATA +>seq_377951_x1 +TCACCGGGGGAACACTTG +>seq_377952_x1 +TCACCGGGTGTAAATTCGCAT +>seq_377953_x1 +TGGTTTTTCTCTGCAGTGATA +>seq_377954_x1 +ATCACCGGGTGAACACTCGCAGT +>seq_377955_x1 +GGGAGCAGAACGAAAAGG +>seq_377956_x1 +TGCTGGTTTCTTCCACAGTGG +>seq_377957_x1 +TCACCGGGTGGGAACTAGC +>seq_377958_x1 +ATCACCGCGTGAACACTTGCAGT +>seq_377959_x1 +TCAACGGGTGGAAACTAG +>seq_377960_x1 +TCACCGGGAGAAACACTGGAGT +>seq_377961_x1 +TTTCAAAAAACAACGTGCG +>seq_377962_x1 +ATCAACGGGTGGAAACTAGCAGT +>seq_377963_x1 +ATGACCGGGTGAACACTTGCAGT +>seq_377964_x1 +CACCGGGTGTACNTCAGCTAA +>seq_377965_x1 +ACCGGGCGAACACTTGCAG +>seq_377966_x1 +CGCCAATTTTCGCTTCAGTTCT +>seq_377967_x1 +TCACCGGGTGTACATCACCTA +>seq_377968_x1 +ATCAACGGGTGTACATCAGCTAA +>seq_377969_x1 +AGTGGATGTATGCCATGAAGATA +>seq_377970_x1 +ATCACCGGGTGGAAACTAGCAGG +>seq_377971_x1 +TCAACGGGTGAACACTTG +>seq_377972_x1 +ACCGGGAGAAAAACGGGAGT +>seq_377973_x1 +CCCGGGTGAACACTTGCAGT +>seq_377974_x1 +TCACCGGGGGGAAACTAG +>seq_377975_x1 +AGGAGATCTGGCACTGTG +>seq_377976_x1 +ACCGGGTGCAAACTAGCAGT +>seq_377977_x1 +TCACCGGGTGAACACTTGCAGGG +>seq_377978_x1 +TCACCCGGTGTAAATCAGCTTG +>seq_377979_x1 +TCACCGGGTGTANATCAGC +>seq_377980_x1 +ACCGGGCGAAAAATCACCTA +>seq_377981_x1 +TCACCGGGTGTATATCAGCT +>seq_377982_x1 +AGTGGATGTATGCTATGATGATA +>seq_377983_x1 +ACCGGNTGGAAACTAGCAGT +>seq_377984_x1 +TCACCGGGTGTACATCATC +>seq_377985_x1 +TCACTGGGTGAAAATTCGCAT +>seq_377986_x1 +ACCGGGTGAACACTTGGAGT +>seq_377987_x1 +AGTGGATGTATGCCATGATGGTA +>seq_377988_x1 +ACCGGGTGGAAACTAGCANT +>seq_377989_x1 +TCACCGGGTGTAAACCAGCTT +>seq_377990_x1 +CCCCGGGTGAACACTTGCAGT +>seq_377991_x1 +CGGGTGAAAAATCACCTA +>seq_377992_x1 +GGGTAGAGGACGACACTGCCA +>seq_377993_x1 +TCACCGGGTGAAAATTCGCAG +>seq_377994_x1 +CACCGGGTGGAAACTAGCA +>seq_377995_x1 +GCACCGGGTGTAAATCAGCTT +>seq_377996_x1 +GGCTAGATCTTTTCCACT +>seq_377997_x1 +ATCACCGGGTGAATACTTGCAG +>seq_377998_x1 +ACCGGTTGAACACTTGCAG +>seq_377999_x1 +ACCGGGTGGAAGCTAGCAGT +>seq_378000_x1 +CTCACCGGGTGTACATCAGCTA +>seq_378001_x1 +ATCACCGGCAGAAAAACTGGAGT +>seq_378002_x1 +ACCGGGTGAACACTTACAGT +>seq_378003_x1 +CACCGGGTGAACACTTGCAGCG +>seq_378004_x1 +ACCGGGTGTACATCATCTAA +>seq_378005_x1 +TCACCGGGTGACCACTTG +>seq_378006_x1 +TCAACGGGTGGAAACTAGC +>seq_378007_x1 +TGAGGGTGTCCGTTGCGGTGCTA +>seq_378008_x1 +TTACCGGGTGAACACTTGCAGTGGT +>seq_378009_x1 +TTCACCGGGTGAAAATTCGCATG +>seq_378010_x1 +GGTGGTTTTTCTGTGCAGTGATAG +>seq_378011_x1 +CCGATCACCGGGTGTACATCAGCT +>seq_378012_x1 +CTCTGTGATCCAGGTCCTGT +>seq_378013_x1 +TCACCGGGTGGAAACTAC +>seq_378014_x1 +TCACCGGGAGAAAAAGTGGAG +>seq_378015_x1 +CTCTACAAGTTGTGATCGTGAG +>seq_378016_x1 +CACCGGGTCAACACTTGCAGT +>seq_378017_x1 +AGCTGCTTTCGTCTTGGTAATA +>seq_378018_x1 +CACCGGGTGAACNCTTGCAGT +>seq_378019_x1 +TCACCGGGTGTAAATTCGCA +>seq_378020_x1 +ACCGGGTGCACATCAGCTAA +>seq_378021_x1 +AACACCGGGTGTACATCAGCTAA +>seq_378022_x1 +ACCGGGAGAAAAACTGGAGC +>seq_378023_x1 +AGCTGATTTCGTCTTGGTTAT +>seq_378024_x1 +AACGGGTGTAAATCAGCTTG +>seq_378025_x1 +TCACCGGGTTGAAACTAGCAGTG +>seq_378026_x1 +ACCGGGTGAACACTTGCAGTTG +>seq_378027_x1 +GTTGTGATCGTGAGGCCCCTTC +>seq_378028_x1 +TCACCGCGTGAAAATTCGCAT +>seq_378029_x1 +GGCTGGATTTTGTAAGCT +>seq_378030_x1 +CACCGGGTGAACACTGGCAGT +>seq_378031_x1 +AGCTCGTCATTGAGATTA +>seq_378032_x1 +TCACCGGGAGAAATACTGGAGT +>seq_378033_x1 +TCAACGGGTGAAAATTCGCAT +>seq_378034_x1 +TCACCGGGTGCACACTTGCA +>seq_378035_x1 +CCATCACCGGGTGTACATCAGCTAA +>seq_378036_x1 +TCACCCGGTGAACACTTGCAG +>seq_378037_x1 +ATCACCGAGTGAACACTTGCAGT +>seq_378038_x1 +TGTGGGTGTCAGTTGCGGTGCTA +>seq_378039_x1 +TCACCGGGTGTACATCAGCTAAGGC +>seq_378040_x1 +TCACCGGGNGTACATCAGCTAA +>seq_378041_x1 +TCACCGGGAGAAAATCTGGAGT +>seq_378042_x1 +CGCCAATTTTCGCTTCAGGGCTA +>seq_378043_x1 +GAAAAGGGGAGCAGAACGAAGA +>seq_378044_x1 +TCACCGGGTGTACAGCAGCTA +>seq_378045_x1 +ACCGGGTGAAAAATCGCATG +>seq_378046_x1 +ATCACCGGGTGAACACGTGCA +>seq_378047_x1 +TCACCGGGTGTAAATGAGCTTG +>seq_378048_x1 +TCACCGGATGTACATCAGCTA +>seq_378049_x1 +TCACCGGNTGAAAATTCGCATG +>seq_378050_x1 +TNACCGGGTGGAAACTAGCA +>seq_378051_x1 +ATCACCGGGTGGAAAATAGCAGT +>seq_378052_x1 +AGCGGGTGAACACTTGCAG +>seq_378053_x1 +ACGAAAAGGGGAGCAGAACGA +>seq_378054_x1 +GGTGGTTTTTCTCTGCAGTGATT +>seq_378055_x1 +CGGGAGAAAAACTGGAGTT +>seq_378056_x1 +TCACCGGGTGGGAACTAGCA +>seq_378057_x1 +TGCGCCTTTGAAGAGTACTGTA +>seq_378058_x1 +TCACCGGGTGAAAATTCGCAGGG +>seq_378059_x1 +TCACCGGGAGATAAACTGGAGT +>seq_378060_x1 +TATCACCGGGTGAACACTTGCAGT +>seq_378061_x1 +TGACCGGGTGTAAATCAGCTT +>seq_378062_x1 +AGTGGATGTATGCCATGATGCTA +>seq_378063_x1 +TCACCGGGAGAAAAACTGGAGAA +>seq_378064_x1 +GGTGGTTTTTCTCTGCAGTGATAG +>seq_378065_x1 +TCACCGGGTGAAAATTCGCATGGC +>seq_378066_x1 +GGTGGTTTTTCTCTGCAGCGATA +>seq_378067_x1 +ATCACCGGATGAACACTTGCAGT +>seq_378068_x1 +TCACCGGGTGAACACTTGCAGTGGTCA +>seq_378069_x1 +TGACCGGGTGAAAATTCGCAT +>seq_378070_x1 +AATCACCGGGTGGAAACTAGC +>seq_378071_x1 +TAAGCGTCGCGTGTTGTTAAG +>seq_378072_x1 +TCANCGGGTGGAAACTAGCAG +>seq_378073_x1 +ACCGGGTGGAAACTTGCAGT +>seq_378074_x1 +TCACCGGGTGAANACTTGCA +>seq_378075_x1 +TCACCGGGAGAAAAACTGGAGTG +>seq_378076_x1 +ACCGGGTGAACACCTGCAGT +>seq_378077_x1 +AGCTGACTTCGTCTTGGTAATA +>seq_378078_x1 +TCACCGGGTGGAAACTAGCAGTGGT +>seq_378079_x1 +ATCACCGGGTGGAAACTAGCAGTA +>seq_378080_x1 +TCACCGGGTGGACACTTGCA +>seq_378081_x1 +TCACCGGGTGAACACTTGCAGTAG +>seq_378082_x1 +CTCACCGGGTGTAAATCAGCTTG +>seq_378083_x1 +CCGGGTGAAAAATCACCTA +>seq_378084_x1 +AACTGATTTCGTCTTGGTAATA +>seq_378085_x1 +TCACCCGGAGAAAAACTGGAGT +>seq_378086_x1 +TCACCAGGAGAAAAACTGGAGT +>seq_378087_x1 +TCACCGGGNGGAAACTAGCA +>seq_378088_x1 +TCACCGGGTGAAAATTCNCATG +>seq_378089_x1 +GGGAGCAGAACGAAAAGGG +>seq_378090_x1 +TGTGGGTGTCCGTTGAGGTGCT +>seq_378091_x1 +TCACCGAGTGAAAAATCACCTA +>seq_378092_x1 +AGGGGAGCAGAGCGAAAAG +>seq_378093_x1 +TCACCGGGTGGAAACTAGCAGTGG +>seq_378094_x1 +ACCGGGAGAAAATTCGCATG +>seq_378095_x1 +ACACCGGGTGAACACTTG +>seq_378096_x1 +CTATCACCGGGTGTACAGCAGCT +>seq_378097_x1 +CCACCGGGTGTACATCAGCTA +>seq_378098_x1 +TCACCGGGTGAAAATTCTCAT +>seq_378099_x1 +GAAAAAAAAACCAAAAAA +>seq_378100_x1 +ACAAGTTGTGATCGTGATGCC +>seq_378101_x1 +ACCGGGTGAAGACTTGCAGT +>seq_378102_x1 +ACCGGGAGAACACTTGCAG +>seq_378103_x1 +TCNCCGGGTGAACACTTGCAG +>seq_378104_x1 +AGTGGATGTTTGCCATGATGATA +>seq_378105_x1 +TGTGGGTGTCCGTTGCGG +>seq_378106_x1 +TCACCGGGTGAAAACTTG +>seq_378107_x1 +TTACCGGGTGGAAACTAGCA +>seq_378108_x1 +ATCACCGGGGGAAAAATCACCTA +>seq_378109_x1 +GCACCGGGTGGAAACTAGCAGTG +>seq_378110_x1 +TCACTGGGTGTACATCAGC +>seq_378111_x1 +CACCGGGTGAACACTAGCAGT +>seq_378112_x1 +TCACCGGGTGGANACTAG +>seq_378113_x1 +TCACCGGGTGGAAACTAGCAGTGGAT +>seq_378114_x1 +ACCGGGTGGAAGCTAGCA +>seq_378115_x1 +ATCACCGGGTGGAAACTAGCA +>seq_378116_x1 +ACGGGTGGAAACTAGCAGT +>seq_378117_x1 +AGCTGATTTCGACTTGGTAATA +>seq_378118_x1 +TAACCGGGTGAACACTTGCAGTG +>seq_378119_x1 +ACCGGGTGAAAATTCGCACG +>seq_378120_x1 +TCACCGGGTGTAAATCAGCG +>seq_378121_x1 +ACCGGGCGAAAATTCGCATG +>seq_378122_x1 +TGACCGGGAGAAAAACTGGAGTA +>seq_378123_x1 +TTACCGGGTGAAAAATCACCTA +>seq_378124_x1 +CCACCGGGTGGAAACTAGC +>seq_378125_x1 +TCACCGGGTGTACTTCAGCT +>seq_378126_x1 +AGTGGATGTATGCCATGATGATG +>seq_378127_x1 +TCACCGGGTGTAAATCAGCCTG +>seq_378128_x1 +TCACCGGGTGGAATCTAGCA +>seq_378129_x1 +TCACCGGGTGTACATCAGCTAAAG +>seq_378130_x1 +ATCACCGGGAGTAAAACTGGAGT +>seq_378131_x1 +GGTGGTTTTTCTCTGCAGTGATAT +>seq_378132_x1 +TCACGGGGTGAACACTTGCAG +>seq_378133_x1 +TCACCGGGTGGAAACTAGCAGTCGC +>seq_378134_x1 +GGGATCTGGCACCGTGCC +>seq_378135_x1 +TCACCGGGTGGAAACTAGCAGAGG +>seq_378136_x1 +TGCGCCTTTAAAGAGTACTGTA +>seq_378137_x1 +AGCTGATTTCATCTTGGTAATA +>seq_378138_x1 +TCACCGGGTGCAAAATCACCTA +>seq_378139_x1 +ACCGGGTGTACATCAGCCAA +>seq_378140_x1 +TCACCGGGTCGAAACTAGCAGTG +>seq_378141_x1 +TCACCGGNTGAACACTTGCAG +>seq_378142_x1 +AGCACCGGGTGTACATCAGCTAA +>seq_378143_x1 +CGAAAAGGGGAGCAACGAAAAGG +>seq_378144_x1 +ATCAACGGGTGAAAATTCGCATG +>seq_378145_x1 +ACCGGGTGAAAATTCGCA +>seq_378146_x1 +ACCGGGTGGAGACTAGCAG +>seq_378147_x1 +GGCTTTGAAGAGTACTGTAATTT +>seq_378148_x1 +TCACCGGGTGTACGTCAGCTA +>seq_378149_x1 +TAACCGGGTGTACATCAGCTA +>seq_378150_x1 +ACCGGGTGGAACCTAGCAGT +>seq_378151_x1 +GGTGGTTTTTCTCTTCAGTGA +>seq_378152_x1 +ACCGGGTGAACATTTGCAGT +>seq_378153_x1 +AGCAGAACGAAAAGGGGGTCTG +>seq_378154_x1 +TGTGGGTGTCCGTTGCGGTGC +>seq_378155_x1 +TCACCGGGTGCAAACTAGC +>seq_378156_x1 +ACCGGGTGAACGCTTGCAGT +>seq_378157_x1 +TCACCGGGAGAAAAACTGGAGTTG +>seq_378158_x1 +CGAAAAGGGGAGCAACGAAAA +>seq_378159_x1 +ACTGGGTGAAAATTCGCATG +>seq_378160_x1 +ACCGGGTGGAAACTGGCAGT +>seq_378161_x1 +CACGGGGTGAACACTTGCAGT +>seq_378162_x1 +TCACCGGGGGAAAAACTGGAGT +>seq_378163_x1 +ACCTGGTGGAAACTAGCAGT +>seq_378164_x1 +CACCGGGTGAACAATTGCAGT +>seq_378165_x1 +ATCACCGGGTGANCACTTGCAGT +>seq_378166_x1 +TCACCGGGTGTACATCAGCCA +>seq_378167_x1 +TCACCGGGTGGAAACTAGCAGTCGCTC +>seq_378168_x1 +TCATCGGGTGGAAACTAG +>seq_378169_x1 +ATCACCCGGTGTACATCAGCTAA +>seq_378170_x1 +CGCCAATTTTCGCTTCAGCGCTA +>seq_378171_x1 +TCACCGGGAGAATAACTGGAG +>seq_378172_x1 +TCACCGGNTGTAAATCAGCTTG +>seq_378173_x1 +GTGGATGTATGCCATGATGATAAGA +>seq_378174_x1 +TCACCGGGAGAAAAACTGGGGT +>seq_378175_x1 +TCACCGGGTGGAAACTAGCAGTGGTTC +>seq_378176_x1 +CGAAAAGGGGATCTGCAAAAATG +>seq_378177_x1 +ATCACCGGGTGAACACTGGCAGT +>seq_378178_x1 +CGGGTGGAAACTAGAAGT +>seq_378179_x1 +ACCGGGTGTAAATCAGCTNG +>seq_378180_x1 +CACCGGGTGGAAACTAGCGGT +>seq_378181_x1 +ACACCGGGTGTAAATCAGCTTG +>seq_378182_x1 +GGTATCACCGGGTGAACACTTGCAGT +>seq_378183_x1 +TCACCGGGTGTANATCAGCT +>seq_378184_x1 +ACCGGGTGAACACTTGCTGT +>seq_378185_x1 +TGTGGGTGTCCGTTGCTGTG +>seq_378186_x1 +TCANCGGGTGTAAATCAGCTTG +>seq_378187_x1 +GGGGATCTGCAAAAAGGG +>seq_378188_x1 +ACCGGGCGAACACTTGCA +>seq_378189_x1 +CACCGGGTGGGAACTAGCAG +>seq_378190_x1 +TCACCGGGTCGAAACTAGCA +>seq_378191_x1 +AGCGGGTGGAAACTAGCAGT +>seq_378192_x1 +TCACCGGGCGAAAATTCGCA +>seq_378193_x1 +TCACCGGGTGTACAGCAGCT +>seq_378194_x1 +TCACCGGGTGGAAACTAGCAGTGGCT +>seq_378195_x1 +CACCGGGTGAACACTTGCAGTGT +>seq_378196_x1 +ATCACCGGGAGAACAACTGGAGT +>seq_378197_x1 +CTATCACCGGGCGAAAATTCGCA +>seq_378198_x1 +TCACCGGGTGTACATCAGGTA +>seq_378199_x1 +CCACCGGGTGGAAACTAGCAGTGG +>seq_378200_x1 +TGTGGGTGTCCGTTGCGGTGCGA +>seq_378201_x1 +ATCGGGTGAACACTTGCAGT +>seq_378202_x1 +AGCTGATTTCTTCTTGGTAATA +>seq_378203_x1 +GAAAAGCGGAGCAGAACGAAAA +>seq_378204_x1 +GGGGAGCAGAACGAAAAGGGG +>seq_378205_x1 +TCACCGGGTGAACACTTGTA +>seq_378206_x1 +ACCGGGTGTACAGCAGCTAA +>seq_378207_x1 +TCACCGGGTGGAAANTAGCAG +>seq_378208_x1 +TCACCGGGAGAAAAACAGGAG +>seq_378209_x1 +ACCGGGAGAAAAACTGGAGA +>seq_378210_x1 +TATCACCGGGTGAACACTTGCA +>seq_378211_x1 +TCACCGGGTGGNAACTAGCAGT +>seq_378212_x1 +TCACCGGGTGGAAACTAGCAATG +>seq_378213_x1 +ACCGGGTGGAAACTAACAG +>seq_378214_x1 +CACCGGGTGACCACTTGCAGT +>seq_378215_x1 +TCACCGGGAGAAAAACTGNAGT +>seq_378216_x1 +CGAAAAGGAGATCTGGCAC +>seq_378217_x1 +TCACCGGGGGTACATCAGCT +>seq_378218_x1 +TCACCGGGTGGAAACTAGCAGCG +>seq_378219_x1 +ACCGGGTGTAAATCAGCTTGTC +>seq_378220_x1 +ACCGGGTGAACACATGCA +>seq_378221_x1 +TCACCGGGTGTACCTCAGC +>seq_378222_x1 +TCACCGGGCGGAAACTAGCAGTG +>seq_378223_x1 +TCACCGGGTATACATCAGCTA +>seq_378224_x1 +ACAGGGTGTACATCAGCTAA +>seq_378225_x1 +TCANCGGGTGTACATCAGCTA +>seq_378226_x1 +TCACCCGGTGGAAACTAG +>seq_378227_x1 +NCACCGGGTGTACATCAGCTA +>seq_378228_x1 +AGCTGATTTCGTCTTGGTAATAC +>seq_378229_x1 +TCTCACCGGGTGAAAATTCGCATG +>seq_378230_x1 +ATCACCGGGTGAACACTTGCGGT +>seq_378231_x1 +TCACCGGGTGTACATCAGGT +>seq_378232_x1 +TGTGGGTCTCCGTTGCGGTGCTA +>seq_378233_x1 +TCCGGGTGAACACTTGCAGT +>seq_378234_x1 +TCACCGGGTTTAAATCAGCTTG +>seq_378235_x1 +TCACCAGGTGTACATCAGCTA +>seq_378236_x1 +CTTAGTCAATTCCTCAAC +>seq_378237_x1 +ACCGGGTGCACACTTGCAGT +>seq_378238_x1 +TCACCGGGTGAACACTCGCA +>seq_378239_x1 +GAAAAGGGGAGCAGAACGAAAAT +>seq_378240_x1 +TCACCGGGTGTACATGAGCTA +>seq_378241_x1 +TCGGGTGAACACTTGCAG +>seq_378242_x1 +TCACCGGGATAAAAACTGGAGT +>seq_378243_x1 +TCACCGGGTGAAAGATCACCTA +>seq_378244_x1 +ACCGCGTGTACATCAGCTAA +>seq_378245_x1 +AAGAGAATAGAACCGACGATAT +>seq_378246_x1 +TCACCGGGTGAACACTTGCAGTGTT +>seq_378247_x1 +ACCGGGTGGAAACTAGCAAT +>seq_378248_x1 +TAACCGGGTGTAAATCAGCTTG +>seq_378249_x1 +TCACCGGGTGAAAAATCATCTA +>seq_378250_x1 +CACCGGGTGAACACTTGCAGTTG +>seq_378251_x1 +ACCGGGTGGAAACTAGTAGT +>seq_378252_x1 +TCACCGGGTGCAAACTAGCAGTG +>seq_378253_x1 +TCACCGGGAGAAAAAGTGGAGT +>seq_378254_x1 +GCCACTTTTCGCTTCAGTGCTA +>seq_378255_x1 +ACCGGATGAAAATTCGCATG +>seq_378256_x1 +TCACCGGGTGTAAATCAACT +>seq_378257_x1 +GCCAATTTTCGCTTCAATGCTA +>seq_378258_x1 +CAGGGTGTACATCAGCTAA +>seq_378259_x1 +TCACCGGGAGTACATCAGCTAAG +>seq_378260_x1 +TCACCGGGTGTAAATTAGCTT +>seq_378261_x1 +TCACCGGGTGAACACTTGCAGTGGT +>seq_378262_x1 +TCACCGGGTGTATATCAGCTTG +>seq_378263_x1 +CACCGGGTGAAGACTTGCAGT +>seq_378264_x1 +ACCGAGTGAAAATTCGCATG +>seq_378265_x1 +ATCACCGGGTGAACCCTTGCAGT +>seq_378266_x1 +GGTGGTCTTTCTCTGCAGTGATA +>seq_378267_x1 +ACCGGGTGTACATCAGCTAC +>seq_378268_x1 +TCACCGGGACAAAAACTGGAGT +>seq_378269_x1 +TCACCGGGTGAAGATTCGCAT +>seq_378270_x1 +ACACCGGGTGAACACTTGCA +>seq_378271_x1 +TAACCGGGTGAAAATTCGCAT +>seq_378272_x1 +ACCGAGTGGAAACTAGCAG +>seq_378273_x1 +TGTGGGTGTCCGTTGCGGTG +>seq_378274_x1 +TCACCTGGTGTACATCAGCT +>seq_378275_x1 +AGCCGATTTCGTCTTGGTAATA +>seq_378276_x1 +TCACCGGGTGAACACTTGCAGTTG +>seq_378277_x1 +TCACCGGGAGAAAAATTGGAG +>seq_378278_x1 +ATCACCGGGTGTACATCACCTA +>seq_378279_x1 +TCAGCGGGTGTACATCAGCTA +>seq_378280_x1 +ATCACCGGGTAAAAAATCACCT +>seq_378281_x1 +GAAAAGTGGAGCAGAACGAAA +>seq_378282_x1 +ACCGGGAGGAAAACTGGAGT +>seq_378283_x1 +GGGGGTTTTTCTCTGCAGTGATA +>seq_378284_x1 +TCACCGGGTGAACAGTTGC +>seq_378285_x1 +AACGAAAAGGGGATCTGGCACT +>seq_378286_x1 +TGTGGGGGTCCGTTGCGGT +>seq_378287_x1 +TCACCGGGTGGACATCAGC +>seq_378288_x1 +ATCACCGGGGGAACACTTGCAG +>seq_378289_x1 +ACCGGGTGAACACCTGCAG +>seq_378290_x1 +AGCTGATTTCGTCTTGGTAGTA +>seq_378291_x1 +TCACCGGGTGTACATCAGCTAAGG +>seq_378292_x1 +ACCGGGCGTAAATCAGCTTG +>seq_378293_x1 +GTTTTGATCGTGAGGCCCCTTC +>seq_378294_x1 +ACCGGGTGGGAACTAGCA +>seq_378295_x1 +TCACCGTGTGAACACTTG +>seq_378296_x1 +TCACCGGTTGTACATCAG +>seq_378297_x1 +TCACCGGGAGTAAATCAGCTT +>seq_378298_x1 +ACCGGGTGAACACTTGCCG +>seq_378299_x1 +TCACCGGGTGAACGCTTGCA +>seq_378300_x1 +CCCCGGGTGGAAACTAGCAGT +>seq_378301_x1 +TCACCGGGCGTAAATCAGCTT +>seq_378302_x1 +CGACAATTTTCGCTTCAGTGCTA +>seq_378303_x1 +CACCGGGTGAACACTTGCAGTGC +>seq_378304_x1 +ACGGTATCCGGTCTCGACA +>seq_378305_x1 +TCAACGGGAGAAAAACTGGAG +>seq_378306_x1 +ACGGGGTGTACATCAGCTAA +>seq_378307_x1 +ACCGGCTGAACACTTGCAGT +>seq_378308_x1 +TCATCGGGAGAAAAACTGGAGT +>seq_378309_x1 +TCACCGGGTGAACACTTACAG +>seq_378310_x1 +TCACCGGGTGTACATCAGCTG +>seq_378311_x1 +CCGGGTGTACATCAGCTA +>seq_378312_x1 +AGTGTGGGTGTCCGTTGCGGTGCTA +>seq_378313_x1 +AATCACCGGGTGGAAACTAG +>seq_378314_x1 +ACCGGGTGGAAACAAGCAGT +>seq_378315_x1 +TGTGGGTGTCCGTTGCGGCGCTA +>seq_378316_x1 +CACCGGGTGTACATCACCTAA +>seq_378317_x1 +TAACCGGGTGAACACTTG +>seq_378318_x1 +ACCGGGAGAAAAACTGAAGT +>seq_378319_x1 +TCACCGGGTGGAAACTAGNAGTG +>seq_378320_x1 +ATCACCGGGTGAAAAATCACAT +>seq_378321_x1 +TCACCCGGTGAACACTTGCA +>seq_378322_x1 +TGTGGGTGTCCGTTGCGGTGATA +>seq_378323_x1 +ATCACCGGGTGGAAACTAGAAGT +>seq_378324_x1 +TCACCGGGTGTACACCAGCT +>seq_378325_x1 +ACCGGGTGGGAACTAGCAG +>seq_378326_x1 +TCACCGGGTGAAAACTAGC +>seq_378327_x1 +TCACCGGGTGAACACTTGAA +>seq_378328_x1 +TCAGCGGGTGTAAATCAGC +>seq_378329_x1 +CCGGGTGGAAACTAGCAGTGGCT +>seq_378330_x1 +AGTGGTTGTATGCCATGATGATA +>seq_378331_x1 +NCACCGGGTGGAAACTAGCAG +>seq_378332_x1 +TCACCGGGTGTAAATCATC
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/reads_collapsed_vs_genome.arf Mon Jan 26 09:56:49 2015 -0500 @@ -0,0 +1,481 @@ +seq_0_x149538 22 1 22 tcaccgggtggaaactagcagt chrII:11534525-11540624 22 3060 3081 tcaccgggtggaaactagcagt + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_149538_x90904 22 1 22 tcaccgggtgaacacttgcagt chrII:11534525-11540624 22 3285 3306 tcaccgggtgaacacttgcagt + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_240442_x25577 22 1 22 tcaccgggtgtacatcagctaa chrII:11534525-11540624 22 3631 3652 tcaccgggtgtacatcagctaa + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_266019_x11571 22 1 22 tcaccgggtgaaaattcgcatg chrII:11534525-11540624 22 3165 3186 tcaccgggtgaaaattcgcatg + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_277590_x9943 21 1 21 tcaccgggtggaaactagcag chrII:11534525-11540624 21 3060 3080 tcaccgggtggaaactagcag + 0 mmmmmmmmmmmmmmmmmmmmm +seq_287533_x5429 22 1 22 tcaccgggtggaaactagcagt chrII:11534525-11540624 22 3060 3081 tcaccgggtggaaactagcagt + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_292962_x4000 26 1 26 aatgacactggttatcttttccatcg chrIII:2172325-2172669 26 123 148 aatgacactggttatcttttccatcg + 0 mmmmmmmmmmmmmmmmmmmmmmmmmm +seq_296962_x3796 21 1 21 tcaccgggtgaacacttgcag chrII:11534525-11540624 21 3285 3305 tcaccgggtgaacacttgcag + 0 mmmmmmmmmmmmmmmmmmmmm +seq_300758_x2851 22 1 22 tcaccgggtgaacacttgcagt chrII:11534525-11540624 22 3285 3306 tcaccgggtgaacacttgcagt + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_309210_x2159 22 1 22 tcaccgggtggaaactagcagt chrII:11534525-11540624 22 3060 3081 tcaccgggtggaaactagcagt + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_311369_x2128 22 1 22 tcaccgggtgtaaatcagcttg chrII:11534525-11540624 22 3535 3556 tcaccgggtgtaaatcagcttg + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_313497_x2021 20 1 20 tcaccgggtggaaactagca chrII:11534525-11540624 20 3060 3079 tcaccgggtggaaactagca + 0 mmmmmmmmmmmmmmmmmmmm +seq_320610_x1349 22 1 22 tcaccgggagaaaaactggagt chrII:11534525-11540624 22 3382 3403 tcaccgggagaaaaactggagt + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_325900_x1251 22 1 22 tcaccgggtgaacacttgcagt chrII:11534525-11540624 22 3285 3306 tcaccgggtgaacacttgcagt + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_327151_x1237 20 1 20 tcaccgggtgaacacttgca chrII:11534525-11540624 20 3285 3304 tcaccgggtgaacacttgca + 0 mmmmmmmmmmmmmmmmmmmm +seq_328388_x1017 21 1 21 tcaccgggtgtacatcagcta chrII:11534525-11540624 21 3631 3651 tcaccgggtgtacatcagcta + 0 mmmmmmmmmmmmmmmmmmmmm +seq_329405_x990 20 1 20 accgggtggaaactagcagt chrII:11534525-11540624 20 3062 3081 accgggtggaaactagcagt + 0 mmmmmmmmmmmmmmmmmmmm +seq_333757_x746 20 1 20 accgggtgaacacttgcagt chrII:11534525-11540624 20 3287 3306 accgggtgaacacttgcagt + 0 mmmmmmmmmmmmmmmmmmmm +seq_334503_x690 21 1 21 tcaccgggtggaaactagcag chrII:11534525-11540624 21 3060 3080 tcaccgggtggaaactagcag + 0 mmmmmmmmmmmmmmmmmmmmm +seq_336553_x669 21 1 21 tcaccgggtggaaactagcag chrII:11534525-11540624 21 3060 3080 tcaccgggtggaaactagcag + 0 mmmmmmmmmmmmmmmmmmmmm +seq_337222_x632 22 1 22 agctgatttcgtcttggtaata chrII:11534525-11540624 22 3495 3516 agctgatttcgtcttggtaata + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_339056_x557 21 1 21 tcaccgggtggaaactagcag chrII:11534525-11540624 21 3060 3080 tcaccgggtggaaactagcag + 0 mmmmmmmmmmmmmmmmmmmmm +seq_339613_x541 22 1 22 tcaccgggtgtacatcagctaa chrII:11534525-11540624 22 3631 3652 tcaccgggtgtacatcagctaa + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_342045_x391 22 1 22 tcaccgggtgaacacttgccgt chrII:11534525-11540624 22 3285 3306 tcaccgggtgaacacttgcagt + 1 mmmmmmmmmmmmmmmmmmmMmm +seq_343569_x355 22 1 22 tcaccgggtgtacatcagctaa chrII:11534525-11540624 22 3631 3652 tcaccgggtgtacatcagctaa + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_344961_x338 21 1 21 tcaccgggtgtacatcagcta chrII:11534525-11540624 21 3631 3651 tcaccgggtgtacatcagcta + 0 mmmmmmmmmmmmmmmmmmmmm +seq_345299_x327 22 1 22 tcaccgggtgaacacttgctgt chrII:11534525-11540624 22 3285 3306 tcaccgggtgaacacttgcagt + 1 mmmmmmmmmmmmmmmmmmmMmm +seq_345948_x316 21 1 21 tcaccgggtgaaaattcgcat chrII:11534525-11540624 21 3165 3185 tcaccgggtgaaaattcgcat + 0 mmmmmmmmmmmmmmmmmmmmm +seq_346264_x309 22 1 22 tcaccgggtggaaactagccgt chrII:11534525-11540624 22 3060 3081 tcaccgggtggaaactagcagt + 1 mmmmmmmmmmmmmmmmmmmMmm +seq_346877_x304 22 1 22 tcaccgggtggaaactagctgt chrII:11534525-11540624 22 3060 3081 tcaccgggtggaaactagcagt + 1 mmmmmmmmmmmmmmmmmmmMmm +seq_348053_x285 21 1 21 caccgggtgaacacttgcagt chrII:11534525-11540624 21 3286 3306 caccgggtgaacacttgcagt + 0 mmmmmmmmmmmmmmmmmmmmm +seq_348338_x283 22 1 22 tcaccgggtggaaactagtagt chrII:11534525-11540624 22 3060 3081 tcaccgggtggaaactagcagt + 1 mmmmmmmmmmmmmmmmmmMmmm +seq_349174_x270 21 1 21 tcaccgggtgaacacttgcag chrII:11534525-11540624 21 3285 3305 tcaccgggtgaacacttgcag + 0 mmmmmmmmmmmmmmmmmmmmm +seq_350773_x263 22 1 22 tcaccgggtggaaactagaagt chrII:11534525-11540624 22 3060 3081 tcaccgggtggaaactagcagt + 1 mmmmmmmmmmmmmmmmmmMmmm +seq_351534_x242 21 1 21 tcaccgggtgaacacttgcag chrII:11534525-11540624 21 3285 3305 tcaccgggtgaacacttgcag + 0 mmmmmmmmmmmmmmmmmmmmm +seq_351776_x240 20 1 20 accgggtgtacatcagctaa chrII:11534525-11540624 20 3633 3652 accgggtgtacatcagctaa + 0 mmmmmmmmmmmmmmmmmmmm +seq_352016_x236 22 1 22 tcaccgggtggaaactagnagt chrII:11534525-11540624 22 3060 3081 tcaccgggtggaaactagcagt + 1 mmmmmmmmmmmmmmmmmmMmmm +seq_352252_x230 22 1 22 tcaccgggagaaaaactggagt chrII:11534525-11540624 22 3382 3403 tcaccgggagaaaaactggagt + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_352482_x229 21 1 21 tcaccgggtgaaaattcgcat chrII:11534525-11540624 21 3165 3185 tcaccgggtgaaaattcgcat + 0 mmmmmmmmmmmmmmmmmmmmm +seq_353384_x221 21 1 21 caccgggtgaacacttgcagt chrII:11534525-11540624 21 3286 3306 caccgggtgaacacttgcagt + 0 mmmmmmmmmmmmmmmmmmmmm +seq_353824_x217 22 1 22 tcaccgggtggaaactagcatt chrII:11534525-11540624 22 3060 3081 tcaccgggtggaaactagcagt + 1 mmmmmmmmmmmmmmmmmmmmMm +seq_354255_x214 21 1 21 tcaccgggtgtaaatcagctt chrII:11534525-11540624 21 3535 3555 tcaccgggtgtaaatcagctt + 0 mmmmmmmmmmmmmmmmmmmmm +seq_357284_x187 21 1 21 tcaccgggtgaacacttgcag chrII:11534525-11540624 21 3285 3305 tcaccgggtgaacacttgcag + 0 mmmmmmmmmmmmmmmmmmmmm +seq_357837_x183 20 1 20 tcaccgggtgtacatcagct chrII:11534525-11540624 20 3631 3650 tcaccgggtgtacatcagct + 0 mmmmmmmmmmmmmmmmmmmm +seq_358198_x178 22 1 22 tcaccgggtggaaactagcact chrII:11534525-11540624 22 3060 3081 tcaccgggtggaaactagcagt + 1 mmmmmmmmmmmmmmmmmmmmMm +seq_358376_x178 23 1 23 atcaccgggtgaacacttgcagt chrII:11534525-11540624 23 3284 3306 atcaccgggtgaacacttgcagt + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_360693_x155 22 1 22 tcaccgggtgaacacttgnagt chrII:11534525-11540624 22 3285 3306 tcaccgggtgaacacttgcagt + 1 mmmmmmmmmmmmmmmmmmMmmm +seq_361587_x144 21 1 21 tcaccgggagaaaaactggag chrII:11534525-11540624 21 3382 3402 tcaccgggagaaaaactggag + 0 mmmmmmmmmmmmmmmmmmmmm +seq_361874_x141 21 1 21 caccgggtgaacacttgcagt chrII:11534525-11540624 21 3286 3306 caccgggtgaacacttgcagt + 0 mmmmmmmmmmmmmmmmmmmmm +seq_362156_x140 22 1 22 tcaccgggtgaacacttgcact chrII:11534525-11540624 22 3285 3306 tcaccgggtgaacacttgcagt + 1 mmmmmmmmmmmmmmmmmmmmMm +seq_362296_x138 22 1 22 tcaccgggtgaacacttgcatt chrII:11534525-11540624 22 3285 3306 tcaccgggtgaacacttgcagt + 1 mmmmmmmmmmmmmmmmmmmmMm +seq_362569_x133 22 1 22 tcaccgggtgaacacttgtagt chrII:11534525-11540624 22 3285 3306 tcaccgggtgaacacttgcagt + 1 mmmmmmmmmmmmmmmmmmMmmm +seq_362702_x132 20 1 20 tcaccgggtggaaactagca chrII:11534525-11540624 20 3060 3079 tcaccgggtggaaactagca + 0 mmmmmmmmmmmmmmmmmmmm +seq_362834_x132 22 1 22 tcaccgggtggaaactagcaat chrII:11534525-11540624 22 3060 3081 tcaccgggtggaaactagcagt + 1 mmmmmmmmmmmmmmmmmmmmMm +seq_363229_x131 19 1 19 tcaccgggtggaaactagc chrII:11534525-11540624 19 3060 3078 tcaccgggtggaaactagc + 0 mmmmmmmmmmmmmmmmmmm +seq_365235_x104 20 1 20 accgggtgaaaattcgcatg chrII:11534525-11540624 20 3167 3186 accgggtgaaaattcgcatg + 0 mmmmmmmmmmmmmmmmmmmm +seq_365339_x104 22 1 22 tcaccgggtgaacacttgaagt chrII:11534525-11540624 22 3285 3306 tcaccgggtgaacacttgcagt + 1 mmmmmmmmmmmmmmmmmmMmmm +seq_365546_x102 21 1 21 caccgggtggaaactagcagt chrII:11534525-11540624 21 3061 3081 caccgggtggaaactagcagt + 0 mmmmmmmmmmmmmmmmmmmmm +seq_366797_x89 21 1 21 tcaccgggtgtacatcagcta chrII:11534525-11540624 21 3631 3651 tcaccgggtgtacatcagcta + 0 mmmmmmmmmmmmmmmmmmmmm +seq_366886_x88 18 1 18 tcaccgggtggaaactag chrII:11534525-11540624 18 3060 3077 tcaccgggtggaaactag + 0 mmmmmmmmmmmmmmmmmm +seq_366974_x88 21 1 21 tcaccgggtgtaaatcagctt chrII:11534525-11540624 21 3535 3555 tcaccgggtgtaaatcagctt + 0 mmmmmmmmmmmmmmmmmmmmm +seq_367573_x83 22 1 22 tcaccgggtgtacatcagctca chrII:11534525-11540624 22 3631 3652 tcaccgggtgtacatcagctaa + 1 mmmmmmmmmmmmmmmmmmmmMm +seq_367890_x78 20 1 20 tcaccgggtgtaaatcagct chrII:11534525-11540624 20 3535 3554 tcaccgggtgtaaatcagct + 0 mmmmmmmmmmmmmmmmmmmm +seq_367968_x76 23 1 23 tgtgggtgtccgttgcggtgcta chrII:11534525-11540624 23 3246 3268 tgtgggtgtccgttgcggtgcta + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_368044_x74 21 1 21 caccgggtgtacatcagctaa chrII:11534525-11540624 21 3632 3652 caccgggtgtacatcagctaa + 0 mmmmmmmmmmmmmmmmmmmmm +seq_368118_x72 22 1 22 tcaccgggtgtacatcagttaa chrII:11534525-11540624 22 3631 3652 tcaccgggtgtacatcagctaa + 1 mmmmmmmmmmmmmmmmmmMmmm +seq_368331_x70 22 1 22 tcaccgggtgtacatcagataa chrII:11534525-11540624 22 3631 3652 tcaccgggtgtacatcagctaa + 1 mmmmmmmmmmmmmmmmmmMmmm +seq_368539_x67 22 1 22 tcaccgggtgaacacttgcggt chrII:11534525-11540624 22 3285 3306 tcaccgggtgaacacttgcagt + 1 mmmmmmmmmmmmmmmmmmmMmm +seq_368606_x67 19 1 19 accgggtggaaactagcag chrII:11534525-11540624 19 3062 3080 accgggtggaaactagcag + 0 mmmmmmmmmmmmmmmmmmm +seq_368936_x64 19 1 19 tcaccgggtgtacatcagc chrII:11534525-11540624 19 3631 3649 tcaccgggtgtacatcagc + 0 mmmmmmmmmmmmmmmmmmm +seq_369000_x64 22 1 22 tcaccgggtggaaactagcggt chrII:11534525-11540624 22 3060 3081 tcaccgggtggaaactagcagt + 1 mmmmmmmmmmmmmmmmmmmMmm +seq_369064_x62 22 1 22 tcaccgggtgaacacttgcaat chrII:11534525-11540624 22 3285 3306 tcaccgggtgaacacttgcagt + 1 mmmmmmmmmmmmmmmmmmmmMm +seq_369608_x57 23 1 23 tcaccgggtggaaactagcagtg chrII:11534525-11540624 23 3060 3082 tcaccgggtggaaactagcagtg + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_369929_x51 22 1 22 tcaccgggtggaaactagcagt chrII:11534525-11540624 22 3060 3081 tcaccgggtggaaactagcagt + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_370030_x50 21 1 21 agctgatttcgtcttggtaat chrII:11534525-11540624 21 3495 3515 agctgatttcgtcttggtaat + 0 mmmmmmmmmmmmmmmmmmmmm +seq_370222_x46 22 1 22 tcaccgggtgtacatcagntaa chrII:11534525-11540624 22 3631 3652 tcaccgggtgtacatcagctaa + 1 mmmmmmmmmmmmmmmmmmMmmm +seq_370360_x45 22 1 22 tcaccgggtgtacatcagctta chrII:11534525-11540624 22 3631 3652 tcaccgggtgtacatcagctaa + 1 mmmmmmmmmmmmmmmmmmmmMm +seq_370405_x44 19 1 19 accgggtgaacacttgcag chrII:11534525-11540624 19 3287 3305 accgggtgaacacttgcag + 0 mmmmmmmmmmmmmmmmmmm +seq_370580_x42 23 1 23 ggtggtttttctctgcagtgata chrII:11534525-11540624 23 3716 3738 ggtggtttttctctgcagtgata + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_370988_x40 22 1 22 tcaccgggtggaaactaggagt chrII:11534525-11540624 22 3060 3081 tcaccgggtggaaactagcagt + 1 mmmmmmmmmmmmmmmmmmMmmm +seq_371145_x39 22 1 22 tcaccgggtgtacatcagctga chrII:11534525-11540624 22 3631 3652 tcaccgggtgtacatcagctaa + 1 mmmmmmmmmmmmmmmmmmmmMm +seq_371260_x37 22 1 22 tcaccgggtgaacacttggagt chrII:11534525-11540624 22 3285 3306 tcaccgggtgaacacttgcagt + 1 mmmmmmmmmmmmmmmmmmMmmm +seq_371297_x37 23 1 23 cgccaattttcgcttcagtgcta chrII:11534525-11540624 23 3124 3146 cgccaattttcgcttcagtgcta + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_371408_x36 22 1 22 tcaccgggtgaaaattcgcatg chrII:11534525-11540624 22 3165 3186 tcaccgggtgaaaattcgcatg + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_371444_x36 22 1 22 tcaccgggtgaaaattcgcagg chrII:11534525-11540624 22 3165 3186 tcaccgggtgaaaattcgcatg + 1 mmmmmmmmmmmmmmmmmmmmMm +seq_371516_x35 23 1 23 atcaccgggtggaaactagcagt chrII:11534525-11540624 23 3059 3081 atcaccgggtggaaactagcagt + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_371551_x34 21 1 21 caccgggtggaaactagcagt chrII:11534525-11540624 21 3061 3081 caccgggtggaaactagcagt + 0 mmmmmmmmmmmmmmmmmmmmm +seq_371653_x34 21 1 21 tcaccgggtgaaaattcgcat chrII:11534525-11540624 21 3165 3185 tcaccgggtgaaaattcgcat + 0 mmmmmmmmmmmmmmmmmmmmm +seq_371687_x34 20 1 20 tcaccgggtggaaactagca chrII:11534525-11540624 20 3060 3079 tcaccgggtggaaactagca + 0 mmmmmmmmmmmmmmmmmmmm +seq_371721_x34 23 1 23 atcaccgggtgtacatcagctaa chrII:11534525-11540624 23 3630 3652 atcaccgggtgtacatcagctaa + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_371821_x33 21 1 21 tcaccgggtgtaaatcagctt chrII:11534525-11540624 21 3535 3555 tcaccgggtgtaaatcagctt + 0 mmmmmmmmmmmmmmmmmmmmm +seq_371854_x33 21 1 21 tcaccgggagaaaaactggag chrII:11534525-11540624 21 3382 3402 tcaccgggagaaaaactggag + 0 mmmmmmmmmmmmmmmmmmmmm +seq_371887_x33 20 1 20 accgggtgtaaatcagcttg chrII:11534525-11540624 20 3537 3556 accgggtgtaaatcagcttg + 0 mmmmmmmmmmmmmmmmmmmm +seq_372017_x32 20 1 20 accgggtggaaactagcagt chrII:11534525-11540624 20 3062 3081 accgggtggaaactagcagt + 0 mmmmmmmmmmmmmmmmmmmm +seq_372080_x31 22 1 22 tcaccgggtgtaaatcagcttg chrII:11534525-11540624 22 3535 3556 tcaccgggtgtaaatcagcttg + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_372294_x30 21 1 21 tcaccgggtggaaactagtag chrII:11534525-11540624 21 3060 3080 tcaccgggtggaaactagcag + 1 mmmmmmmmmmmmmmmmmmMmm +seq_372324_x29 23 1 23 agtggatgtatgccatgatgata chrII:11534525-11540624 23 3591 3613 agtggatgtatgccatgatgata + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_372411_x29 20 1 20 accgggtgaacacttgcagt chrII:11534525-11540624 20 3287 3306 accgggtgaacacttgcagt + 0 mmmmmmmmmmmmmmmmmmmm +seq_372440_x28 22 1 22 tcaccgggtgtacatcagctaa chrII:11534525-11540624 22 3631 3652 tcaccgggtgtacatcagctaa + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_372550_x27 18 1 18 tcaccgggtgtacatcag chrII:11534525-11540624 18 3631 3648 tcaccgggtgtacatcag + 0 mmmmmmmmmmmmmmmmmm +seq_372631_x27 22 1 22 tcaccgggtgaaaaatcaccta chrII:11534525-11540624 22 3760 3781 tcaccgggtgaaaaatcaccta + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_372815_x25 20 1 20 tcaccgggtgaaaattcgca chrII:11534525-11540624 20 3165 3184 tcaccgggtgaaaattcgca + 0 mmmmmmmmmmmmmmmmmmmm +seq_372964_x24 22 1 22 tcaccgggtgtacatcagcgaa chrII:11534525-11540624 22 3631 3652 tcaccgggtgtacatcagctaa + 1 mmmmmmmmmmmmmmmmmmmMmm +seq_373012_x24 19 1 19 tcaccgggtgaacacttgc chrII:11534525-11540624 19 3285 3303 tcaccgggtgaacacttgc + 0 mmmmmmmmmmmmmmmmmmm +seq_373036_x24 20 1 20 accgggtggaaactagcagt chrII:11534525-11540624 20 3062 3081 accgggtggaaactagcagt + 0 mmmmmmmmmmmmmmmmmmmm +seq_373131_x23 20 1 20 caccgggtgaacacttgcag chrII:11534525-11540624 20 3286 3305 caccgggtgaacacttgcag + 0 mmmmmmmmmmmmmmmmmmmm +seq_373268_x22 21 1 21 tcaccgggtgaaaattcgcat chrII:11534525-11540624 21 3165 3185 tcaccgggtgaaaattcgcat + 0 mmmmmmmmmmmmmmmmmmmmm +seq_373312_x22 20 1 20 tcaccgggtgtaaatcagct chrII:11534525-11540624 20 3535 3554 tcaccgggtgtaaatcagct + 0 mmmmmmmmmmmmmmmmmmmm +seq_373334_x22 22 1 22 tcaccgggagaaaaactgcagt chrII:11534525-11540624 22 3382 3403 tcaccgggagaaaaactggagt + 1 mmmmmmmmmmmmmmmmmmMmmm +seq_373378_x22 22 1 22 tcaccgggtgaacacttgcagt chrII:11534525-11540624 22 3285 3306 tcaccgggtgaacacttgcagt + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_373400_x22 22 1 22 tcaccgggtgaaaattcgcctg chrII:11534525-11540624 22 3165 3186 tcaccgggtgaaaattcgcatg + 1 mmmmmmmmmmmmmmmmmmmMmm +seq_373588_x20 22 1 22 tcaccgggtgaaaattcgcttg chrII:11534525-11540624 22 3165 3186 tcaccgggtgaaaattcgcatg + 1 mmmmmmmmmmmmmmmmmmmMmm +seq_373608_x20 18 1 18 tcaccgggtgaacacttg chrII:11534525-11540624 18 3285 3302 tcaccgggtgaacacttg + 0 mmmmmmmmmmmmmmmmmm +seq_373668_x20 22 1 22 atcaccgggtgaacacttgcag chrII:11534525-11540624 22 3284 3305 atcaccgggtgaacacttgcag + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_373708_x20 23 1 23 tcaccgggagaaaaactggagta chrII:11534525-11540624 23 3382 3404 tcaccgggagaaaaactggagta + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_373747_x19 21 1 21 caccgggtgtacatcagctaa chrII:11534525-11540624 21 3632 3652 caccgggtgtacatcagctaa + 0 mmmmmmmmmmmmmmmmmmmmm +seq_373842_x19 22 1 22 tcaccgggtgaaaattcgaatg chrII:11534525-11540624 22 3165 3186 tcaccgggtgaaaattcgcatg + 1 mmmmmmmmmmmmmmmmmmMmmm +seq_373861_x19 23 1 23 tcaccgggtgaacacttgcagtg chrII:11534525-11540624 23 3285 3307 tcaccgggtgaacacttgcagtg + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_373956_x19 22 1 22 agctgatttcgtcttggtaata chrII:11534525-11540624 22 3495 3516 agctgatttcgtcttggtaata + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_374029_x18 23 1 23 tcaccgggtgtacatcagctaag chrII:11534525-11540624 23 3631 3653 tcaccgggtgtacatcagctaag + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_374047_x18 21 1 21 tcaccgggtggaaactagaag chrII:11534525-11540624 21 3060 3080 tcaccgggtggaaactagcag + 1 mmmmmmmmmmmmmmmmmmMmm +seq_374065_x18 21 1 21 caccgggtgtacatcagctaa chrII:11534525-11540624 21 3632 3652 caccgggtgtacatcagctaa + 0 mmmmmmmmmmmmmmmmmmmmm +seq_374083_x18 22 1 22 tcaccgggagaaaaactggtgt chrII:11534525-11540624 22 3382 3403 tcaccgggagaaaaactggagt + 1 mmmmmmmmmmmmmmmmmmmMmm +seq_374119_x18 22 1 22 tcaccgggtgaaaattcgtatg chrII:11534525-11540624 22 3165 3186 tcaccgggtgaaaattcgcatg + 1 mmmmmmmmmmmmmmmmmmMmmm +seq_374190_x17 21 1 21 tcaccgggagaaaaactggag chrII:11534525-11540624 21 3382 3402 tcaccgggagaaaaactggag + 0 mmmmmmmmmmmmmmmmmmmmm +seq_374224_x17 21 1 21 tcaccgggtggaaactagctg chrII:11534525-11540624 21 3060 3080 tcaccgggtggaaactagcag + 1 mmmmmmmmmmmmmmmmmmmMm +seq_374292_x17 20 1 20 agctgatttcgtcttggtaa chrII:11534525-11540624 20 3495 3514 agctgatttcgtcttggtaa + 0 mmmmmmmmmmmmmmmmmmmm +seq_374375_x16 20 1 20 tcaccgggtgaacacttgca chrII:11534525-11540624 20 3285 3304 tcaccgggtgaacacttgca + 0 mmmmmmmmmmmmmmmmmmmm +seq_374439_x16 22 1 22 caccgggtgaacacttgcagtg chrII:11534525-11540624 22 3286 3307 caccgggtgaacacttgcagtg + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_374519_x16 20 1 20 accgggtgaacacttgcagt chrII:11534525-11540624 20 3287 3306 accgggtgaacacttgcagt + 0 mmmmmmmmmmmmmmmmmmmm +seq_374582_x15 21 1 21 tcaccgggtggaaactagnag chrII:11534525-11540624 21 3060 3080 tcaccgggtggaaactagcag + 1 mmmmmmmmmmmmmmmmmmMmm +seq_374597_x15 21 1 21 tcaccgggtgtaaatcagctt chrII:11534525-11540624 21 3535 3555 tcaccgggtgtaaatcagctt + 0 mmmmmmmmmmmmmmmmmmmmm +seq_374757_x14 22 1 22 tgtgggtgtccgttgcggtgct chrII:11534525-11540624 22 3246 3267 tgtgggtgtccgttgcggtgct + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_374799_x14 22 1 22 tcaccgggtgaaaattcgnatg chrII:11534525-11540624 22 3165 3186 tcaccgggtgaaaattcgcatg + 1 mmmmmmmmmmmmmmmmmmMmmm +seq_374813_x14 20 1 20 tcaccgggtggaaactagca chrII:11534525-11540624 20 3060 3079 tcaccgggtggaaactagca + 0 mmmmmmmmmmmmmmmmmmmm +seq_374841_x14 22 1 22 tcaccgggtgtacatcagcaaa chrII:11534525-11540624 22 3631 3652 tcaccgggtgtacatcagctaa + 1 mmmmmmmmmmmmmmmmmmmMmm +seq_374908_x13 19 1 19 accgggtggaaactagcag chrII:11534525-11540624 19 3062 3080 accgggtggaaactagcag + 0 mmmmmmmmmmmmmmmmmmm +seq_374947_x13 23 1 23 tcaccgggagaaaaactggagta chrII:11534525-11540624 23 3382 3404 tcaccgggagaaaaactggagta + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_374960_x13 20 1 20 caccgggtggaaactagcag chrII:11534525-11540624 20 3061 3080 caccgggtggaaactagcag + 0 mmmmmmmmmmmmmmmmmmmm +seq_375025_x13 19 1 19 tcaccgggtggaaactagc chrII:11534525-11540624 19 3060 3078 tcaccgggtggaaactagc + 0 mmmmmmmmmmmmmmmmmmm +seq_375076_x12 23 1 23 atcaccgggtgaaaattcgcatg chrII:11534525-11540624 23 3164 3186 atcaccgggtgaaaattcgcatg + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_375088_x12 23 1 23 atcaccgggagaaaaactggagt chrII:11534525-11540624 23 3381 3403 atcaccgggagaaaaactggagt + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_375112_x12 21 1 21 tcaccgggagaaaaactggag chrII:11534525-11540624 21 3382 3402 tcaccgggagaaaaactggag + 0 mmmmmmmmmmmmmmmmmmmmm +seq_375172_x12 21 1 21 tcaccgggtggaaactagccg chrII:11534525-11540624 21 3060 3080 tcaccgggtggaaactagcag + 1 mmmmmmmmmmmmmmmmmmmMm +seq_375184_x12 21 1 21 tcaccgggtgaacacttgctg chrII:11534525-11540624 21 3285 3305 tcaccgggtgaacacttgcag + 1 mmmmmmmmmmmmmmmmmmmMm +seq_375196_x12 22 1 22 tcaccgggtgtaaatcagcttg chrII:11534525-11540624 22 3535 3556 tcaccgggtgtaaatcagcttg + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_375231_x11 23 1 23 tgctggtttcttccacagtggta chrII:11534525-11540624 23 3021 3043 tgctggtttcttccacagtggta + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_375253_x11 18 1 18 accgggtggaaactagca chrII:11534525-11540624 18 3062 3079 accgggtggaaactagca + 0 mmmmmmmmmmmmmmmmmm +seq_375286_x11 19 1 19 tcaccgggtgtaaatcagc chrII:11534525-11540624 19 3535 3553 tcaccgggtgtaaatcagc + 0 mmmmmmmmmmmmmmmmmmm +seq_375395_x10 20 1 20 accgggagaaaaactggagt chrII:11534525-11540624 20 3384 3403 accgggagaaaaactggagt + 0 mmmmmmmmmmmmmmmmmmmm +seq_375415_x10 21 1 21 tcaccgggtgaacacttgaag chrII:11534525-11540624 21 3285 3305 tcaccgggtgaacacttgcag + 1 mmmmmmmmmmmmmmmmmmMmm +seq_375435_x10 21 1 21 caccgggtggaaactagcagt chrII:11534525-11540624 21 3061 3081 caccgggtggaaactagcagt + 0 mmmmmmmmmmmmmmmmmmmmm +seq_375515_x10 22 1 22 tcaccgggtgtacatcagccaa chrII:11534525-11540624 22 3631 3652 tcaccgggtgtacatcagctaa + 1 mmmmmmmmmmmmmmmmmmmMmm +seq_375585_x10 22 1 22 tcaccgggtgtacatcaggtaa chrII:11534525-11540624 22 3631 3652 tcaccgggtgtacatcagctaa + 1 mmmmmmmmmmmmmmmmmmMmmm +seq_375595_x10 22 1 22 ctatcaccgggtgtacatcagc chrII:11534525-11540624 22 3628 3649 ctatcaccgggtgtacatcagc + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_375615_x10 23 1 23 atcaccgggtgaaaaatcaccta chrII:11534525-11540624 23 3759 3781 atcaccgggtgaaaaatcaccta + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_375635_x10 22 1 22 tcaccgggtgaaaattcgcatg chrII:11534525-11540624 22 3165 3186 tcaccgggtgaaaattcgcatg + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_375675_x10 19 1 19 tcaccgggtggaaactagc chrII:11534525-11540624 19 3060 3078 tcaccgggtggaaactagc + 0 mmmmmmmmmmmmmmmmmmm +seq_375685_x9 19 1 19 accgggtgaacacttgcag chrII:11534525-11540624 19 3287 3305 accgggtgaacacttgcag + 0 mmmmmmmmmmmmmmmmmmm +seq_375703_x9 21 1 21 tcaccgggtgtacatcagcta chrII:11534525-11540624 21 3631 3651 tcaccgggtgtacatcagcta + 0 mmmmmmmmmmmmmmmmmmmmm +seq_375730_x9 19 1 19 accgggtggaaactagcag chrII:11534525-11540624 19 3062 3080 accgggtggaaactagcag + 0 mmmmmmmmmmmmmmmmmmm +seq_375793_x9 21 1 21 tcaccgggtgaacacttgccg chrII:11534525-11540624 21 3285 3305 tcaccgggtgaacacttgcag + 1 mmmmmmmmmmmmmmmmmmmMm +seq_375829_x9 19 1 19 accgggtggaaactagcag chrII:11534525-11540624 19 3062 3080 accgggtggaaactagcag + 0 mmmmmmmmmmmmmmmmmmm +seq_375838_x9 21 1 21 gatacttctaacaactcgcta chrII:11534525-11540624 21 3739 3759 gatacttctaacaactcgcta + 0 mmmmmmmmmmmmmmmmmmmmm +seq_375874_x9 22 1 22 tcaccgggtgaaaattcgcacg chrII:11534525-11540624 22 3165 3186 tcaccgggtgaaaattcgcatg + 1 mmmmmmmmmmmmmmmmmmmmMm +seq_375958_x8 21 1 21 tcaccgggtgaacacttgtag chrII:11534525-11540624 21 3285 3305 tcaccgggtgaacacttgcag + 1 mmmmmmmmmmmmmmmmmmMmm +seq_375982_x8 19 1 19 accgggtgaacacttgcag chrII:11534525-11540624 19 3287 3305 accgggtgaacacttgcag + 0 mmmmmmmmmmmmmmmmmmm +seq_375998_x8 22 1 22 tcaccgggtgaaaattcgcgtg chrII:11534525-11540624 22 3165 3186 tcaccgggtgaaaattcgcatg + 1 mmmmmmmmmmmmmmmmmmmMmm +seq_376006_x8 22 1 22 atcaccgggtgaaaaatcacct chrII:11534525-11540624 22 3759 3780 atcaccgggtgaaaaatcacct + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_376014_x8 19 1 19 ccgggtggaaactagcagt chrII:11534525-11540624 19 3063 3081 ccgggtggaaactagcagt + 0 mmmmmmmmmmmmmmmmmmm +seq_376030_x8 19 1 19 acgcatccaaaagtctcta chrII:11534525-11540624 19 3363 3381 acgcatccaaaagtctcta + 0 mmmmmmmmmmmmmmmmmmm +seq_376070_x8 20 1 20 tcaccgggtgaacacttgca chrII:11534525-11540624 20 3285 3304 tcaccgggtgaacacttgca + 0 mmmmmmmmmmmmmmmmmmmm +seq_376094_x8 18 1 18 accgggtgaacacttgca chrII:11534525-11540624 18 3287 3304 accgggtgaacacttgca + 0 mmmmmmmmmmmmmmmmmm +seq_376102_x8 19 1 19 agctgatttcgtcttggta chrII:11534525-11540624 19 3495 3513 agctgatttcgtcttggta + 0 mmmmmmmmmmmmmmmmmmm +seq_376169_x7 20 1 20 tcaccgggtggaaactagna chrII:11534525-11540624 20 3060 3079 tcaccgggtggaaactagca + 1 mmmmmmmmmmmmmmmmmmMm +seq_376176_x7 21 1 21 tcaccgggtgaacacttgnag chrII:11534525-11540624 21 3285 3305 tcaccgggtgaacacttgcag + 1 mmmmmmmmmmmmmmmmmmMmm +seq_376232_x7 20 1 20 caccgggtgtacatcagcta chrII:11534525-11540624 20 3632 3651 caccgggtgtacatcagcta + 0 mmmmmmmmmmmmmmmmmmmm +seq_376281_x6 22 1 22 tcaccgggtgaaaattcgcaag chrII:11534525-11540624 22 3165 3186 tcaccgggtgaaaattcgcatg + 1 mmmmmmmmmmmmmmmmmmmmMm +seq_376311_x6 20 1 20 tcaccgggtgtacatcagct chrII:11534525-11540624 20 3631 3650 tcaccgggtgtacatcagct + 0 mmmmmmmmmmmmmmmmmmmm +seq_376317_x6 23 1 23 agctgatttcgtcttggtaataa chrII:11534525-11540624 23 3495 3517 agctgatttcgtcttggtaataa + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_376329_x6 23 1 23 agtggatgtatgccatgatgata chrII:11534525-11540624 23 3591 3613 agtggatgtatgccatgatgata + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_376395_x6 20 1 20 accgggtgaaaaatcaccta chrII:11534525-11540624 20 3762 3781 accgggtgaaaaatcaccta + 0 mmmmmmmmmmmmmmmmmmmm +seq_376431_x6 22 1 22 atcaccgggtgtacatcagcta chrII:11534525-11540624 22 3630 3651 atcaccgggtgtacatcagcta + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_376437_x6 22 1 22 tcaccgggtgtaaatcagctgg chrII:11534525-11540624 22 3535 3556 tcaccgggtgtaaatcagcttg + 1 mmmmmmmmmmmmmmmmmmmmMm +seq_376455_x6 23 1 23 cagctgatttcgtcttggtaata chrII:11534525-11540624 23 3494 3516 cagctgatttcgtcttggtaata + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_376527_x6 21 1 21 tcccaactattattctcggat chrII:11534525-11540624 21 2987 3007 tcccaactattattctcggat + 0 mmmmmmmmmmmmmmmmmmmmm +seq_376558_x5 20 1 20 tcaccgggtgtacatcagct chrII:11534525-11540624 20 3631 3650 tcaccgggtgtacatcagct + 0 mmmmmmmmmmmmmmmmmmmm +seq_376598_x5 20 1 20 accgggtgaacacttgcact chrII:11534525-11540624 20 3287 3306 accgggtgaacacttgcagt + 1 mmmmmmmmmmmmmmmmmmMm +seq_376613_x5 22 1 22 tgtgggtgtccgttgcggtgct chrII:11534525-11540624 22 3246 3267 tgtgggtgtccgttgcggtgct + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_376628_x5 22 1 22 tcaccgggtgtaaatcagattg chrII:11534525-11540624 22 3535 3556 tcaccgggtgtaaatcagcttg + 1 mmmmmmmmmmmmmmmmmmMmmm +seq_376663_x5 19 1 19 tcaccgggtgaacacttgc chrII:11534525-11540624 19 3285 3303 tcaccgggtgaacacttgc + 0 mmmmmmmmmmmmmmmmmmm +seq_376683_x5 23 1 23 tcaccgggtgtaaatcagcttgg chrII:11534525-11540624 23 3535 3557 tcaccgggtgtaaatcagcttgg + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_376688_x5 20 1 20 caccgggtgaacacttgcag chrII:11534525-11540624 20 3286 3305 caccgggtgaacacttgcag + 0 mmmmmmmmmmmmmmmmmmmm +seq_376693_x5 18 1 18 tcaccgggtgtaaatcag chrII:11534525-11540624 18 3535 3552 tcaccgggtgtaaatcag + 0 mmmmmmmmmmmmmmmmmm +seq_376708_x5 20 1 20 accgggtggaaactagcact chrII:11534525-11540624 20 3062 3081 accgggtggaaactagcagt + 1 mmmmmmmmmmmmmmmmmmMm +seq_376718_x5 22 1 22 tcaccgggagaaaaactggact chrII:11534525-11540624 22 3382 3403 tcaccgggagaaaaactggagt + 1 mmmmmmmmmmmmmmmmmmmmMm +seq_376723_x4 24 1 24 tcaccgggtggaaactagcagtag chrII:11534525-11540624 24 3060 3083 tcaccgggtggaaactagcagtgg + 1 mmmmmmmmmmmmmmmmmmmmmmMm +seq_376747_x4 20 1 20 tcaccgggagaaaaactgga chrII:11534525-11540624 20 3382 3401 tcaccgggagaaaaactgga + 0 mmmmmmmmmmmmmmmmmmmm +seq_376759_x4 20 1 20 accgggtgtacatcagctaa chrII:11534525-11540624 20 3633 3652 accgggtgtacatcagctaa + 0 mmmmmmmmmmmmmmmmmmmm +seq_376803_x4 19 1 19 tcaccgggtggaaactagc chrII:11534525-11540624 19 3060 3078 tcaccgggtggaaactagc + 0 mmmmmmmmmmmmmmmmmmm +seq_376843_x4 21 1 21 tcaccgggtgtacatcagata chrII:11534525-11540624 21 3631 3651 tcaccgggtgtacatcagcta + 1 mmmmmmmmmmmmmmmmmmMmm +seq_376851_x4 21 1 21 tcaccgggtgaaaaatcacct chrII:11534525-11540624 21 3760 3780 tcaccgggtgaaaaatcacct + 0 mmmmmmmmmmmmmmmmmmmmm +seq_376855_x4 23 1 23 tcaccgggtgaacacttgcagtg chrII:11534525-11540624 23 3285 3307 tcaccgggtgaacacttgcagtg + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_376859_x4 21 1 21 tcaccgggagaaaaactggtg chrII:11534525-11540624 21 3382 3402 tcaccgggagaaaaactggag + 1 mmmmmmmmmmmmmmmmmmmMm +seq_376863_x4 22 1 22 tcaccgggagaaaaactgtagt chrII:11534525-11540624 22 3382 3403 tcaccgggagaaaaactggagt + 1 mmmmmmmmmmmmmmmmmmMmmm +seq_376879_x4 22 1 22 atcaccgggtgaaaaatcacct chrII:11534525-11540624 22 3759 3780 atcaccgggtgaaaaatcacct + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_376891_x4 22 1 22 tcaccgggtgtaaatcagcgtg chrII:11534525-11540624 22 3535 3556 tcaccgggtgtaaatcagcttg + 1 mmmmmmmmmmmmmmmmmmmMmm +seq_376903_x4 18 1 18 cgggtggaaactagcagt chrII:11534525-11540624 18 3064 3081 cgggtggaaactagcagt + 0 mmmmmmmmmmmmmmmmmm +seq_376907_x4 21 1 21 agctgatttcgtcttggtaat chrII:11534525-11540624 21 3495 3515 agctgatttcgtcttggtaat + 0 mmmmmmmmmmmmmmmmmmmmm +seq_376915_x4 23 1 23 tatcaccgggtgaacacttgcag chrII:11534525-11540624 23 3283 3305 tatcaccgggtgaacacttgcag + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_376939_x4 23 1 23 tcaccgggtggaaactagcagtg chrII:11534525-11540624 23 3060 3082 tcaccgggtggaaactagcagtg + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_376955_x4 19 1 19 accgggtgtacatcagcta chrII:11534525-11540624 19 3633 3651 accgggtgtacatcagcta + 0 mmmmmmmmmmmmmmmmmmm +seq_376991_x4 22 1 22 tcaccgggtgtaaatcagcttg chrII:11534525-11540624 22 3535 3556 tcaccgggtgtaaatcagcttg + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_377013_x3 23 1 23 tcaccgggagaaaaactggagca chrII:11534525-11540624 23 3382 3404 tcaccgggagaaaaactggagta + 1 mmmmmmmmmmmmmmmmmmmmmMm +seq_377019_x3 24 1 24 tcaccgggtggaaactagcagttg chrII:11534525-11540624 24 3060 3083 tcaccgggtggaaactagcagtgg + 1 mmmmmmmmmmmmmmmmmmmmmmMm +seq_377022_x3 20 1 20 caccgggtgaacacttgcag chrII:11534525-11540624 20 3286 3305 caccgggtgaacacttgcag + 0 mmmmmmmmmmmmmmmmmmmm +seq_377028_x3 21 1 21 tcaccgggtgtacatcagnta chrII:11534525-11540624 21 3631 3651 tcaccgggtgtacatcagcta + 1 mmmmmmmmmmmmmmmmmmMmm +seq_377031_x3 21 1 21 agctgatttcgtcttggtaat chrII:11534525-11540624 21 3495 3515 agctgatttcgtcttggtaat + 0 mmmmmmmmmmmmmmmmmmmmm +seq_377043_x3 21 1 21 tcaccgggtgtacatcagtta chrII:11534525-11540624 21 3631 3651 tcaccgggtgtacatcagcta + 1 mmmmmmmmmmmmmmmmmmMmm +seq_377049_x3 21 1 21 tcaccgggtggaaactagcag chrII:11534525-11540624 21 3060 3080 tcaccgggtggaaactagcag + 0 mmmmmmmmmmmmmmmmmmmmm +seq_377055_x3 22 1 22 atcaccgggtggaaactagcag chrII:11534525-11540624 22 3059 3080 atcaccgggtggaaactagcag + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_377073_x3 21 1 21 caccgggtgaaaattcgcatg chrII:11534525-11540624 21 3166 3186 caccgggtgaaaattcgcatg + 0 mmmmmmmmmmmmmmmmmmmmm +seq_377076_x3 21 1 21 tcaccgggtggaaactagcgg chrII:11534525-11540624 21 3060 3080 tcaccgggtggaaactagcag + 1 mmmmmmmmmmmmmmmmmmmMm +seq_377091_x3 20 1 20 tcaccgggtgtacatcagct chrII:11534525-11540624 20 3631 3650 tcaccgggtgtacatcagct + 0 mmmmmmmmmmmmmmmmmmmm +seq_377100_x3 23 1 23 atcaccgggtgtaaatcagcttg chrII:11534525-11540624 23 3534 3556 atcaccgggtgtaaatcagcttg + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_377103_x3 19 1 19 accgggtgaaaattcgcat chrII:11534525-11540624 19 3167 3185 accgggtgaaaattcgcat + 0 mmmmmmmmmmmmmmmmmmm +seq_377109_x3 23 1 23 atcaccgggtgaacacttgcatt chrII:11534525-11540624 23 3284 3306 atcaccgggtgaacacttgcagt + 1 mmmmmmmmmmmmmmmmmmmmmMm +seq_377115_x3 23 1 23 gtgtgggtgtccgttgcggtgct chrII:11534525-11540624 23 3245 3267 gtgtgggtgtccgttgcggtgct + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_377133_x3 23 1 23 atcaccgggtgaacacttgcagt chrII:11534525-11540624 23 3284 3306 atcaccgggtgaacacttgcagt + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_377136_x3 19 1 19 accgggagaaaaactggag chrII:11534525-11540624 19 3384 3402 accgggagaaaaactggag + 0 mmmmmmmmmmmmmmmmmmm +seq_377166_x3 22 1 22 agctgatttcgtcttggtatta chrII:11534525-11540624 22 3495 3516 agctgatttcgtcttggtaata + 1 mmmmmmmmmmmmmmmmmmmMmm +seq_377178_x3 21 1 21 tcaccgggagaaaaactgcag chrII:11534525-11540624 21 3382 3402 tcaccgggagaaaaactggag + 1 mmmmmmmmmmmmmmmmmmMmm +seq_377184_x3 19 1 19 accgggtgaacacttgcag chrII:11534525-11540624 19 3287 3305 accgggtgaacacttgcag + 0 mmmmmmmmmmmmmmmmmmm +seq_377202_x3 21 1 21 caccgggtgaacacttgctgt chrII:11534525-11540624 21 3286 3306 caccgggtgaacacttgcagt + 1 mmmmmmmmmmmmmmmmmmMmm +seq_377208_x3 22 1 22 tcaccgggagaaaaactgaagt chrII:11534525-11540624 22 3382 3403 tcaccgggagaaaaactggagt + 1 mmmmmmmmmmmmmmmmmmMmmm +seq_377232_x3 18 1 18 cgggtgaacacttgcagt chrII:11534525-11540624 18 3289 3306 cgggtgaacacttgcagt + 0 mmmmmmmmmmmmmmmmmm +seq_377244_x3 20 1 20 tcaccgggtgtaaatcagct chrII:11534525-11540624 20 3535 3554 tcaccgggtgtaaatcagct + 0 mmmmmmmmmmmmmmmmmmmm +seq_377247_x3 22 1 22 tcaccgggtgaaaaatcaccta chrII:11534525-11540624 22 3760 3781 tcaccgggtgaaaaatcaccta + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_377256_x3 23 1 23 tcaccgggtgaacacttgcagtg chrII:11534525-11540624 23 3285 3307 tcaccgggtgaacacttgcagtg + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_377271_x3 22 1 22 tcaccgggtgaaaattcggatg chrII:11534525-11540624 22 3165 3186 tcaccgggtgaaaattcgcatg + 1 mmmmmmmmmmmmmmmmmmMmmm +seq_377286_x3 21 1 21 caccgggtgaacacttgcagt chrII:11534525-11540624 21 3286 3306 caccgggtgaacacttgcagt + 0 mmmmmmmmmmmmmmmmmmmmm +seq_377289_x3 21 1 21 atcaccgggtgaacacttgca chrII:11534525-11540624 21 3284 3304 atcaccgggtgaacacttgca + 0 mmmmmmmmmmmmmmmmmmmmm +seq_377301_x3 19 1 19 ccgggtgaacacttgcagt chrII:11534525-11540624 19 3288 3306 ccgggtgaacacttgcagt + 0 mmmmmmmmmmmmmmmmmmm +seq_377316_x3 21 1 21 tcaccgggtgtacatcagcaa chrII:11534525-11540624 21 3631 3651 tcaccgggtgtacatcagcta + 1 mmmmmmmmmmmmmmmmmmmMm +seq_377329_x2 22 1 22 tcaccgggtgaaaattcgcatg chrII:11534525-11540624 22 3165 3186 tcaccgggtgaaaattcgcatg + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_377331_x2 22 1 22 tcaccgggtgaaaaatcaccta chrII:11534525-11540624 22 3760 3781 tcaccgggtgaaaaatcaccta + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_377353_x2 22 1 22 atcaccgggtgaacacttgcag chrII:11534525-11540624 22 3284 3305 atcaccgggtgaacacttgcag + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_377355_x2 21 1 21 tcaccgggtgaacacttggag chrII:11534525-11540624 21 3285 3305 tcaccgggtgaacacttgcag + 1 mmmmmmmmmmmmmmmmmmMmm +seq_377371_x2 25 1 25 ggtggtttttctctgcagtgataaa chrII:11534525-11540624 25 3716 3740 ggtggtttttctctgcagtgataga + 1 mmmmmmmmmmmmmmmmmmmmmmmMm +seq_377381_x2 20 1 20 accgggtggaaactagcatt chrII:11534525-11540624 20 3062 3081 accgggtggaaactagcagt + 1 mmmmmmmmmmmmmmmmmmMm +seq_377387_x2 23 1 23 cgccaattttcgcttcagtgcta chrII:11534525-11540624 23 3124 3146 cgccaattttcgcttcagtgcta + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_377391_x2 22 1 22 tcaccgggagaaaaactggcgt chrII:11534525-11540624 22 3382 3403 tcaccgggagaaaaactggagt + 1 mmmmmmmmmmmmmmmmmmmMmm +seq_377399_x2 22 1 22 tcaccgggtgtaaatcagcatg chrII:11534525-11540624 22 3535 3556 tcaccgggtgtaaatcagcttg + 1 mmmmmmmmmmmmmmmmmmmMmm +seq_377401_x2 25 1 25 tcaccgggtggaaactagcagtggc chrII:11534525-11540624 25 3060 3084 tcaccgggtggaaactagcagtggc + 0 mmmmmmmmmmmmmmmmmmmmmmmmm +seq_377403_x2 21 1 21 caccgggagaaaaactggagt chrII:11534525-11540624 21 3383 3403 caccgggagaaaaactggagt + 0 mmmmmmmmmmmmmmmmmmmmm +seq_377411_x2 27 1 27 tcaccgggtgaacacttgcagtggttc chrII:11534525-11540624 27 3285 3311 tcaccgggtgaacacttgcagtggtcc + 1 mmmmmmmmmmmmmmmmmmmmmmmmmMm +seq_377413_x2 22 1 22 cgaaaaggggagcaacgaaaag chrII:11534525-11540624 22 99 120 cgaaaaggggagcaacgaaaag + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_377413_x2 22 1 22 cgaaaaggggagcaacgaaaag chrII:11534525-11540624 22 293 314 cgaaaaggggagcaacgaaaag - 0 mmmmmmmmmmmmmmmmmmmmmm +seq_377421_x2 25 1 25 tcaccgggtggaaactagcagtgac chrII:11534525-11540624 25 3060 3084 tcaccgggtggaaactagcagtggc + 1 mmmmmmmmmmmmmmmmmmmmmmmMm +seq_377427_x2 23 1 23 tcaccgggtggaaactagcagtg chrII:11534525-11540624 23 3060 3082 tcaccgggtggaaactagcagtg + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_377431_x2 23 1 23 atcaccgggtggaaactagcagt chrII:11534525-11540624 23 3059 3081 atcaccgggtggaaactagcagt + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_377439_x2 21 1 21 caccgggtgaaaaatcaccta chrII:11534525-11540624 21 3761 3781 caccgggtgaaaaatcaccta + 0 mmmmmmmmmmmmmmmmmmmmm +seq_377447_x2 26 1 26 tcaccgggtgaacacttgcagtgatc chrII:11534525-11540624 26 3285 3310 tcaccgggtgaacacttgcagtggtc + 1 mmmmmmmmmmmmmmmmmmmmmmmMmm +seq_377451_x2 18 1 18 tcaccgggtggaaactag chrII:11534525-11540624 18 3060 3077 tcaccgggtggaaactag + 0 mmmmmmmmmmmmmmmmmm +seq_377459_x2 23 1 23 ggtggtttttctctgcagtgcta chrII:11534525-11540624 23 3716 3738 ggtggtttttctctgcagtgata + 1 mmmmmmmmmmmmmmmmmmmmMmm +seq_377467_x2 22 1 22 caccgggtgtacatcagctaag chrII:11534525-11540624 22 3632 3653 caccgggtgtacatcagctaag + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_377479_x2 22 1 22 atcaccgggtggaaactagcag chrII:11534525-11540624 22 3059 3080 atcaccgggtggaaactagcag + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_377489_x2 23 1 23 atcaccgggtgtacatcagctaa chrII:11534525-11540624 23 3630 3652 atcaccgggtgtacatcagctaa + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_377521_x2 23 1 23 atcaccgggtgaacacttgaagt chrII:11534525-11540624 23 3284 3306 atcaccgggtgaacacttgcagt + 1 mmmmmmmmmmmmmmmmmmmMmmm +seq_377527_x2 23 1 23 atcaccgggtgaacacttgcagt chrII:11534525-11540624 23 3284 3306 atcaccgggtgaacacttgcagt + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_377529_x2 23 1 23 atcaccgggagaaaaactggagt chrII:11534525-11540624 23 3381 3403 atcaccgggagaaaaactggagt + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_377533_x2 22 1 22 agtggatgtatgccatgatgat chrII:11534525-11540624 22 3591 3612 agtggatgtatgccatgatgat + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_377535_x2 21 1 21 caccgggtgtacatcagctaa chrII:11534525-11540624 21 3632 3652 caccgggtgtacatcagctaa + 0 mmmmmmmmmmmmmmmmmmmmm +seq_377539_x2 18 1 18 tcaccgggtggaaactag chrII:11534525-11540624 18 3060 3077 tcaccgggtggaaactag + 0 mmmmmmmmmmmmmmmmmm +seq_377547_x2 20 1 20 tcaccgggtgaacacttgca chrII:11534525-11540624 20 3285 3304 tcaccgggtgaacacttgca + 0 mmmmmmmmmmmmmmmmmmmm +seq_377565_x2 19 1 19 tcaccgggtgaacacttgc chrII:11534525-11540624 19 3285 3303 tcaccgggtgaacacttgc + 0 mmmmmmmmmmmmmmmmmmm +seq_377575_x2 21 1 21 tcaccgggtggaaactaggag chrII:11534525-11540624 21 3060 3080 tcaccgggtggaaactagcag + 1 mmmmmmmmmmmmmmmmmmMmm +seq_377585_x2 18 1 18 accgggtgtacatcagct chrII:11534525-11540624 18 3633 3650 accgggtgtacatcagct + 0 mmmmmmmmmmmmmmmmmm +seq_377587_x2 21 1 21 tcaccgggtgtacatcagcga chrII:11534525-11540624 21 3631 3651 tcaccgggtgtacatcagcta + 1 mmmmmmmmmmmmmmmmmmmMm +seq_377595_x2 23 1 23 tcaccgggtgtacatcagctaag chrII:11534525-11540624 23 3631 3653 tcaccgggtgtacatcagctaag + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_377597_x2 21 1 21 caccgggtgtaaatcagcttg chrII:11534525-11540624 21 3536 3556 caccgggtgtaaatcagcttg + 0 mmmmmmmmmmmmmmmmmmmmm +seq_377599_x2 20 1 20 tcaccgggtggaaactagta chrII:11534525-11540624 20 3060 3079 tcaccgggtggaaactagca + 1 mmmmmmmmmmmmmmmmmmMm +seq_377603_x2 20 1 20 tcaccgggagaaaaactgga chrII:11534525-11540624 20 3382 3401 tcaccgggagaaaaactgga + 0 mmmmmmmmmmmmmmmmmmmm +seq_377607_x2 20 1 20 accgggtgtacatcagctca chrII:11534525-11540624 20 3633 3652 accgggtgtacatcagctaa + 1 mmmmmmmmmmmmmmmmmmMm +seq_377619_x2 25 1 25 tcaccgggtggaaactagcagtagc chrII:11534525-11540624 25 3060 3084 tcaccgggtggaaactagcagtggc + 1 mmmmmmmmmmmmmmmmmmmmmmMmm +seq_377621_x2 19 1 19 accgggtgtaaatcagctt chrII:11534525-11540624 19 3537 3555 accgggtgtaaatcagctt + 0 mmmmmmmmmmmmmmmmmmm +seq_377623_x2 19 1 19 accgggtgtacatcagcta chrII:11534525-11540624 19 3633 3651 accgggtgtacatcagcta + 0 mmmmmmmmmmmmmmmmmmm +seq_377627_x2 23 1 23 atcaccgggtgtacatcagctaa chrII:11534525-11540624 23 3630 3652 atcaccgggtgtacatcagctaa + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_377629_x2 24 1 24 tcaccgggtgaacacttgcagtgg chrII:11534525-11540624 24 3285 3308 tcaccgggtgaacacttgcagtgg + 0 mmmmmmmmmmmmmmmmmmmmmmmm +seq_377633_x2 21 1 21 gcctctacaagttgtgatcgt chrII:11534525-11540624 21 841 861 gcctctacaagttgtgatcgt + 0 mmmmmmmmmmmmmmmmmmmmm +seq_377645_x2 22 1 22 cgccaattttcgcttcagtgct chrII:11534525-11540624 22 3124 3145 cgccaattttcgcttcagtgct + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_377657_x2 22 1 22 ggtggtttttctctgcagtgat chrII:11534525-11540624 22 3716 3737 ggtggtttttctctgcagtgat + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_377659_x2 19 1 19 ccgggtgtacatcagctaa chrII:11534525-11540624 19 3634 3652 ccgggtgtacatcagctaa + 0 mmmmmmmmmmmmmmmmmmm +seq_377665_x2 22 1 22 agctgatttcgtcttggtcata chrII:11534525-11540624 22 3495 3516 agctgatttcgtcttggtaata + 1 mmmmmmmmmmmmmmmmmmMmmm +seq_377669_x2 19 1 19 accgggtgaaaattcgcat chrII:11534525-11540624 19 3167 3185 accgggtgaaaattcgcat + 0 mmmmmmmmmmmmmmmmmmm +seq_377673_x2 20 1 20 accgggagaaaaactggagt chrII:11534525-11540624 20 3384 3403 accgggagaaaaactggagt + 0 mmmmmmmmmmmmmmmmmmmm +seq_377675_x2 25 1 25 tcaccgggtggaaactagcagtgcc chrII:11534525-11540624 25 3060 3084 tcaccgggtggaaactagcagtggc + 1 mmmmmmmmmmmmmmmmmmmmmmmMm +seq_377683_x2 20 1 20 tcaccgggtggaaactagaa chrII:11534525-11540624 20 3060 3079 tcaccgggtggaaactagca + 1 mmmmmmmmmmmmmmmmmmMm +seq_377687_x2 23 1 23 tcaccgggtgaacacttgctgtg chrII:11534525-11540624 23 3285 3307 tcaccgggtgaacacttgcagtg + 1 mmmmmmmmmmmmmmmmmmmMmmm +seq_377695_x2 23 1 23 tcaccgggagaaaaactggtgta chrII:11534525-11540624 23 3382 3404 tcaccgggagaaaaactggagta + 1 mmmmmmmmmmmmmmmmmmmMmmm +seq_377699_x2 23 1 23 ctatcaccgggtgtacatcagct chrII:11534525-11540624 23 3628 3650 ctatcaccgggtgtacatcagct + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_377705_x2 19 1 19 accgggtgtaaatcagctt chrII:11534525-11540624 19 3537 3555 accgggtgtaaatcagctt + 0 mmmmmmmmmmmmmmmmmmm +seq_377709_x2 23 1 23 atcaccgggtgaacacttgccgt chrII:11534525-11540624 23 3284 3306 atcaccgggtgaacacttgcagt + 1 mmmmmmmmmmmmmmmmmmmmMmm +seq_377731_x2 21 1 21 caccgggtgaaaaatcaccta chrII:11534525-11540624 21 3761 3781 caccgggtgaaaaatcaccta + 0 mmmmmmmmmmmmmmmmmmmmm +seq_377741_x2 22 1 22 tcaccgggtgtaaatcagtttg chrII:11534525-11540624 22 3535 3556 tcaccgggtgtaaatcagcttg + 1 mmmmmmmmmmmmmmmmmmMmmm +seq_377746_x1 22 1 22 cacgaaaaggggagcagaacga chrII:11534525-11540624 22 20 41 cacgaaaaggggagcagaacga + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_377749_x1 23 1 23 tcaccgggtgtacatcagctaag chrII:11534525-11540624 23 3631 3653 tcaccgggtgtacatcagctaag + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_377750_x1 20 1 20 agctgatttcgtcttggtca chrII:11534525-11540624 20 3495 3514 agctgatttcgtcttggtaa + 1 mmmmmmmmmmmmmmmmmmMm +seq_377755_x1 18 1 18 cgggtgaaaattcgcatg chrII:11534525-11540624 18 3169 3186 cgggtgaaaattcgcatg + 0 mmmmmmmmmmmmmmmmmm +seq_377759_x1 20 1 20 tcaccgggtgtacatcagtt chrII:11534525-11540624 20 3631 3650 tcaccgggtgtacatcagct + 1 mmmmmmmmmmmmmmmmmmMm +seq_377760_x1 19 1 19 atcaccgggtgtacatcag chrII:11534525-11540624 19 3630 3648 atcaccgggtgtacatcag + 0 mmmmmmmmmmmmmmmmmmm +seq_377761_x1 19 1 19 tcaccgggtgaaaattcgc chrII:11534525-11540624 19 3165 3183 tcaccgggtgaaaattcgc + 0 mmmmmmmmmmmmmmmmmmm +seq_377766_x1 22 1 22 cagctgatttcgtcttggtaat chrII:11534525-11540624 22 3494 3515 cagctgatttcgtcttggtaat + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_377768_x1 21 1 21 accgggtggaaactagcagtg chrII:11534525-11540624 21 3062 3082 accgggtggaaactagcagtg + 0 mmmmmmmmmmmmmmmmmmmmm +seq_377773_x1 24 1 24 tcaccgggtgaacacttgcagtgg chrII:11534525-11540624 24 3285 3308 tcaccgggtgaacacttgcagtgg + 0 mmmmmmmmmmmmmmmmmmmmmmmm +seq_377774_x1 23 1 23 tgtgggtgtccgttgcggtgtta chrII:11534525-11540624 23 3246 3268 tgtgggtgtccgttgcggtgcta + 1 mmmmmmmmmmmmmmmmmmmmMmm +seq_377775_x1 22 1 22 atcaccgggagaaaaactggag chrII:11534525-11540624 22 3381 3402 atcaccgggagaaaaactggag + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_377782_x1 23 1 23 atcaccgggtgaacacttgctgt chrII:11534525-11540624 23 3284 3306 atcaccgggtgaacacttgcagt + 1 mmmmmmmmmmmmmmmmmmmmMmm +seq_377784_x1 23 1 23 atcaccgggtgtacatcatctaa chrII:11534525-11540624 23 3630 3652 atcaccgggtgtacatcagctaa + 1 mmmmmmmmmmmmmmmmmmMmmmm +seq_377786_x1 21 1 21 tcaccgggtgaacacttgcgg chrII:11534525-11540624 21 3285 3305 tcaccgggtgaacacttgcag + 1 mmmmmmmmmmmmmmmmmmmMm +seq_377789_x1 20 1 20 accgggtgaacacttgcatt chrII:11534525-11540624 20 3287 3306 accgggtgaacacttgcagt + 1 mmmmmmmmmmmmmmmmmmMm +seq_377790_x1 20 1 20 tcaccgggtgaaaattcgta chrII:11534525-11540624 20 3165 3184 tcaccgggtgaaaattcgca + 1 mmmmmmmmmmmmmmmmmmMm +seq_377791_x1 19 1 19 accgggtgaaaattcgcat chrII:11534525-11540624 19 3167 3185 accgggtgaaaattcgcat + 0 mmmmmmmmmmmmmmmmmmm +seq_377796_x1 18 1 18 taatatcgtccttcttca chrII:11534525-11540624 18 5866 5883 taatatcgtccttcttca + 0 mmmmmmmmmmmmmmmmmm +seq_377801_x1 21 1 21 tggtttttctctgcagtgtta chrII:11534525-11540624 21 3718 3738 tggtttttctctgcagtgata + 1 mmmmmmmmmmmmmmmmmmMmm +seq_377807_x1 25 1 25 tcaccgggtggaaactagcagaggc chrII:11534525-11540624 25 3060 3084 tcaccgggtggaaactagcagtggc + 1 mmmmmmmmmmmmmmmmmmmmmMmmm +seq_377808_x1 22 1 22 tcaccgggtgtaaatcaggttg chrII:11534525-11540624 22 3535 3556 tcaccgggtgtaaatcagcttg + 1 mmmmmmmmmmmmmmmmmmMmmm +seq_377816_x1 18 1 18 accgggtggaaactagca chrII:11534525-11540624 18 3062 3079 accgggtggaaactagca + 0 mmmmmmmmmmmmmmmmmm +seq_377817_x1 22 1 22 ctatcaccgggtgtacatcagc chrII:11534525-11540624 22 3628 3649 ctatcaccgggtgtacatcagc + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_377819_x1 20 1 20 tcaccgggagaaaaactgga chrII:11534525-11540624 20 3382 3401 tcaccgggagaaaaactgga + 0 mmmmmmmmmmmmmmmmmmmm +seq_377825_x1 20 1 20 caccgggtgtaaatcagctt chrII:11534525-11540624 20 3536 3555 caccgggtgtaaatcagctt + 0 mmmmmmmmmmmmmmmmmmmm +seq_377832_x1 23 1 23 ctatcaccgggtgtacatcagtt chrII:11534525-11540624 23 3628 3650 ctatcaccgggtgtacatcagct + 1 mmmmmmmmmmmmmmmmmmmmmMm +seq_377834_x1 21 1 21 aaaaggggagctggcactgtg chrII:11534525-11540624 21 277 297 aaaaggggagctggcactgtg - 0 mmmmmmmmmmmmmmmmmmmmm +seq_377840_x1 19 1 19 caaaaaggggatctgcgaa chrII:11534525-11540624 19 340 358 caaaaaggggatctgcgaa - 0 mmmmmmmmmmmmmmmmmmm +seq_377840_x1 19 1 19 caaaaaggggatctgcgaa chrII:11534525-11540624 19 54 72 caaaaaggggatctgcgaa + 0 mmmmmmmmmmmmmmmmmmm +seq_377844_x1 21 1 21 atcaccgggtgaacacttgca chrII:11534525-11540624 21 3284 3304 atcaccgggtgaacacttgca + 0 mmmmmmmmmmmmmmmmmmmmm +seq_377849_x1 24 1 24 tcaccgggtgtaaatcagcttggc chrII:11534525-11540624 24 3535 3558 tcaccgggtgtaaatcagcttggc + 0 mmmmmmmmmmmmmmmmmmmmmmmm +seq_377854_x1 23 1 23 tggtttttctctgcagtgataga chrII:11534525-11540624 23 3718 3740 tggtttttctctgcagtgataga + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_377855_x1 22 1 22 atcaccgggtgaacacttgcag chrII:11534525-11540624 22 3284 3305 atcaccgggtgaacacttgcag + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_377858_x1 24 1 24 tcaccgggtgaacacttgcagtcg chrII:11534525-11540624 24 3285 3308 tcaccgggtgaacacttgcagtgg + 1 mmmmmmmmmmmmmmmmmmmmmmMm +seq_377861_x1 18 1 18 ccgggtgaacacttgcag chrII:11534525-11540624 18 3288 3305 ccgggtgaacacttgcag + 0 mmmmmmmmmmmmmmmmmm +seq_377862_x1 21 1 21 ctatcaccgggtgtacatcag chrII:11534525-11540624 21 3628 3648 ctatcaccgggtgtacatcag + 0 mmmmmmmmmmmmmmmmmmmmm +seq_377869_x1 20 1 20 accgggtgtacatcagctaa chrII:11534525-11540624 20 3633 3652 accgggtgtacatcagctaa + 0 mmmmmmmmmmmmmmmmmmmm +seq_377870_x1 18 1 18 ccgggtgtaaatcagctt chrII:11534525-11540624 18 3538 3555 ccgggtgtaaatcagctt + 0 mmmmmmmmmmmmmmmmmm +seq_377872_x1 18 1 18 cgggagaaaaactggagt chrII:11534525-11540624 18 3386 3403 cgggagaaaaactggagt + 0 mmmmmmmmmmmmmmmmmm +seq_377877_x1 18 1 18 tcaccgggagaaaaactg chrII:11534525-11540624 18 3382 3399 tcaccgggagaaaaactg + 0 mmmmmmmmmmmmmmmmmm +seq_377883_x1 19 1 19 tttcttgtccaatacatct chrII:11534525-11540624 19 879 897 tttcttgtccaatacatct + 0 mmmmmmmmmmmmmmmmmmm +seq_377884_x1 24 1 24 tcaccgggtgtaaatcagcttggc chrII:11534525-11540624 24 3535 3558 tcaccgggtgtaaatcagcttggc + 0 mmmmmmmmmmmmmmmmmmmmmmmm +seq_377893_x1 22 1 22 cgaaaaggggatctgcaaaaag chrII:11534525-11540624 22 353 374 cgaaaaggggatctgcaaaaag - 0 mmmmmmmmmmmmmmmmmmmmmm +seq_377893_x1 22 1 22 cgaaaaggggatctgcaaaaag chrII:11534525-11540624 22 39 60 cgaaaaggggatctgcaaaaag + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_377895_x1 24 1 24 atcaccgggagaaaaactggagta chrII:11534525-11540624 24 3381 3404 atcaccgggagaaaaactggagta + 0 mmmmmmmmmmmmmmmmmmmmmmmm +seq_377896_x1 26 1 26 tcaccgggtgaacacttgcagtggcc chrII:11534525-11540624 26 3285 3310 tcaccgggtgaacacttgcagtggtc + 1 mmmmmmmmmmmmmmmmmmmmmmmmMm +seq_377898_x1 26 1 26 tcaccgggtggaaactagcagtgact chrII:11534525-11540624 26 3060 3085 tcaccgggtggaaactagcagtggct + 1 mmmmmmmmmmmmmmmmmmmmmmmMmm +seq_377899_x1 19 1 19 caccgggtgaacacttgca chrII:11534525-11540624 19 3286 3304 caccgggtgaacacttgca + 0 mmmmmmmmmmmmmmmmmmm +seq_377906_x1 22 1 22 tcaccgggagaaaaactggatt chrII:11534525-11540624 22 3382 3403 tcaccgggagaaaaactggagt + 1 mmmmmmmmmmmmmmmmmmmmMm +seq_377907_x1 21 1 21 tcaccgggtgaaaattcgcct chrII:11534525-11540624 21 3165 3185 tcaccgggtgaaaattcgcat + 1 mmmmmmmmmmmmmmmmmmmMm +seq_377908_x1 21 1 21 caccgggtggaaactagcatt chrII:11534525-11540624 21 3061 3081 caccgggtggaaactagcagt + 1 mmmmmmmmmmmmmmmmmmmMm +seq_377909_x1 20 1 20 cgaaaaggggagcagaacga chrII:11534525-11540624 20 22 41 cgaaaaggggagcagaacga + 0 mmmmmmmmmmmmmmmmmmmm +seq_377913_x1 24 1 24 tcaccgggtggaaactagcagtgg chrII:11534525-11540624 24 3060 3083 tcaccgggtggaaactagcagtgg + 0 mmmmmmmmmmmmmmmmmmmmmmmm +seq_377914_x1 21 1 21 tcaccgggtgtaaatcagcct chrII:11534525-11540624 21 3535 3555 tcaccgggtgtaaatcagctt + 1 mmmmmmmmmmmmmmmmmmmMm +seq_377915_x1 27 1 27 gaactatcaccgggtggaaactagcag chrII:11534525-11540624 27 3054 3080 gaactatcaccgggtggaaactagcag + 0 mmmmmmmmmmmmmmmmmmmmmmmmmmm +seq_377920_x1 22 1 22 tcaccgggtgtaaatcagctag chrII:11534525-11540624 22 3535 3556 tcaccgggtgtaaatcagcttg + 1 mmmmmmmmmmmmmmmmmmmmMm +seq_377927_x1 23 1 23 aaaggggagcagaacgaaaaggg chrII:11534525-11540624 23 25 47 aaaggggagcagaacgaaaaggg + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_377931_x1 22 1 22 tgtgggtgtccgttgcggtgat chrII:11534525-11540624 22 3246 3267 tgtgggtgtccgttgcggtgct + 1 mmmmmmmmmmmmmmmmmmmmMm +seq_377936_x1 21 1 21 cgccaattttcgcttcagcgc chrII:11534525-11540624 21 3124 3144 cgccaattttcgcttcagtgc + 1 mmmmmmmmmmmmmmmmmmMmm +seq_377941_x1 23 1 23 tatcaccgggtgaaaaatcacct chrII:11534525-11540624 23 3758 3780 tatcaccgggtgaaaaatcacct + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_377953_x1 21 1 21 tggtttttctctgcagtgata chrII:11534525-11540624 21 3718 3738 tggtttttctctgcagtgata + 0 mmmmmmmmmmmmmmmmmmmmm +seq_377955_x1 18 1 18 gggagcagaacgaaaagg chrII:11534525-11540624 18 367 384 gggagcagaacgaaaagg - 0 mmmmmmmmmmmmmmmmmm +seq_377955_x1 18 1 18 gggagcagaacgaaaagg chrII:11534525-11540624 18 29 46 gggagcagaacgaaaagg + 0 mmmmmmmmmmmmmmmmmm +seq_377956_x1 21 1 21 tgctggtttcttccacagtgg chrII:11534525-11540624 21 3021 3041 tgctggtttcttccacagtgg + 0 mmmmmmmmmmmmmmmmmmmmm +seq_377966_x1 22 1 22 cgccaattttcgcttcagttct chrII:11534525-11540624 22 3124 3145 cgccaattttcgcttcagtgct + 1 mmmmmmmmmmmmmmmmmmmMmm +seq_377969_x1 23 1 23 agtggatgtatgccatgaagata chrII:11534525-11540624 23 3591 3613 agtggatgtatgccatgatgata + 1 mmmmmmmmmmmmmmmmmmMmmmm +seq_377970_x1 22 1 22 atcaccgggtggaaactagcag chrII:11534525-11540624 22 3059 3080 atcaccgggtggaaactagcag + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_377977_x1 23 1 23 tcaccgggtgaacacttgcaggg chrII:11534525-11540624 23 3285 3307 tcaccgggtgaacacttgcagtg + 1 mmmmmmmmmmmmmmmmmmmmmMm +seq_377987_x1 23 1 23 agtggatgtatgccatgatggta chrII:11534525-11540624 23 3591 3613 agtggatgtatgccatgatgata + 1 mmmmmmmmmmmmmmmmmmmmMmm +seq_377988_x1 20 1 20 accgggtggaaactagcant chrII:11534525-11540624 20 3062 3081 accgggtggaaactagcagt + 1 mmmmmmmmmmmmmmmmmmMm +seq_377991_x1 18 1 18 cgggtgaaaaatcaccta chrII:11534525-11540624 18 3764 3781 cgggtgaaaaatcaccta + 0 mmmmmmmmmmmmmmmmmm +seq_377992_x1 21 1 21 gggtagaggacgacactgcca chrII:11534525-11540624 21 5732 5752 gggtagaggacgacactgcca + 0 mmmmmmmmmmmmmmmmmmmmm +seq_377993_x1 20 1 20 tcaccgggtgaaaattcgca chrII:11534525-11540624 20 3165 3184 tcaccgggtgaaaattcgca + 0 mmmmmmmmmmmmmmmmmmmm +seq_377994_x1 19 1 19 caccgggtggaaactagca chrII:11534525-11540624 19 3061 3079 caccgggtggaaactagca + 0 mmmmmmmmmmmmmmmmmmm +seq_378003_x1 22 1 22 caccgggtgaacacttgcagcg chrII:11534525-11540624 22 3286 3307 caccgggtgaacacttgcagtg + 1 mmmmmmmmmmmmmmmmmmmmMm +seq_378015_x1 22 1 22 ctctacaagttgtgatcgtgag chrII:11534525-11540624 22 843 864 ctctacaagttgtgatcgtgag + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_378022_x1 19 1 19 accgggagaaaaactggag chrII:11534525-11540624 19 3384 3402 accgggagaaaaactggag + 0 mmmmmmmmmmmmmmmmmmm +seq_378023_x1 21 1 21 agctgatttcgtcttggttat chrII:11534525-11540624 21 3495 3515 agctgatttcgtcttggtaat + 1 mmmmmmmmmmmmmmmmmmMmm +seq_378026_x1 22 1 22 accgggtgaacacttgcagttg chrII:11534525-11540624 22 3287 3308 accgggtgaacacttgcagtgg + 1 mmmmmmmmmmmmmmmmmmmmMm +seq_378027_x1 22 1 22 gttgtgatcgtgaggccccttc chrII:11534525-11540624 22 851 872 gttgtgatcgtgaggccccttc + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_378031_x1 18 1 18 agctcgtcattgagatta chrII:11534525-11540624 18 3517 3534 agctcgtcattgagatta + 0 mmmmmmmmmmmmmmmmmm +seq_378039_x1 24 1 24 tcaccgggtgtacatcagctaagg chrII:11534525-11540624 24 3631 3654 tcaccgggtgtacatcagctaagg + 0 mmmmmmmmmmmmmmmmmmmmmmmm +seq_378042_x1 23 1 23 cgccaattttcgcttcagggcta chrII:11534525-11540624 23 3124 3146 cgccaattttcgcttcagtgcta + 1 mmmmmmmmmmmmmmmmmmMmmmm +seq_378043_x1 22 1 22 gaaaaggggagcagaacgaaga chrII:11534525-11540624 22 23 44 gaaaaggggagcagaacgaaaa + 1 mmmmmmmmmmmmmmmmmmmmMm +seq_378053_x1 21 1 21 acgaaaaggggagcagaacga chrII:11534525-11540624 21 21 41 acgaaaaggggagcagaacga + 0 mmmmmmmmmmmmmmmmmmmmm +seq_378054_x1 22 1 22 ggtggtttttctctgcagtgat chrII:11534525-11540624 22 3716 3737 ggtggtttttctctgcagtgat + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_378055_x1 18 1 18 cgggagaaaaactggagt chrII:11534525-11540624 18 3386 3403 cgggagaaaaactggagt + 0 mmmmmmmmmmmmmmmmmm +seq_378057_x1 22 1 22 tgcgcctttgaagagtactgta chrII:11534525-11540624 22 1745 1766 tgcgcctttgaagagtactgta + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_378058_x1 23 1 23 tcaccgggtgaaaattcgcaggg chrII:11534525-11540624 23 3165 3187 tcaccgggtgaaaattcgcatgg + 1 mmmmmmmmmmmmmmmmmmmmMmm +seq_378060_x1 24 1 24 tatcaccgggtgaacacttgcagt chrII:11534525-11540624 24 3283 3306 tatcaccgggtgaacacttgcagt + 0 mmmmmmmmmmmmmmmmmmmmmmmm +seq_378062_x1 23 1 23 agtggatgtatgccatgatgcta chrII:11534525-11540624 23 3591 3613 agtggatgtatgccatgatgata + 1 mmmmmmmmmmmmmmmmmmmmMmm +seq_378063_x1 23 1 23 tcaccgggagaaaaactggagaa chrII:11534525-11540624 23 3382 3404 tcaccgggagaaaaactggagta + 1 mmmmmmmmmmmmmmmmmmmmmMm +seq_378064_x1 24 1 24 ggtggtttttctctgcagtgatag chrII:11534525-11540624 24 3716 3739 ggtggtttttctctgcagtgatag + 0 mmmmmmmmmmmmmmmmmmmmmmmm +seq_378065_x1 23 1 23 tcaccgggtgaaaattcgcatgg chrII:11534525-11540624 23 3165 3187 tcaccgggtgaaaattcgcatgg + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_378066_x1 23 1 23 ggtggtttttctctgcagcgata chrII:11534525-11540624 23 3716 3738 ggtggtttttctctgcagtgata + 1 mmmmmmmmmmmmmmmmmmMmmmm +seq_378068_x1 26 1 26 tcaccgggtgaacacttgcagtggtc chrII:11534525-11540624 26 3285 3310 tcaccgggtgaacacttgcagtggtc + 0 mmmmmmmmmmmmmmmmmmmmmmmmmm +seq_378075_x1 22 1 22 tcaccgggagaaaaactggagt chrII:11534525-11540624 22 3382 3403 tcaccgggagaaaaactggagt + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_378078_x1 24 1 24 tcaccgggtggaaactagcagtgg chrII:11534525-11540624 24 3060 3083 tcaccgggtggaaactagcagtgg + 0 mmmmmmmmmmmmmmmmmmmmmmmm +seq_378079_x1 23 1 23 atcaccgggtggaaactagcagt chrII:11534525-11540624 23 3059 3081 atcaccgggtggaaactagcagt + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_378081_x1 24 1 24 tcaccgggtgaacacttgcagtag chrII:11534525-11540624 24 3285 3308 tcaccgggtgaacacttgcagtgg + 1 mmmmmmmmmmmmmmmmmmmmmmMm +seq_378083_x1 19 1 19 ccgggtgaaaaatcaccta chrII:11534525-11540624 19 3763 3781 ccgggtgaaaaatcaccta + 0 mmmmmmmmmmmmmmmmmmm +seq_378089_x1 19 1 19 gggagcagaacgaaaaggg chrII:11534525-11540624 19 366 384 gggagcagaacgaaaaggg - 0 mmmmmmmmmmmmmmmmmmm +seq_378089_x1 19 1 19 gggagcagaacgaaaaggg chrII:11534525-11540624 19 29 47 gggagcagaacgaaaaggg + 0 mmmmmmmmmmmmmmmmmmm +seq_378093_x1 24 1 24 tcaccgggtggaaactagcagtgg chrII:11534525-11540624 24 3060 3083 tcaccgggtggaaactagcagtgg + 0 mmmmmmmmmmmmmmmmmmmmmmmm +seq_378105_x1 18 1 18 tgtgggtgtccgttgcgg chrII:11534525-11540624 18 3246 3263 tgtgggtgtccgttgcgg + 0 mmmmmmmmmmmmmmmmmm +seq_378113_x1 26 1 26 tcaccgggtggaaactagcagtggat chrII:11534525-11540624 26 3060 3085 tcaccgggtggaaactagcagtggct + 1 mmmmmmmmmmmmmmmmmmmmmmmmMm +seq_378115_x1 21 1 21 atcaccgggtggaaactagca chrII:11534525-11540624 21 3059 3079 atcaccgggtggaaactagca + 0 mmmmmmmmmmmmmmmmmmmmm +seq_378119_x1 20 1 20 accgggtgaaaattcgcacg chrII:11534525-11540624 20 3167 3186 accgggtgaaaattcgcatg + 1 mmmmmmmmmmmmmmmmmmMm +seq_378120_x1 19 1 19 tcaccgggtgtaaatcagc chrII:11534525-11540624 19 3535 3553 tcaccgggtgtaaatcagc + 0 mmmmmmmmmmmmmmmmmmm +seq_378126_x1 22 1 22 agtggatgtatgccatgatgat chrII:11534525-11540624 22 3591 3612 agtggatgtatgccatgatgat + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_378127_x1 22 1 22 tcaccgggtgtaaatcagcctg chrII:11534525-11540624 22 3535 3556 tcaccgggtgtaaatcagcttg + 1 mmmmmmmmmmmmmmmmmmmMmm +seq_378129_x1 24 1 24 tcaccgggtgtacatcagctaaag chrII:11534525-11540624 24 3631 3654 tcaccgggtgtacatcagctaagg + 1 mmmmmmmmmmmmmmmmmmmmmmMm +seq_378131_x1 23 1 23 ggtggtttttctctgcagtgata chrII:11534525-11540624 23 3716 3738 ggtggtttttctctgcagtgata + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_378133_x1 25 1 25 tcaccgggtggaaactagcagtcgc chrII:11534525-11540624 25 3060 3084 tcaccgggtggaaactagcagtggc + 1 mmmmmmmmmmmmmmmmmmmmmmMmm +seq_378135_x1 24 1 24 tcaccgggtggaaactagcagagg chrII:11534525-11540624 24 3060 3083 tcaccgggtggaaactagcagtgg + 1 mmmmmmmmmmmmmmmmmmmmmMmm +seq_378143_x1 23 1 23 cgaaaaggggagcaacgaaaagg chrII:11534525-11540624 23 99 121 cgaaaaggggagcaacgaaaagg + 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_378143_x1 23 1 23 cgaaaaggggagcaacgaaaagg chrII:11534525-11540624 23 292 314 cgaaaaggggagcaacgaaaagg - 0 mmmmmmmmmmmmmmmmmmmmmmm +seq_378145_x1 18 1 18 accgggtgaaaattcgca chrII:11534525-11540624 18 3167 3184 accgggtgaaaattcgca + 0 mmmmmmmmmmmmmmmmmm +seq_378154_x1 21 1 21 tgtgggtgtccgttgcggtgc chrII:11534525-11540624 21 3246 3266 tgtgggtgtccgttgcggtgc + 0 mmmmmmmmmmmmmmmmmmmmm +seq_378157_x1 24 1 24 tcaccgggagaaaaactggagttg chrII:11534525-11540624 24 3382 3405 tcaccgggagaaaaactggagtag + 1 mmmmmmmmmmmmmmmmmmmmmmMm +seq_378158_x1 21 1 21 cgaaaaggggagcaacgaaaa chrII:11534525-11540624 21 294 314 cgaaaaggggagcaacgaaaa - 0 mmmmmmmmmmmmmmmmmmmmm +seq_378158_x1 21 1 21 cgaaaaggggagcaacgaaaa chrII:11534525-11540624 21 99 119 cgaaaaggggagcaacgaaaa + 0 mmmmmmmmmmmmmmmmmmmmm +seq_378166_x1 21 1 21 tcaccgggtgtacatcagcca chrII:11534525-11540624 21 3631 3651 tcaccgggtgtacatcagcta + 1 mmmmmmmmmmmmmmmmmmmMm +seq_378167_x1 27 1 27 tcaccgggtggaaactagcagtcgctc chrII:11534525-11540624 27 3060 3086 tcaccgggtggaaactagcagtggctc + 1 mmmmmmmmmmmmmmmmmmmmmmMmmmm +seq_378170_x1 23 1 23 cgccaattttcgcttcagcgcta chrII:11534525-11540624 23 3124 3146 cgccaattttcgcttcagtgcta + 1 mmmmmmmmmmmmmmmmmmMmmmm +seq_378173_x1 25 1 25 gtggatgtatgccatgatgataaga chrII:11534525-11540624 25 3592 3616 gtggatgtatgccatgatgataaga + 0 mmmmmmmmmmmmmmmmmmmmmmmmm +seq_378174_x1 22 1 22 tcaccgggagaaaaactggggt chrII:11534525-11540624 22 3382 3403 tcaccgggagaaaaactggagt + 1 mmmmmmmmmmmmmmmmmmmMmm +seq_378175_x1 27 1 27 tcaccgggtggaaactagcagtggttc chrII:11534525-11540624 27 3060 3086 tcaccgggtggaaactagcagtggctc + 1 mmmmmmmmmmmmmmmmmmmmmmmmMmm +seq_378176_x1 23 1 23 cgaaaaggggatctgcaaaaatg chrII:11534525-11540624 23 352 374 cgaaaaggggatctgcaaaaacg - 1 mmmmmmmmmmmmmmmmmmmmmMm +seq_378176_x1 23 1 23 cgaaaaggggatctgcaaaaatg chrII:11534525-11540624 23 39 61 cgaaaaggggatctgcaaaaagg + 1 mmmmmmmmmmmmmmmmmmmmmMm +seq_378179_x1 20 1 20 accgggtgtaaatcagctng chrII:11534525-11540624 20 3537 3556 accgggtgtaaatcagcttg + 1 mmmmmmmmmmmmmmmmmmMm +seq_378180_x1 21 1 21 caccgggtggaaactagcggt chrII:11534525-11540624 21 3061 3081 caccgggtggaaactagcagt + 1 mmmmmmmmmmmmmmmmmmMmm +seq_378187_x1 18 1 18 ggggatctgcaaaaaggg chrII:11534525-11540624 18 351 368 ggggatctgcaaaaaggg - 0 mmmmmmmmmmmmmmmmmm +seq_378187_x1 18 1 18 ggggatctgcaaaaaggg chrII:11534525-11540624 18 45 62 ggggatctgcaaaaaggg + 0 mmmmmmmmmmmmmmmmmm +seq_378194_x1 26 1 26 tcaccgggtggaaactagcagtggct chrII:11534525-11540624 26 3060 3085 tcaccgggtggaaactagcagtggct + 0 mmmmmmmmmmmmmmmmmmmmmmmmmm +seq_378195_x1 22 1 22 caccgggtgaacacttgcagtg chrII:11534525-11540624 22 3286 3307 caccgggtgaacacttgcagtg + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_378198_x1 21 1 21 tcaccgggtgtacatcaggta chrII:11534525-11540624 21 3631 3651 tcaccgggtgtacatcagcta + 1 mmmmmmmmmmmmmmmmmmMmm +seq_378200_x1 23 1 23 tgtgggtgtccgttgcggtgcga chrII:11534525-11540624 23 3246 3268 tgtgggtgtccgttgcggtgcta + 1 mmmmmmmmmmmmmmmmmmmmmMm +seq_378204_x1 21 1 21 ggggagcagaacgaaaagggg chrII:11534525-11540624 21 365 385 ggggagcagaacgaaaagggg - 0 mmmmmmmmmmmmmmmmmmmmm +seq_378204_x1 21 1 21 ggggagcagaacgaaaagggg chrII:11534525-11540624 21 28 48 ggggagcagaacgaaaagggg + 0 mmmmmmmmmmmmmmmmmmmmm +seq_378205_x1 20 1 20 tcaccgggtgaacacttgta chrII:11534525-11540624 20 3285 3304 tcaccgggtgaacacttgca + 1 mmmmmmmmmmmmmmmmmmMm +seq_378209_x1 19 1 19 accgggagaaaaactggag chrII:11534525-11540624 19 3384 3402 accgggagaaaaactggag + 0 mmmmmmmmmmmmmmmmmmm +seq_378210_x1 22 1 22 tatcaccgggtgaacacttgca chrII:11534525-11540624 22 3283 3304 tatcaccgggtgaacacttgca + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_378212_x1 23 1 23 tcaccgggtggaaactagcaatg chrII:11534525-11540624 23 3060 3082 tcaccgggtggaaactagcagtg + 1 mmmmmmmmmmmmmmmmmmmmMmm +seq_378215_x1 22 1 22 tcaccgggagaaaaactgnagt chrII:11534525-11540624 22 3382 3403 tcaccgggagaaaaactggagt + 1 mmmmmmmmmmmmmmmmmmMmmm +seq_378218_x1 23 1 23 tcaccgggtggaaactagcagcg chrII:11534525-11540624 23 3060 3082 tcaccgggtggaaactagcagtg + 1 mmmmmmmmmmmmmmmmmmmmmMm +seq_378219_x1 22 1 22 accgggtgtaaatcagcttgtc chrII:11534525-11540624 22 3537 3558 accgggtgtaaatcagcttggc + 1 mmmmmmmmmmmmmmmmmmmmMm +seq_378228_x1 22 1 22 agctgatttcgtcttggtaata chrII:11534525-11540624 22 3495 3516 agctgatttcgtcttggtaata + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_378230_x1 23 1 23 atcaccgggtgaacacttgcggt chrII:11534525-11540624 23 3284 3306 atcaccgggtgaacacttgcagt + 1 mmmmmmmmmmmmmmmmmmmmMmm +seq_378231_x1 20 1 20 tcaccgggtgtacatcaggt chrII:11534525-11540624 20 3631 3650 tcaccgggtgtacatcagct + 1 mmmmmmmmmmmmmmmmmmMm +seq_378239_x1 22 1 22 gaaaaggggagcagaacgaaaa chrII:11534525-11540624 22 23 44 gaaaaggggagcagaacgaaaa + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_378245_x1 22 1 22 aagagaatagaaccgacgatat chrII:11534525-11540624 22 4274 4295 aagagaatagaaccgacgatat + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_378246_x1 25 1 25 tcaccgggtgaacacttgcagtgtt chrII:11534525-11540624 25 3285 3309 tcaccgggtgaacacttgcagtggt + 1 mmmmmmmmmmmmmmmmmmmmmmmMm +seq_378247_x1 20 1 20 accgggtggaaactagcaat chrII:11534525-11540624 20 3062 3081 accgggtggaaactagcagt + 1 mmmmmmmmmmmmmmmmmmMm +seq_378249_x1 22 1 22 tcaccgggtgaaaaatcatcta chrII:11534525-11540624 22 3760 3781 tcaccgggtgaaaaatcaccta + 1 mmmmmmmmmmmmmmmmmmMmmm +seq_378250_x1 23 1 23 caccgggtgaacacttgcagttg chrII:11534525-11540624 23 3286 3308 caccgggtgaacacttgcagtgg + 1 mmmmmmmmmmmmmmmmmmmmmMm +seq_378261_x1 25 1 25 tcaccgggtgaacacttgcagtggt chrII:11534525-11540624 25 3285 3309 tcaccgggtgaacacttgcagtggt + 0 mmmmmmmmmmmmmmmmmmmmmmmmm +seq_378267_x1 19 1 19 accgggtgtacatcagcta chrII:11534525-11540624 19 3633 3651 accgggtgtacatcagcta + 0 mmmmmmmmmmmmmmmmmmm +seq_378273_x1 20 1 20 tgtgggtgtccgttgcggtg chrII:11534525-11540624 20 3246 3265 tgtgggtgtccgttgcggtg + 0 mmmmmmmmmmmmmmmmmmmm +seq_378276_x1 24 1 24 tcaccgggtgaacacttgcagttg chrII:11534525-11540624 24 3285 3308 tcaccgggtgaacacttgcagtgg + 1 mmmmmmmmmmmmmmmmmmmmmmMm +seq_378278_x1 22 1 22 atcaccgggtgtacatcaccta chrII:11534525-11540624 22 3630 3651 atcaccgggtgtacatcagcta + 1 mmmmmmmmmmmmmmmmmmMmmm +seq_378285_x1 22 1 22 aacgaaaaggggatctggcact chrII:11534525-11540624 22 112 133 aacgaaaaggggatctggcact + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_378290_x1 22 1 22 agctgatttcgtcttggtagta chrII:11534525-11540624 22 3495 3516 agctgatttcgtcttggtaata + 1 mmmmmmmmmmmmmmmmmmmMmm +seq_378291_x1 24 1 24 tcaccgggtgtacatcagctaagg chrII:11534525-11540624 24 3631 3654 tcaccgggtgtacatcagctaagg + 0 mmmmmmmmmmmmmmmmmmmmmmmm +seq_378303_x1 22 1 22 caccgggtgaacacttgcagtg chrII:11534525-11540624 22 3286 3307 caccgggtgaacacttgcagtg + 0 mmmmmmmmmmmmmmmmmmmmmm +seq_378310_x1 20 1 20 tcaccgggtgtacatcagct chrII:11534525-11540624 20 3631 3650 tcaccgggtgtacatcagct + 0 mmmmmmmmmmmmmmmmmmmm +seq_378311_x1 18 1 18 ccgggtgtacatcagcta chrII:11534525-11540624 18 3634 3651 ccgggtgtacatcagcta + 0 mmmmmmmmmmmmmmmmmm +seq_378312_x1 25 1 25 agtgtgggtgtccgttgcggtgcta chrII:11534525-11540624 25 3244 3268 agtgtgggtgtccgttgcggtgcta + 0 mmmmmmmmmmmmmmmmmmmmmmmmm +seq_378315_x1 23 1 23 tgtgggtgtccgttgcggcgcta chrII:11534525-11540624 23 3246 3268 tgtgggtgtccgttgcggtgcta + 1 mmmmmmmmmmmmmmmmmmMmmmm +seq_378319_x1 23 1 23 tcaccgggtggaaactagnagtg chrII:11534525-11540624 23 3060 3082 tcaccgggtggaaactagcagtg + 1 mmmmmmmmmmmmmmmmmmMmmmm +seq_378320_x1 22 1 22 atcaccgggtgaaaaatcacat chrII:11534525-11540624 22 3759 3780 atcaccgggtgaaaaatcacct + 1 mmmmmmmmmmmmmmmmmmmmMm +seq_378322_x1 23 1 23 tgtgggtgtccgttgcggtgata chrII:11534525-11540624 23 3246 3268 tgtgggtgtccgttgcggtgcta + 1 mmmmmmmmmmmmmmmmmmmmMmm +seq_378323_x1 23 1 23 atcaccgggtggaaactagaagt chrII:11534525-11540624 23 3059 3081 atcaccgggtggaaactagcagt + 1 mmmmmmmmmmmmmmmmmmmMmmm +seq_378327_x1 20 1 20 tcaccgggtgaacacttgaa chrII:11534525-11540624 20 3285 3304 tcaccgggtgaacacttgca + 1 mmmmmmmmmmmmmmmmmmMm +seq_378329_x1 23 1 23 ccgggtggaaactagcagtggct chrII:11534525-11540624 23 3063 3085 ccgggtggaaactagcagtggct + 0 mmmmmmmmmmmmmmmmmmmmmmm
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/result.bed Mon Jan 26 09:56:49 2015 -0500 @@ -0,0 +1,8 @@ +chrII:11534525-11540624 3020 3081 novel:chrII:11534525-11540624_7 102170.8 + 3020 3081 255,0,0 +chrII:11534525-11540624 3245 3306 known:chrII:11534525-11540624_11 61011.7 + 3245 3306 255,0,0 +chrII:11534525-11540624 3590 3652 known:chrII:11534525-11540624_17 17007.3 + 3590 3652 255,0,0 +chrII:11534525-11540624 3123 3186 known:chrII:11534525-11540624_9 7482.8 + 3123 3186 255,0,0 +chrII:11534525-11540624 3494 3556 known:chrII:11534525-11540624_15 1978.6 + 3494 3556 255,0,0 +chrII:11534525-11540624 3715 3781 known:chrII:11534525-11540624_19 84.4 + 3715 3781 255,0,0 +chrII:11534525-11540624 3340 3403 known:chrII:11534525-11540624_13 5.5 + 3340 3403 255,0,0 +chrII:11534525-11540624 3284 3362 known:chrII:11534525-11540624_12 -0.2 + 3284 3362 255,0,0
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/result.csv Mon Jan 26 09:56:49 2015 -0500 @@ -0,0 +1,44 @@ +miRDeep2 score novel miRNAs reported by miRDeep2 novel miRNAs, estimated false positives novel miRNAs, estimated true positives known miRNAs in species known miRNAs in data known miRNAs detected by miRDeep2 estimated signal-to-noise excision gearing +10 1 0 +/- 0 1 +/- 0 (83 +/- 38%) 7 6 5 (83%) 6.7 1 +9 1 0 +/- 0 1 +/- 0 (83 +/- 38%) 7 6 5 (83%) 6.7 1 +8 1 0 +/- 0 1 +/- 0 (83 +/- 38%) 7 6 5 (83%) 6.7 1 +7 1 0 +/- 0 1 +/- 0 (83 +/- 38%) 7 6 5 (83%) 6.7 1 +6 1 0 +/- 0 1 +/- 0 (83 +/- 38%) 7 6 5 (83%) 6.7 1 +5 1 0 +/- 0 1 +/- 0 (71 +/- 46%) 7 6 6 (100%) 4.5 1 +4 1 0 +/- 0 1 +/- 0 (71 +/- 46%) 7 6 6 (100%) 4.5 1 +3 1 0 +/- 0 1 +/- 0 (71 +/- 46%) 7 6 6 (100%) 4.5 1 +2 1 0 +/- 0 1 +/- 0 (71 +/- 46%) 7 6 6 (100%) 4.5 1 +1 1 0 +/- 0 1 +/- 0 (68 +/- 47%) 7 6 6 (100%) 4 1 +0 1 1 +/- 1 1 +/- 1 (52 +/- 50%) 7 6 6 (100%) 2.2 1 +-1 1 1 +/- 1 1 +/- 1 (52 +/- 50%) 7 6 6 (100%) 2.5 1 +-2 1 1 +/- 1 0 +/- 0 (15 +/- 36%) 7 6 6 (100%) 1.9 1 +-3 1 1 +/- 1 0 +/- 0 (15 +/- 36%) 7 6 6 (100%) 1.9 1 +-4 1 1 +/- 1 0 +/- 0 (13 +/- 34%) 7 6 6 (100%) 1.8 1 +-5 1 2 +/- 1 0 +/- 0 (6 +/- 24%) 7 6 6 (100%) 1.7 1 +-6 1 3 +/- 1 0 +/- 0 (0 +/- 0%) 7 6 6 (100%) 1.5 1 +-7 1 3 +/- 1 0 +/- 0 (0 +/- 0%) 7 6 6 (100%) 1.5 1 +-8 1 3 +/- 1 0 +/- 0 (0 +/- 0%) 7 6 6 (100%) 1.5 1 +-9 1 3 +/- 1 0 +/- 0 (0 +/- 0%) 7 6 6 (100%) 1.5 1 +-10 1 3 +/- 1 0 +/- 0 (0 +/- 0%) 7 6 6 (100%) 1.5 1 + + + +novel miRNAs predicted by miRDeep2 +provisional id miRDeep2 score estimated probability that the miRNA candidate is a true positive rfam alert total read count mature read count loop read count star read count significant randfold p-value miRBase miRNA example miRBase miRNA with the same seed UCSC browser NCBI blastn consensus mature sequence consensus star sequence consensus precursor sequence precursor coordinate +chrII:11534525-11540624_7 102170.8 83 +/- 38% - 200394 200381 0 13 yes - cbr-miR-35 - - ucaccggguggaaacuagcagu ugcugguuucuuccacaguggua ugcugguuucuuccacagugguacuuuccauuagaacuaucaccggguggaaacuagcagu chrII:11534525-11540624:3020..3081:+ + + + +mature miRBase miRNAs detected by miRDeep2 +tag id miRDeep2 score estimated probability that the miRNA is a true positive rfam alert total read count mature read count loop read count star read count significant randfold p-value mature miRBase miRNA example miRBase miRNA with the same seed UCSC browser NCBI blastn consensus mature sequence consensus star sequence consensus precursor sequence precursor coordinate +chrII:11534525-11540624_11 61011.7 83 +/- 38% - 119663 119545 0 118 yes cel-miR-37 cbr-miR-35 - - ucaccgggugaacacuugcagu uguggguguccguugcggugcua uguggguguccguugcggugcuacauucucuaaucuguaucaccgggugaacacuugcagu chrII:11534525-11540624:3245..3306:+ +chrII:11534525-11540624_17 17007.3 83 +/- 38% - 33350 33300 0 50 yes cel-miR-40 cbr-miR-35 - - ucaccggguguacaucagcuaa aguggauguaugccaugaugaua aguggauguaugccaugaugauaagauaucagaaauccuaucaccggguguacaucagcuaa chrII:11534525-11540624:3590..3652:+ +chrII:11534525-11540624_9 7482.8 83 +/- 38% - 14668 14617 0 51 yes cel-miR-36 cbr-miR-35 - - ucaccgggugaaaauucgcaug cgccaauuuucgcuucagugcua cgccaauuuucgcuucagugcuagaccauccaaagugucuaucaccgggugaaaauucgcaug chrII:11534525-11540624:3123..3186:+ +chrII:11534525-11540624_15 1978.6 83 +/- 38% - 3872 3014 1 857 yes cel-miR-39 cbr-miR-35 - - ucaccggguguaaaucagcuug agcugauuucgucuugguaaua agcugauuucgucuugguaauaagcucgucauugagauuaucaccggguguaaaucagcuug chrII:11534525-11540624:3494..3556:+ +chrII:11534525-11540624_19 84.4 83 +/- 38% - 164 68 9 87 yes cel-miR-41 - - - ggugguuuuucucugcagugaua ucaccgggugaaaaaucaccua ggugguuuuucucugcagugauagauacuucuaacaacucgcuaucaccgggugaaaaaucaccua chrII:11534525-11540624:3715..3781:+ +chrII:11534525-11540624_13 5.5 71 +/- 46% - 2140 2132 8 0 yes cel-miR-38 cbr-miR-35 - - ucaccgggagaaaaacuggagu uccgguuuuuuccguggugaua uccgguuuuuuccguggugauaacgcauccaaaagucucuaucaccgggagaaaaacuggagu chrII:11534525-11540624:3340..3403:+ +chrII:11534525-11540624_12 -0.2 52 +/- 50% - 119546 119545 1 0 no cel-miR-37 cbr-miR-35 - - ucaccgggugaacacuugcagu uguuccgguuuuuuccguggugaua ucaccgggugaacacuugcagugguccucgugguuucucugugagccagguccuguuccgguuuuuuccguggugaua chrII:11534525-11540624:3284..3362:+ + +#miRBase miRNAs not detected by miRDeep2 +miRBase precursor id total read count mature read count(s) star read count remaining reads UCSC browser NCBI blastn miRBase mature sequence(s) miRBase star sequence(s) miRBase precursor sequence +4000 4000 0 0 - - aaugacacugguuaucuuuuccaucg - cgccggcaaugacacugguuaucuuuuccaucguggaaugccccccauugauuuuuuccccuuuucggggggaaaaaauuggaaacgagaaagguaucgggugucauagccggcg
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/survey.csv Mon Jan 26 09:56:49 2015 -0500 @@ -0,0 +1,22 @@ +miRDeep2 score novel miRNAs reported by miRDeep2 novel miRNAs, estimated false positives novel miRNAs, estimated true positives known miRNAs in species known miRNAs in data known miRNAs detected by miRDeep2 estimated signal-to-noise excision gearing +10 1 0 +/- 0 1 +/- 0 (83 +/- 38%) 7 6 5 (83%) 6.7 1 +9 1 0 +/- 0 1 +/- 0 (83 +/- 38%) 7 6 5 (83%) 6.7 1 +8 1 0 +/- 0 1 +/- 0 (83 +/- 38%) 7 6 5 (83%) 6.7 1 +7 1 0 +/- 0 1 +/- 0 (83 +/- 38%) 7 6 5 (83%) 6.7 1 +6 1 0 +/- 0 1 +/- 0 (83 +/- 38%) 7 6 5 (83%) 6.7 1 +5 1 0 +/- 0 1 +/- 0 (71 +/- 46%) 7 6 6 (100%) 4.5 1 +4 1 0 +/- 0 1 +/- 0 (71 +/- 46%) 7 6 6 (100%) 4.5 1 +3 1 0 +/- 0 1 +/- 0 (71 +/- 46%) 7 6 6 (100%) 4.5 1 +2 1 0 +/- 0 1 +/- 0 (71 +/- 46%) 7 6 6 (100%) 4.5 1 +1 1 0 +/- 0 1 +/- 0 (68 +/- 47%) 7 6 6 (100%) 4 1 +0 1 1 +/- 1 1 +/- 1 (52 +/- 50%) 7 6 6 (100%) 2.2 1 +-1 1 1 +/- 1 1 +/- 1 (52 +/- 50%) 7 6 6 (100%) 2.5 1 +-2 1 1 +/- 1 0 +/- 0 (15 +/- 36%) 7 6 6 (100%) 1.9 1 +-3 1 1 +/- 1 0 +/- 0 (15 +/- 36%) 7 6 6 (100%) 1.9 1 +-4 1 1 +/- 1 0 +/- 0 (13 +/- 34%) 7 6 6 (100%) 1.8 1 +-5 1 2 +/- 1 0 +/- 0 (6 +/- 24%) 7 6 6 (100%) 1.7 1 +-6 1 3 +/- 1 0 +/- 0 (0 +/- 0%) 7 6 6 (100%) 1.5 1 +-7 1 3 +/- 1 0 +/- 0 (0 +/- 0%) 7 6 6 (100%) 1.5 1 +-8 1 3 +/- 1 0 +/- 0 (0 +/- 0%) 7 6 6 (100%) 1.5 1 +-9 1 3 +/- 1 0 +/- 0 (0 +/- 0%) 7 6 6 (100%) 1.5 1 +-10 1 3 +/- 1 0 +/- 0 (0 +/- 0%) 7 6 6 (100%) 1.5 1
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Mon Jan 26 09:56:49 2015 -0500 @@ -0,0 +1,40 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="perl" version="5.18.1"> + <repository changeset_revision="a1a111b9faa5" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="bowtie" version="0.12.7"> + <repository changeset_revision="f54826948b0b" name="package_bowtie_0_12_7" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="vienna_rna" version="1.8.5"> + <repository changeset_revision="263ded3da06c" name="package_vienna_rna_1_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="pdf_api2" version="2.023"> + <repository changeset_revision="356e5d565b9f" name="package_perl_pdf_api2_2_023" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="randfold" version="2.0"> + <repository changeset_revision="d44a316336e5" name="package_randfold_2_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="mirdeep2_quantifier" version="2.0"> + <repository changeset_revision="f3fa4faa3ab3" name="mirdeep2_quantifier" owner="rnateam" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="mirdeep2" version="2.0"> + <install version="1.0"> + <actions> + <action type="download_by_url">https://raw.githubusercontent.com/bgruening/download_store/master/miRDeep2/miRDeep2.tar.gz</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme> + +MiRDeep2 is a software package for identification of novel and known miRNAs in deep sequencing data. Furthermore, it can be used for miRNA expression profiling across samples. + + </readme> + </package> +</tool_dependency>