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changeset 9:b994884d5541 draft

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Uploaded
author rnateam
date Tue, 10 Nov 2015 09:46:57 -0500
parents 17ef0e0dae68
children 17603d9eee69
files convert_bc_to_binary_RY.xml extract_bcs.xml merge_pcr_duplicates.xml
diffstat 3 files changed, 8 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/convert_bc_to_binary_RY.xml	Tue Nov 10 09:13:44 2015 -0500
+++ b/convert_bc_to_binary_RY.xml	Tue Nov 10 09:46:57 2015 -0500
@@ -13,15 +13,15 @@
 #end if
 > $default]]></command>
   <inputs>
-    <param label="Fasta file to convert." name="positional_1" type="data" format="fasta"/>
+    <param label="Fastq file to convert." name="positional_1" type="data" format="fastq"/>
   </inputs>
   <outputs>
-    <data hidden="false" name="default" format="fasta"/>
+    <data hidden="false" name="default" format="fastq"/>
   </outputs>
   <tests>
     <test>
-      <param name="positional_1" value="result.fa"/>
-      <output name="default" file="converted_bcs.fa"/>
+      <param name="positional_1" value="extracted_bcs.fastq"/>
+      <output name="default" file="converted_bcs.fastq"/>
     </test>
   </tests>
   <help><![CDATA[
--- a/extract_bcs.xml	Tue Nov 10 09:13:44 2015 -0500
+++ b/extract_bcs.xml	Tue Nov 10 09:46:57 2015 -0500
@@ -25,14 +25,14 @@
   </inputs>
   <outputs>
     <data hidden="false" name="default" format="fastq"/>
-    <data name="extractedbcs" format="fasta"/>
+    <data name="extractedbcs" format="fastq"/>
   </outputs>
   <tests>
     <test>
       <param name="positional_1" value="reads.fastq"/>
       <param name="positional_2" value="XXXNNXXX"/>
       <output name="default" file="result_original_head.fastq"/>
-      <output name="extractedbcs" file="result.fa"/>
+      <output name="extractedbcs" file="extracted_bcs.fastq"/>
     </test>
   </tests>
   <help><![CDATA[
--- a/merge_pcr_duplicates.xml	Tue Nov 10 09:13:44 2015 -0500
+++ b/merge_pcr_duplicates.xml	Tue Nov 10 09:46:57 2015 -0500
@@ -18,7 +18,7 @@
 > $default]]></command>
   <inputs>
     <param area="false" label="bed6 file containing alignments." name="positional_1" type="data" format="bed"/>
-    <param area="false" label="fasta barcode library." name="positional_2" type="data" format="fasta"/>
+    <param area="false" label="fasta barcode library." name="positional_2" type="data" format="fastq"/>
   </inputs>
   <outputs>
     <data format="bed" hidden="false" name="default"/>
@@ -26,7 +26,7 @@
   <tests>
     <test>
       <param name="positional_1" value="pcr_dupes_sorted_2.bed"/>
-      <param name="positional_2" value="pcr_dupes_randomdict.fa"/>
+      <param name="positional_2" value="pcr_dupes_randomdict.fastq"/>
       <output name="default" file="merged_pcr_dupes.bed"/>
     </test>
   </tests>