changeset 20:92711282d4c7

Deleted selected files

--- a/population_structure.xml	Thu Apr 05 15:20:14 2012 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,55 +0,0 @@
-<tool id="gd_population_structure" name="Population" version="1.0.0">
-  <description>structure</description>
-
-  <command interpreter="python">
-    population_structure.py "$input" "${input.extra_files_path}/admix.ped" "$output" "$output.extra_files_path" "$populations"
-  </command>
-
-  <inputs>
-    <param name="input" type="data" format="wped" label="Dataset" />
-    <param name="populations" type="integer" min="1" value="2" label="Number of populations" />
-  </inputs>
-
-  <outputs>
-    <data name="output" format="html" />
-  </outputs>
-
-  <tests>
-    <test>
-      <param name='input' value='fake' ftype='wped' >
-        <metadata name='base_name' value='admix' />
-        <composite_data value='genome_diversity/test_out/prepare_population_structure/prepare_population_structure.html' />
-        <composite_data value='genome_diversity/test_out/prepare_population_structure/admix.ped' />
-        <composite_data value='genome_diversity/test_out/prepare_population_structure/admix.map' />
-        <edit_attributes type='name' value='fake' />
-      </param>
-      <param name='populations' value='2' />
-
-      <output name="output" file="genome_diversity/test_out/population_structure/population_structure.html" ftype="html" compare="diff" lines_diff="2">
-        <extra_files type="file" name='numeric.txt' value="genome_diversity/test_out/population_structure/numeric.txt" />
-        <extra_files type="file" name='graphical.pdf' value="genome_diversity/test_out/population_structure/graphical.pdf" compare="sim_size" delta="1000" />
-      </output>
-    </test>
-  </tests>
-
-
-  <help>
-**What it does**
-
-The users selects a set of data generated by the Galaxy tool to "prepare
-to look for population structure", and specifies a number, K, of ancestral
-populations.  The tool estimates the proportion of each individual's ancestry
-coming from each ancestral population.  The proportions are shown both as
-numbers and graphically.
-
-**Acknowledgments**
-
-We use the program "Admixture", downloaded from
-
-http://www.genetics.ucla.edu/software/admixture/
-
-and described in the paper "Fast model-based estimation of ancestry in
-unrelated individuals" by David H. Alexander, John Novembre and Kenneth Lange,
-Genome Research 19 (2009), pp. 1655-1664.
-  </help>
-</tool>