Mercurial > repos > rnateam > blockclust
comparison tool_dependencies.xml @ 8:762937a63301 draft
Uploaded
| author | rnateam |
|---|---|
| date | Tue, 22 Oct 2013 13:32:07 -0400 |
| parents | a2aed24f5846 |
| children | 171f6015180f |
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| 7:a2aed24f5846 | 8:762937a63301 |
|---|---|
| 3 <package name="samtools" version="0.1.19"> | 3 <package name="samtools" version="0.1.19"> |
| 4 <repository changeset_revision="54195f1d4b0f" name="package_samtools_0_1_19" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" /> | 4 <repository changeset_revision="54195f1d4b0f" name="package_samtools_0_1_19" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" /> |
| 5 </package> | 5 </package> |
| 6 <package name="R_3_0_1" version="3.0.1"> | 6 <package name="R_3_0_1" version="3.0.1"> |
| 7 <repository changeset_revision="e16e08f41ed7" name="package_r_3_0_1" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" /> | 7 <repository changeset_revision="e16e08f41ed7" name="package_r_3_0_1" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" /> |
| 8 </package> | |
| 9 <package name="blockclust_rlibs" version="1.0"> | |
| 10 <action type="setup_r_environment"> | |
| 11 <repository changeset_revision="e16e08f41ed7" name="package_r_3_0_1" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> | |
| 12 <package name="R_3_0_1" version="3.0.1" /> | |
| 13 </repository> | |
| 14 <package>http://cran.r-project.org/src/contrib/ggplot2_0.9.3.1.tar.gz</package> | |
| 15 <package>http://cran.r-project.org/src/contrib/ape_3.0-11.tar.gz</package> | |
| 16 </action> | |
| 8 </package> | 17 </package> |
| 9 <package name="blockclust" version="1.0"> | 18 <package name="blockclust" version="1.0"> |
| 10 <install version="1.0"> | 19 <install version="1.0"> |
| 11 <actions> | 20 <actions> |
| 12 <action type="download_by_url">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-1.0.tar.gz</action> | 21 <action type="download_by_url">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-1.0.tar.gz</action> |
| 44 <action type="shell_command">tar xfvz rheMac3.tar.gz -C $INSTALL_DIR/data/annotations/</action> | 53 <action type="shell_command">tar xfvz rheMac3.tar.gz -C $INSTALL_DIR/data/annotations/</action> |
| 45 <action type="set_environment"> | 54 <action type="set_environment"> |
| 46 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | 55 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> |
| 47 <environment_variable action="prepend_to" name="BLOCKCLUST_DATA_PATH">$INSTALL_DIR/data</environment_variable> | 56 <environment_variable action="prepend_to" name="BLOCKCLUST_DATA_PATH">$INSTALL_DIR/data</environment_variable> |
| 48 </action> | 57 </action> |
| 49 <action type="setup_r_environment"> | |
| 50 <repository changeset_revision="e16e08f41ed7" name="package_r_3_0_1" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> | |
| 51 <package name="R_3_0_1" version="3.0.1" /> | |
| 52 </repository> | |
| 53 <r_package>http://cran.r-project.org/src/contrib/ggplot2_0.9.3.1.tar.gz</r_package> | |
| 54 <r_package>http://cran.r-project.org/src/contrib/ape_3.0-11.tar.gz</r_package> | |
| 55 </action> | |
| 56 <action type="set_environment"> | |
| 57 <environment_variable action="append_to" name="R_LIBS">$INSTALL_DIR</environment_variable> | |
| 58 </action> | |
| 59 </actions> | 58 </actions> |
| 60 </install> | 59 </install> |
| 61 <readme> | 60 <readme> |
| 62 | 61 |
| 63 </readme> | 62 </readme> |