diff data_manager/indexes.yml @ 11:8ccfeedd1f03 draft

planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager/indexes.yml	Mon Sep 11 07:23:55 2017 -0400
@@ -0,0 +1,48 @@
+all_fasta:
+  name: fasta file
+  extensions:
+    - .fa
+bowtie2_indexes:
+  name: bowtie2 index
+  extensions:
+    - .bt2
+bowtie_indexes:
+  name: bowtie index
+  extensions:
+    - .ebwt
+bowtie_indexes_color:
+  name: bowtie color index
+  extensions:
+    - .ebwt
+bwa_mem_indexes:
+  name: bwa mem index
+  extensions:
+    - .amb
+    - .ann
+    - .bwt
+    - .pac
+    - .sa
+bwameth_indexes:
+  name: bwa_meth_index
+fasta_indexes:
+  name: fasta index
+  extensions:
+    - .fai
+gatk_picard_index:
+  name: picard index for GATK
+gene_transfer:
+  name: Gene Transfer File
+  extensions:
+    - .gtf
+hisat2_indexes:
+  name: hisat2 index
+  extensions:
+    - .ht2
+kallisto_indexes:
+  name: kallisto index
+picard_indexes:
+  name: picard index
+tophat2_indexes:
+  name: tophat2 index
+  extensions:
+    - .bt2