Mercurial > repos > richjp > cloudmap_zebrafish_hom_mapping
annotate cloudmap_zf_hom_mapping/tool_dependencies.xml @ 0:b4ac1dd0f802 draft
Uploaded
| author | richjp |
|---|---|
| date | Fri, 10 Oct 2014 12:31:23 -0400 |
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| children |
| rev | line source |
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| 0 | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | |
| 3 <package name="ghostscript" version="9.10"> | |
| 4 <repository changeset_revision="9345d2740f0c" name="package_ghostscript_9_10" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> | |
| 5 </package> | |
| 6 <package name="graphicsmagick" version="1.3.18"> | |
| 7 <repository changeset_revision="2fd4eb971ba5" name="package_graphicsmagick_1_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> | |
| 8 </package> | |
| 9 <readme> | |
| 10 | |
| 11 **What it Does** | |
| 12 | |
| 13 This tool takes as input a VCF list of SNPs from pooled bulk-segregant zebrafish WGS or RNASeq data. This VCF should be quality filtered (usually Q200) and have had wild type SNPs/indels subtracted. This file is generated when running the zebrafish WGS or RNA-seq CloudMap workflows. It plots adjusted homozygosity ratios as in ores to determine the likely position of a causative mutation. This tool was created by Richard J. Poole (UCL) using TooolFactory and is described in: | |
| 14 | |
| 15 IN PRESS | |
| 16 | |
| 17 </readme> | |
| 18 </tool_dependency> |