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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="blockclust" version="1.0">
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4 <install version="1.0">
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5 <actions>
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6 <action type="download_by_url">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-1.0.tar.gz</action>
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7 <action type="shell_command">make</action>
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8 <action type="move_file">
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9 <source>BlockClust</source>
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10 <destination>$INSTALL_DIR/bin</destination>
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11 </action>
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12 <action type="move_file">
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13 <source>BlockClustPipeLine.pl</source>
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14 <destination>$INSTALL_DIR/bin</destination>
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15 </action>
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16 <action type="move_file">
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17 <source>blockclust.config</source>
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18 <destination>$INSTALL_DIR/data/</destination>
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19 </action>
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20 <action type="make_directory">$INSTALL_DIR/data/annotations</action>
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21 <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/dm3.tar.gz</action>
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22 <action type="shell_command">tar xfvz dm3.tar.gz -C $INSTALL_DIR/data/annotations/</action>
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23 <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/hg19.tar.gz</action>
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24 <action type="shell_command">tar xfvz hg19.tar.gz -C $INSTALL_DIR/data/annotations/</action>
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25 <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/mm10.tar.gz</action>
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26 <action type="shell_command">tar xfvz mm10.tar.gz -C $INSTALL_DIR/data/annotations/</action>
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27 <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/panTro4.tar.gz</action>
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28 <action type="shell_command">tar xfvz panTro4.tar.gz -C $INSTALL_DIR/data/annotations/</action>
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29 <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/rheMac3.tar.gz</action>
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30 <action type="shell_command">tar xfvz rheMac3.tar.gz -C $INSTALL_DIR/data/annotations/</action>
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31 <action type="set_environment">
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32 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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33 <environment_variable name="BLOCKCLUST_DATA_PATH" action="prepend_to">$INSTALL_DIR/data</environment_variable>
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34 </action>
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35 </actions>
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36 </install>
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37 <readme>
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38
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39 </readme>
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40 </package>
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41 </tool_dependency>
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