Mercurial > repos > rhpvorderman > data_manager_select_index_by_path

changeset 18:cffe5c3a3a18 draft

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planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 615ad2fb1b9bea56bb92aece10c4efaf1060c553-dirty
author rhpvorderman
date Wed, 04 Jul 2018 03:50:27 -0400
parents a52829da3f0b
children 186a86d97979
files data_manager/data_manager_select_index_by_path.xml
diffstat 1 files changed, 8 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/data_manager_select_index_by_path.xml	Wed Jul 04 03:43:34 2018 -0400
+++ b/data_manager/data_manager_select_index_by_path.xml	Wed Jul 04 03:50:27 2018 -0400
@@ -6,12 +6,18 @@
     <description>path inputer</description>
     <command detect_errors="exit_code" interpreter="python">
         path_name_value_key_manager.py
-        --value "${value}"
+        #if $value
+            --value "${value}"
+        #end if
+        #if $dbkey
         --dbkey "${dbkey}"
+        #end if
+        #if $name
         --name "${name}"
+        # end if
         --path "${path}"
         --data_table_name "${data_table_set.data_table}"
-        --json_output_file "${json_output_file}
+        --json_output_file "${json_output_file}"
         #if $data_table_set.data_table == "rnastar_index2"
         --extra-columns {'with-gtf': '$data_table_set.with_gtf'}
         #end if