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comparison extract_bcs.xml @ 9:b994884d5541 draft

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author rnateam
date Tue, 10 Nov 2015 09:46:57 -0500
parents 1bfc5a5de843
children 0b9aab6aaebf
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8:17ef0e0dae68 9:b994884d5541
23 <param area="false" label="Barcoded sequences." name="positional_1" type="data" format="fastq"/> 23 <param area="false" label="Barcoded sequences." name="positional_1" type="data" format="fastq"/>
24 <param area="false" label="Pattern of barcode nucleotides starting at 5'-end. X positions will be moved to the header, N positions will be kept." name="positional_2" type="text"/> 24 <param area="false" label="Pattern of barcode nucleotides starting at 5'-end. X positions will be moved to the header, N positions will be kept." name="positional_2" type="text"/>
25 </inputs> 25 </inputs>
26 <outputs> 26 <outputs>
27 <data hidden="false" name="default" format="fastq"/> 27 <data hidden="false" name="default" format="fastq"/>
28 <data name="extractedbcs" format="fasta"/> 28 <data name="extractedbcs" format="fastq"/>
29 </outputs> 29 </outputs>
30 <tests> 30 <tests>
31 <test> 31 <test>
32 <param name="positional_1" value="reads.fastq"/> 32 <param name="positional_1" value="reads.fastq"/>
33 <param name="positional_2" value="XXXNNXXX"/> 33 <param name="positional_2" value="XXXNNXXX"/>
34 <output name="default" file="result_original_head.fastq"/> 34 <output name="default" file="result_original_head.fastq"/>
35 <output name="extractedbcs" file="result.fa"/> 35 <output name="extractedbcs" file="extracted_bcs.fastq"/>
36 </test> 36 </test>
37 </tests> 37 </tests>
38 <help><![CDATA[ 38 <help><![CDATA[
39 Exract barcodes from a FASTQ file according to a user-specified pattern. 39 Exract barcodes from a FASTQ file according to a user-specified pattern.
40 40