Mercurial > repos > rnateam > bctools
changeset 35:aff2c7260894 draft
integrate dsc and package updates
| author | rnateam |
|---|---|
| date | Fri, 18 Dec 2015 03:41:00 -0500 |
| parents | 5c46d375b837 |
| children | 6cee6ea7901e |
| files | flexbar_dsc.xml macros.xml tool_dependencies.xml |
| diffstat | 3 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/flexbar_dsc.xml Fri Dec 18 03:04:46 2015 -0500 +++ b/flexbar_dsc.xml Fri Dec 18 03:41:00 2015 -0500 @@ -421,14 +421,14 @@ </stdio> <outputs> - <data format="txt" name="output" metadata_source="reads"/> <collection name="list_output" type="list:paired" label="Duplicate List"> <!-- Use named regex group to grab pattern <identifier_0>_<identifier_1>.fq. Here identifier_0 is the list identifier in the nested collection and identifier_1 is either forward or reverse (for instance samp1_forward.fq). --> - <discover_datasets pattern="FlexbarOutput_barcode_(?P<identifier_0>[^_]+)_(?P<identifier_1>[^_]+)\.fastq" metadata_source="reads" visible="true" /> + <data format="txt" name="output" metadata_source="reads"/> + <discover_datasets pattern="FlexbarOutput_(?P<identifier_0>[^_]+)_(?P<identifier_1>[^_]+)\.fastq" metadata_source="reads" visible="true" /> </collection> </outputs>
--- a/macros.xml Fri Dec 18 03:04:46 2015 -0500 +++ b/macros.xml Fri Dec 18 03:41:00 2015 -0500 @@ -1,7 +1,7 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="1.65">biopython</requirement> + <requirement type="package" version="1.66">biopython</requirement> <requirement type="package" version="0.16">pandas</requirement> <requirement type="package" version="0.7.4">pybedtools</requirement> </requirements>
--- a/tool_dependencies.xml Fri Dec 18 03:04:46 2015 -0500 +++ b/tool_dependencies.xml Fri Dec 18 03:41:00 2015 -0500 @@ -1,7 +1,7 @@ <?xml version="1.0"?> <tool_dependency> <package name="biopython" version="1.65"> - <repository changeset_revision="b3a791f6e3ba" name="package_biopython_1_65" owner="biopython" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="907c57486667" name="package_python_2_7_biopython_1_66" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="pandas" version="0.16"> <repository changeset_revision="8766fb73e88f" name="package_python_2_7_pandas_0_16" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />