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1 <tool id="tablemerger" name="SNP table merger">
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2 <description>merges any number of SNP tables into one</description>
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3 <command interpreter="python">tablemerger.py $output
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4 #for $f in $inputs:
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5 $f.in
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6 #end for
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7 </command>
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8 <inputs>
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9 <repeat name="inputs" title="Input files">
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10 <param name="in" type="data" format="tabular" label="Input SNP table" />
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11 </repeat>
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12 </inputs>
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13 <outputs>
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14 <data name="output" format="tabular" label="${tool.name} on various SNP tables" />
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15 </outputs>
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16 <help>
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17 This tool takes any number of tab-delimited SNP tables and merges them together.It puts SNPs at the same position on the same line and ignores bases that are the same in two strains.
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18 Example input:
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19 Position Ref Strain1
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20 123 A G
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21 125 C T
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22
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23 Position Ref Strain2
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24 123 A T
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25 124 G C
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26 125 C T
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27
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28 Would give output:
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29 Position Ref Strain1 Strain2
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30 123 A G T
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31 124 G C
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32 125 C T T
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33 </help>
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34 </tool>
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