# HG changeset patch
# User rijst
# Date 1355311957 18000
# Node ID f7c80c646b96c7f319e582a9e35fc4db0d216f25
# Parent  493433860c0840a9434cd27a6d4cabcd3e5674b8
Uploaded

diff -r 493433860c08 -r f7c80c646b96 snpsplit.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/snpsplit.xml	Wed Dec 12 06:32:37 2012 -0500
@@ -0,0 +1,33 @@
+<tool id="snpsplit" name="SNP splitter">
+  <description>splits multicharacter entries into separate lines</description>
+  <command interpreter="python">snpsplit.py $input $output</command>
+  <inputs>
+    <param name="input" type="data" format="tabular" label="SNP table" />
+  </inputs>
+  <outputs>
+    <data name="output" format="tabular" label="${tool.name} on ${on_string}" />
+  </outputs>
+  <help>
+
+Input: tab delimited, format Position Ref Mut
+Position is 1-based genomic coordinate
+Ref is the reference sequence
+Mut is the mutant sequence
+
+Ref en Mut sequences consisting of more than one character will be split up into separate lines. Example:
+Input:  
+123 CGT ATG
+Output: 
+123 C A
+124 G T
+125 T G
+
+Bases that are the same in both columns, will be skipped. Example:
+Input:  
+123 CGT AGG
+Output: 
+123 C A
+125 T G
+
+  </help>
+</tool>