diff tablemerger.xml @ 0:cc961e057668 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tablemerger.xml	Wed Dec 12 06:26:26 2012 -0500
@@ -0,0 +1,34 @@
+<tool id="tablemerger" name="SNP table merger">
+  <description>merges any number of SNP tables into one</description>
+  <command interpreter="python">tablemerger.py $output 
+    #for $f in $inputs:
+    $f.in
+    #end for
+  </command>
+  <inputs>
+    <repeat name="inputs" title="Input files">
+      <param name="in" type="data" format="tabular" label="Input SNP table" />
+    </repeat>
+  </inputs>
+  <outputs>
+    <data name="output" format="tabular" label="${tool.name} on various SNP tables" />
+  </outputs>
+  <help>
+This tool takes any number of tab-delimited SNP tables and merges them together.It puts SNPs at the same position on the same line and ignores bases that are the same in two strains.
+Example input:
+Position Ref Strain1
+123 A G
+125 C T
+
+Position Ref Strain2
+123 A T
+124 G C
+125 C T
+
+Would give output:
+Position Ref Strain1 Strain2
+123 A G T
+124 G   C
+125 C T T
+  </help>
+</tool>