Mercurial > repos > rico > test_single_file
changeset 10:ea6353a54fda
Deleted selected files
| author | rico |
|---|---|
| date | Thu, 05 Apr 2012 15:15:43 -0400 |
| parents | 2ca8873daedd |
| children | d82a83653e14 |
| files | map_ensembl_transcripts.xml |
| diffstat | 1 files changed, 0 insertions(+), 38 deletions(-) [+] |
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--- a/map_ensembl_transcripts.xml Thu Apr 05 15:15:09 2012 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,38 +0,0 @@ -<tool id="gd_new_oscar" name="Map" version="1.0.0"> - <description>Ensembl transcripts to KEGG pathways</description> - - <command interpreter="python"> - rtrnKEGGpthwfENSEMBLTc.py - "--loc_file=${GALAXY_DATA_INDEX_DIR}/gd.oscar.loc" - "--species=${input.metadata.dbkey}" - "--input=${input}" - "--posENSEMBLclmn=${ensembl_col}" - "--output=${output}" - </command> - - <inputs> - <param name="input" type="data" format="tabular" label="Table" /> - <param name="ensembl_col" type="data_column" data_ref="input" label="Column with ENSEMBL transcript code" /> - </inputs> - - <outputs> - <data name="output" format="tabular" /> - </outputs> - - <tests> - <test> - <param name="input" value="genome_diversity/test_in/ensembl.tabular" ftype="tabular"> - <metadata name='dbkey' value='canFam2' /> - </param> - <param name="ensembl_col" value="1" /> - - <output name="output" file="genome_diversity/test_out/map_ensembl_transcripts/map_ensembl_transcripts.tabular" /> - </test> - </tests> - - <help> -**What it does** - -Adds the fields KEGG gene codes and KEGG pathways to an input table of ENSEMBL transcript codes. - </help> -</tool>