Mercurial > repos > rnateam > compalignp

diff compalignp.xml @ 8:8ebf2202a0d1 draft default tip

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author rnateam
date Mon, 08 Jun 2015 08:31:57 -0400
parents eeedd1755f92
children
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--- a/compalignp.xml	Fri Jun 05 06:10:48 2015 -0400
+++ b/compalignp.xml	Mon Jun 08 08:31:57 2015 -0400
@@ -12,14 +12,12 @@
     compalignp
         -t $rna_alignment_target
         -r $rna_alignment_reference
-        $flag_verbose
     > $output
 ]]>
     </command>
     <inputs>
-        <param format="stockholm" name="rna_alignment_target" type="data" label="Target RNA Alignment" help="(-t)" />
-        <param format="stockholm" name="rna_alignment_reference" type="data" label="Reference RNA Alignment" help="(-r)" />
-        <param name="flag_verbose" type="boolean" truevalue="-v" falsevalue="" label="Verbose output" help="(-v)" />
+        <param format="clustalw,stockholm" name="rna_alignment_target" type="data" label="Target RNA Alignment" help="(-t)" />
+        <param format="clustalw,stockholm" name="rna_alignment_reference" type="data" label="Reference RNA Alignment" help="(-r)" />
     </inputs>
     <outputs>
         <data name="output" format="txt" />