Mercurial > repos > rijst > snp_table_merger
changeset 1:f7c80c646b96 draft default tip
Uploaded
| author | rijst |
|---|---|
| date | Wed, 12 Dec 2012 06:32:37 -0500 |
| parents | 493433860c08 |
| children | |
| files | snpsplit.xml |
| diffstat | 1 files changed, 33 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/snpsplit.xml Wed Dec 12 06:32:37 2012 -0500 @@ -0,0 +1,33 @@ +<tool id="snpsplit" name="SNP splitter"> + <description>splits multicharacter entries into separate lines</description> + <command interpreter="python">snpsplit.py $input $output</command> + <inputs> + <param name="input" type="data" format="tabular" label="SNP table" /> + </inputs> + <outputs> + <data name="output" format="tabular" label="${tool.name} on ${on_string}" /> + </outputs> + <help> + +Input: tab delimited, format Position Ref Mut +Position is 1-based genomic coordinate +Ref is the reference sequence +Mut is the mutant sequence + +Ref en Mut sequences consisting of more than one character will be split up into separate lines. Example: +Input: +123 CGT ATG +Output: +123 C A +124 G T +125 T G + +Bases that are the same in both columns, will be skipped. Example: +Input: +123 CGT AGG +Output: +123 C A +125 T G + + </help> +</tool>