view map_ensembl_transcripts.xml @ 0:580da578c5e6 default tip

Uploaded

<tool id="gd_new_oscar" name="Map" version="1.0.0">
  <description>Ensembl transcripts to KEGG pathways</description>

  <command interpreter="python">
    rtrnKEGGpthwfENSEMBLTc.py
      "--loc_file=${GALAXY_DATA_INDEX_DIR}/gd.oscar.loc"
      "--species=${input.metadata.dbkey}"
      "--input=${input}"
      "--posENSEMBLclmn=${ensembl_col}"
      "--output=${output}"
  </command>

  <inputs>
    <param name="input" type="data" format="tabular" label="Table" />
    <param name="ensembl_col" type="data_column" data_ref="input" label="Column with ENSEMBL transcript code" />
  </inputs>

  <outputs>
    <data name="output" format="tabular" />
  </outputs>

  <help>
**What it does**

Adds the fields KEGG gene codes and KEGG pathways to an input table of ENSEMBL transcript codes.
  </help>
</tool>