comparison convert_bc_to_binary_RY.py @ 50:0b9aab6aaebf draft

Uploaded 16cfcafe8b42055c5dd64e62c42b82b455027a40

49:303f6402a035

#!/usr/bin/env python

tool_description = """
Convert standard nucleotides to IUPAC nucleotide codes used for binary barcodes.

A and G are converted to nucleotide code R. T, U and C are converted to Y. By

Copyright: 2015
License: Apache
Email: [e-mail]
Status: Testing
"""

import argparse
import logging
from string import maketrans
from sys import stdout
from Bio import SeqIO
from Bio.Seq import Seq
from Bio.Alphabet import IUPAC

# # avoid ugly python IOError when stdout output is piped into another program
# # and then truncated (such as piping to head)
# from signal import signal, SIGPIPE, SIG_DFL
# signal(SIGPIPE, SIG_DFL)

# parse command line arguments
parser = argparse.ArgumentParser(description=tool_description,
                                 epilog=epilog,
                                 formatter_class=argparse.RawDescriptionHelpFormatter)

50:0b9aab6aaebf

#!/usr/bin/env python

import argparse
import logging
from string import maketrans
from sys import stdout
from Bio import SeqIO
from Bio.Seq import Seq
from Bio.Alphabet import IUPAC

tool_description = """
Convert standard nucleotides to IUPAC nucleotide codes used for binary barcodes.

A and G are converted to nucleotide code R. T, U and C are converted to Y. By

Copyright: 2015
License: Apache
Email: [e-mail]
Status: Testing
"""

# parse command line arguments
parser = argparse.ArgumentParser(description=tool_description,
                                 epilog=epilog,
                                 formatter_class=argparse.RawDescriptionHelpFormatter)