Mercurial > repos > rnateam > blockbuster
changeset 1:bfaa2f0d9515 draft
Uploaded
| author | rnateam |
|---|---|
| date | Thu, 23 Jan 2014 06:10:10 -0500 |
| parents | 2f9d4b518b03 |
| children | f141f485e0e2 |
| files | blockbuster.xml |
| diffstat | 1 files changed, 10 insertions(+), 11 deletions(-) [+] |
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--- a/blockbuster.xml Thu Oct 17 04:33:30 2013 -0400 +++ b/blockbuster.xml Thu Jan 23 06:10:10 2014 -0500 @@ -17,16 +17,16 @@ > $output </command> <inputs> - <param name="input" type="data" format="fasta" label="Fasta file of sequeces" help="-input" /> - <param name="distance" type="integer" value="30" size="5" label="minimum distance between two clusters" help="-distance" /> - <param name="minClusterHeight" type="float" value="10" size="5" label="minimum height (readno) of a cluster" help="-minClusterHeight" /> - <param name="minBlockHeight" type="float" value="2" size="5" label="minimum height (readno) of a block" help="-minBlockHeight" /> - <param name="scale" type="float" value="0.4" size="5" label="scale stddev for a single read" help="-scale" /> - <param name="merge" type="integer" value="0" size="5" label="merge reads with almost similar means" help="-merge" /> - <param name="tagFilter" type="integer" value="0" size="5" label="skip tags with expression smaller than this value" help="-tagFilter" /> - <param name="print" type="select" label="Type of output" help="-print" > - <option value="1" selected="True">blocks</option> - <option value="2">reads</option> + <param name="input" type="data" format="bed" label="BED file containing read expressions"/> + <param name="distance" type="integer" value="40" size="5" label="minimum distance between two clusters"/> + <param name="minClusterHeight" type="float" value="50" size="5" label="minimum height (readno) of a cluster"/> + <param name="minBlockHeight" type="float" value="1" size="5" label="minimum height (readno) of a block"/> + <param name="scale" type="float" value="0.5" size="5" label="scale stddev for a single read"/> + <param name="merge" type="integer" value="0" size="5" label="merge reads with almost similar means"/> + <param name="tagFilter" type="integer" value="0" size="5" label="skip tags with expression smaller than this value"/> + <param name="print" type="select" label="Type of output" > + <option value="1">blocks</option> + <option value="2" selected="True">reads</option> </param> </inputs> @@ -49,7 +49,6 @@ **References** -7. Reference If you use this program in your work you might want to cite: