Mercurial > repos > richjp > cloudmap_zebrafish_hom_mapping

changeset 10:9b60d5a2c313 draft

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Uploaded
author richjp
date Mon, 13 Oct 2014 08:50:11 -0400
parents 0fee75e8a18e
children 2136299a2f82
files cloudmap_zf_hom_mapping/cloudmap_zf_hom_mapping.xml
diffstat 1 files changed, 5 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/cloudmap_zf_hom_mapping/cloudmap_zf_hom_mapping.xml	Mon Oct 13 08:49:26 2014 -0400
+++ b/cloudmap_zf_hom_mapping/cloudmap_zf_hom_mapping.xml	Mon Oct 13 08:50:11 2014 -0400
@@ -1,4 +1,4 @@
-<tool id="cloudmap_zf_hom_mapping" name="cloudmap_zf_hom_mapping" version="0.01">
+<tool id="CloudMap: zebrafish homozygosity mapping" name="CloudMap: zebrafish homozygosity mapping" version="0.01">
 <description>Map a zebrafish mutant using bulk sergeant homozygosity mapping</description>
 <requirements>
       <requirement type="package" version="9.10">ghostscript</requirement>
@@ -655,10 +655,10 @@
 <help>
 
 
-**What it Does**
-
-This tool is part of an update to the CloudMap pipeline (Minevich et al. 2012) to incorporate homozygosity mapping in zebrafish. This tool facilitates the mapping of zebrafish mutants from WGS or RNA-Seq data using bulk segregant homozygosity mapping. As input it takes a VCF list of variants (usually quality filtered for Q200 with WT SNPs/indels removed). This file is produced when running the CloudMap zebrafish pipeline. It plots an adjusted homozygosity ratio such that a high ratio indicates mapping region. It outputs an HTML file with combined and individual chromosome plots as PDFs. The adjusted homozygosity ratio is calculated as described in:
-
+**What it Does**
+
+This tool is part of an update to the CloudMap pipeline (Minevich et al. 2012) to incorporate homozygosity mapping in zebrafish. This tool facilitates the mapping of zebrafish mutants from WGS or RNA-Seq data using bulk segregant homozygosity mapping. As input it takes a VCF list of variants (usually quality filtered for Q200 with WT SNPs/indels removed). This file is produced when running the CloudMap zebrafish pipeline. It plots an adjusted homozygosity ratio such that a high ratio indicates mapping region. It outputs an HTML file with combined and individual chromosome plots as PDFs. The adjusted homozygosity ratio is calculated as described in:
+
 IN SUBMISSION
 
 **Script**