Mercurial > repos > rnateam > chipseeker
changeset 4:4fbd735886dd draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 853e74181667ce9ac6a0c91d4a2b204c0b3fda06
| author | rnateam |
|---|---|
| date | Tue, 04 Dec 2018 10:02:01 -0500 |
| parents | a6d072a82158 |
| children | 3ff6333973aa |
| files | chipseeker.xml |
| diffstat | 1 files changed, 11 insertions(+), 2 deletions(-) [+] |
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--- a/chipseeker.xml Mon Nov 26 06:55:03 2018 -0500 +++ b/chipseeker.xml Tue Dec 04 10:02:01 2018 -0500 @@ -1,4 +1,4 @@ -<tool id="chipseeker" name="ChIPseeker" version="1.16.1"> +<tool id="chipseeker" name="ChIPseeker" version="1.16.2"> <description>for ChIP peak annotation and visualization</description> <requirements> <requirement type="package" version="1.16.1">bioconductor-chipseeker</requirement> @@ -30,7 +30,9 @@ -D $adv.flankgenedist #end if -f $format - -p $pdf + #if $pdf: + -p $pdf + #end if -r $rdata ]]> </command> @@ -142,6 +144,13 @@ <output name="out_tab" ftype="tabular" file="outflank.tab" /> <output name="out_plots" file="out.pdf" compare="sim_size"/> </test> + <!-- Ensure the tool works when no plots are outputed --> + <test expect_num_outputs="1"> + <param name="peaks" value="in.interval" ftype="interval"/> + <param name="gtf_source_select" value="cached"/> + <param name="pdf" value=""/> + <output name="out_tab" ftype="interval" file="outint.int" /> + </test> </tests> <help><![CDATA[