Mercurial > repos > rhpvorderman > shm_csr

annotate tests/test_shm_csr.py @ 5:495a521cf9f2 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload commit 40d62ec3d2fea3c3bac605c976941e1f3b7e2cd4"
author rhpvorderman
date Tue, 16 Nov 2021 11:16:06 +0000
parents dced6d52d218
children ea9d5fc4c001
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
1 # Copyright (c) 2021 Leiden University Medical Center
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
2 #
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
3 # Permission is hereby granted, free of charge, to any person obtaining a copy
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
4 # of this software and associated documentation files (the "Software"), to deal
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
5 # in the Software without restriction, including without limitation the rights
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
6 # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
7 # copies of the Software, and to permit persons to whom the Software is
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
8 # furnished to do so, subject to the following conditions:
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
9 #
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
10 # The above copyright notice and this permission notice shall be included in
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
11 # all copies or substantial portions of the Software.
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
12 #
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
13 # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
14 # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
15 # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
16 # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
17 # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
18 # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
19 # SOFTWARE.
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
20
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
21 import os
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
22 import shutil
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
23 import subprocess
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
24 import sys
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
25 import tempfile
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
26 from pathlib import Path
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
27
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
28 import pytest
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
29
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
30 GIT_ROOT = str(Path(__file__).parent.parent.absolute())
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
31 TEST_DIR = Path(__file__).parent
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
32 TEST_DATA_DIR = TEST_DIR / "data"
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
33 VALIDATION_DATA_DIR = TEST_DIR / "validation_data"
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
34 CONTROL_NWK377_PB_IGHC_MID1_40nt_2 = TEST_DATA_DIR / "CONTROL_NWK377_PB_IGHC_MID1_40nt_2.txz"
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
35
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
36
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
37 @pytest.fixture(scope="module")
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
38 def shm_csr_result():
5
495a521cf9f2 "planemo upload commit 40d62ec3d2fea3c3bac605c976941e1f3b7e2cd4"
rhpvorderman
parents: 3
diff changeset
39 docker_container = "quay.io/rhpvorderman/mulled-v2-f7d31c9d7424063a492fc0e5ecbf89bc757c0107:2b50bdd4d8c1fefc6ec24b0753fad0dcecec843b-0"
3
dced6d52d218 "planemo upload commit bdfa4424496371fbea3edd3de07d8be9d0bad432"
rhpvorderman
parents: 0
diff changeset
40 temp_dir = Path(tempfile.mkdtemp())
dced6d52d218 "planemo upload commit bdfa4424496371fbea3edd3de07d8be9d0bad432"
rhpvorderman
parents: 0
diff changeset
41 tool_dir = temp_dir / "shm_csr"
dced6d52d218 "planemo upload commit bdfa4424496371fbea3edd3de07d8be9d0bad432"
rhpvorderman
parents: 0
diff changeset
42 shutil.copytree(GIT_ROOT, tool_dir)
dced6d52d218 "planemo upload commit bdfa4424496371fbea3edd3de07d8be9d0bad432"
rhpvorderman
parents: 0
diff changeset
43 working_dir = temp_dir / "working"
dced6d52d218 "planemo upload commit bdfa4424496371fbea3edd3de07d8be9d0bad432"
rhpvorderman
parents: 0
diff changeset
44 working_dir.mkdir(parents=True)
dced6d52d218 "planemo upload commit bdfa4424496371fbea3edd3de07d8be9d0bad432"
rhpvorderman
parents: 0
diff changeset
45 output_dir = temp_dir / "outputs"
dced6d52d218 "planemo upload commit bdfa4424496371fbea3edd3de07d8be9d0bad432"
rhpvorderman
parents: 0
diff changeset
46 output_dir.mkdir(parents=True)
dced6d52d218 "planemo upload commit bdfa4424496371fbea3edd3de07d8be9d0bad432"
rhpvorderman
parents: 0
diff changeset
47 wrapper = str(tool_dir / "wrapper.sh")
0
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
48 input = str(CONTROL_NWK377_PB_IGHC_MID1_40nt_2)
3
dced6d52d218 "planemo upload commit bdfa4424496371fbea3edd3de07d8be9d0bad432"
rhpvorderman
parents: 0
diff changeset
49 out_files_path = output_dir / "results"
dced6d52d218 "planemo upload commit bdfa4424496371fbea3edd3de07d8be9d0bad432"
rhpvorderman
parents: 0
diff changeset
50 out_file = out_files_path / "result.html"
0
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
51 infile_name = "input_data"
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
52 functionality = "productive"
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
53 unique = "Sequence.ID"
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
54 naive_output = "no"
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
55 naive_output_ca = "None"
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
56 naive_output_cg = "None"
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
57 naive_output_cm = "None"
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
58 naive_output_ce = "None"
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
59 naive_output_all = "None"
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
60 filter_unique = "remove"
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
61 filter_unique_count = '2'
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
62 class_filter = '70_70'
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
63 empty_region_filter = 'FR1'
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
64 fast = 'no'
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
65 cmd = [
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
66 "bash",
3
dced6d52d218 "planemo upload commit bdfa4424496371fbea3edd3de07d8be9d0bad432"
rhpvorderman
parents: 0
diff changeset
67 wrapper,
0
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
68 input,
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
69 "custom",
3
dced6d52d218 "planemo upload commit bdfa4424496371fbea3edd3de07d8be9d0bad432"
rhpvorderman
parents: 0
diff changeset
70 str(out_file),
dced6d52d218 "planemo upload commit bdfa4424496371fbea3edd3de07d8be9d0bad432"
rhpvorderman
parents: 0
diff changeset
71 str(out_files_path),
0
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
72 infile_name,
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
73 "-",
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
74 functionality,
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
75 unique,
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
76 naive_output,
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
77 naive_output_ca,
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
78 naive_output_cg,
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
79 naive_output_cm,
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
80 naive_output_ce,
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
81 naive_output_all,
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
82 filter_unique,
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
83 filter_unique_count,
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
84 class_filter,
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
85 empty_region_filter,
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
86 fast
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
87 ]
5
495a521cf9f2 "planemo upload commit 40d62ec3d2fea3c3bac605c976941e1f3b7e2cd4"
rhpvorderman
parents: 3
diff changeset
88 docker_cmd = ["docker", "run", "-v", f"{temp_dir}:{temp_dir}",
495a521cf9f2 "planemo upload commit 40d62ec3d2fea3c3bac605c976941e1f3b7e2cd4"
rhpvorderman
parents: 3
diff changeset
89 "-v", f"{input}:{input}",
495a521cf9f2 "planemo upload commit 40d62ec3d2fea3c3bac605c976941e1f3b7e2cd4"
rhpvorderman
parents: 3
diff changeset
90 "-w", str(working_dir),
495a521cf9f2 "planemo upload commit 40d62ec3d2fea3c3bac605c976941e1f3b7e2cd4"
rhpvorderman
parents: 3
diff changeset
91 docker_container] + cmd
3
dced6d52d218 "planemo upload commit bdfa4424496371fbea3edd3de07d8be9d0bad432"
rhpvorderman
parents: 0
diff changeset
92 with open(temp_dir / "stderr", "wt") as stderr_file:
dced6d52d218 "planemo upload commit bdfa4424496371fbea3edd3de07d8be9d0bad432"
rhpvorderman
parents: 0
diff changeset
93 with open(temp_dir / "stdout", "wt") as stdout_file:
5
495a521cf9f2 "planemo upload commit 40d62ec3d2fea3c3bac605c976941e1f3b7e2cd4"
rhpvorderman
parents: 3
diff changeset
94 subprocess.run(docker_cmd, cwd=working_dir, stdout=stdout_file,
3
dced6d52d218 "planemo upload commit bdfa4424496371fbea3edd3de07d8be9d0bad432"
rhpvorderman
parents: 0
diff changeset
95 stderr=stderr_file, check=True)
0
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
96 yield Path(out_files_path)
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
97 #shutil.rmtree(temp_dir)
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
98
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
99
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
100 def test_check_output(shm_csr_result):
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
101 assert shm_csr_result.exists()
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
102
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
103
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
104 @pytest.mark.parametrize("filename", os.listdir(VALIDATION_DATA_DIR))
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
105 def test_results_match_validation(shm_csr_result, filename):
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
106 if filename == "shm_overview.txt":
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
107 # TODO: Fix errors in shm_overview.
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
108 return
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
109 with open(Path(shm_csr_result, filename)) as result_h:
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
110 with open(Path(VALIDATION_DATA_DIR, filename)) as validate_h:
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
111 for line in result_h:
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
112 assert line == validate_h.readline()
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
113
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
114
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
115 def test_nt_overview(shm_csr_result):
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
116 with open(Path(shm_csr_result, "sequence_overview", "ntoverview.txt")
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
117 ) as result_h:
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
118 with open(Path(TEST_DIR, "sequence_overview", "ntoverview.txt")
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
119 ) as validate_h:
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
120 for line in result_h:
64d74ba01a7c "planemo upload commit 78d1fae87dbcf490e49a9f99e7a06de7328e16d4"
rhpvorderman
parents:
diff changeset
121 assert line == validate_h.readline()