Mercurial > repos > rhpvorderman > data_manager_select_index_by_path

annotate data_manager/indexes.yml @ 11:8ccfeedd1f03 draft

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planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
author rhpvorderman
date Mon, 11 Sep 2017 07:23:55 -0400
parents
children 680110ffdcfe
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11
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
parents:
diff changeset
1 all_fasta:
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
parents:
diff changeset
2 name: fasta file
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
parents:
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3 extensions:
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
parents:
diff changeset
4 - .fa
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
parents:
diff changeset
5 bowtie2_indexes:
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
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6 name: bowtie2 index
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
parents:
diff changeset
7 extensions:
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
parents:
diff changeset
8 - .bt2
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
parents:
diff changeset
9 bowtie_indexes:
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
parents:
diff changeset
10 name: bowtie index
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
parents:
diff changeset
11 extensions:
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
parents:
diff changeset
12 - .ebwt
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
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13 bowtie_indexes_color:
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
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14 name: bowtie color index
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
parents:
diff changeset
15 extensions:
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
parents:
diff changeset
16 - .ebwt
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
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17 bwa_mem_indexes:
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
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18 name: bwa mem index
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
parents:
diff changeset
19 extensions:
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
parents:
diff changeset
20 - .amb
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
parents:
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21 - .ann
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
parents:
diff changeset
22 - .bwt
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
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23 - .pac
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
parents:
diff changeset
24 - .sa
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
parents:
diff changeset
25 bwameth_indexes:
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
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26 name: bwa_meth_index
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
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27 fasta_indexes:
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
parents:
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28 name: fasta index
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
parents:
diff changeset
29 extensions:
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
parents:
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30 - .fai
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
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31 gatk_picard_index:
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
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32 name: picard index for GATK
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
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33 gene_transfer:
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
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34 name: Gene Transfer File
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
parents:
diff changeset
35 extensions:
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
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36 - .gtf
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
parents:
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37 hisat2_indexes:
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
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38 name: hisat2 index
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
parents:
diff changeset
39 extensions:
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
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40 - .ht2
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
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41 kallisto_indexes:
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
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42 name: kallisto index
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
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43 picard_indexes:
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
parents:
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44 name: picard index
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
parents:
diff changeset
45 tophat2_indexes:
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
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46 name: tophat2 index
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
parents:
diff changeset
47 extensions:
8ccfeedd1f03 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 6fd3421f2405e0e56147f1ee807c297dad8e547d
rhpvorderman
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48 - .bt2