Mercurial > repos > refinery-platform > refinery_test_workflows

annotate Test_workflow__SPP_analog.ga @ 2:de913d82bdcb draft

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planemo upload commit 5cd1dc74be32db93cccb661358872464485a1824
author refinery-platform
date Tue, 10 Apr 2018 10:32:06 -0400
parents e75c9c9f72fc
children
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1 {
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2 "a_galaxy_workflow": "true",
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3 "annotation": "{\n\t\"description\": \"Test workflow SPP analog\",\n\t\t\"file_relationship\": {\n\t\t \"value_type\": \"LIST\",\n\t\t \"name\": \"List of Paired Input files\",\n \"file_relationship\": {\n\t\t\t\"file_relationship\": {},\n\t\t\t\"value_type\": \"PAIR\",\n\t\t\t\"name\": \"Paired Input files\",\n\t\t\t\"input_files\": [{\n\t\t\t\t\t\"allowed_filetypes\": [{\"name\": \"TXT\"}],\n\t\t\t\t\t\"name\": \"Tag File\",\n\t\t\t\t\t\"description\": \"Input Tag File\"\n\t\t\t\t},\n\t\t\t\t{\n\t\t\t\t\t\"allowed_filetypes\": [{\"name\": \"TXT\"}],\n\t\t\t\t\t\"name\": \"Control File\",\n\t\t\t\t\t\"description\": \"Input Control File\"\n\t\t\t\t}\n\t\t\t]\n\t\t}\n }\n}",
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4 "format-version": "0.1",
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5 "name": "Test workflow: SPP analog",
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6 "steps": {
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12 "input_connections": {},
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13 "inputs": [],
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15 "name": "Input dataset collection",
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16 "outputs": [],
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24 "type": "data_collection_input",
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26 "workflow_outputs": [
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29 "output_name": "output",
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30 "uuid": "fb1d7e2e-169b-4992-9e0f-ef50bcdfb4df"
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31 }
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45 "inputs": [
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46 {
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47 "description": "runtime parameter for tool Split Paired Collection",
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48 "name": "input_collection"
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51 "label": null,
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52 "name": "Split Paired Collection",
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53 "outputs": [
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72 "action_type": "ChangeDatatypeAction",
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87 "HideDatasetActionreverse_element": {
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88 "action_arguments": {},
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89 "action_type": "HideDatasetAction",
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90 "output_name": "reverse_element"
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91 }
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92 },
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93 "tool_id": "toolshed.g2.bx.psu.edu/repos/refinery-platform/split_paired_collection/split_paired_collection/0.2",
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94 "tool_shed_repository": {
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95 "changeset_revision": "3a60513b51a2",
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96 "name": "split_paired_collection",
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97 "owner": "refinery-platform",
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98 "tool_shed": "toolshed.g2.bx.psu.edu"
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99 },
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100 "tool_state": "{\"__page__\": null, \"__rerun_remap_job_id__\": null, \"input_collection\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\"}",
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101 "tool_version": "0.2",
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102 "type": "tool",
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103 "uuid": "65d6b62c-9fcb-4779-a4a7-f0cfd2ece6a3",
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104 "workflow_outputs": []
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105 },
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106 "2": {
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107 "annotation": "",
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108 "content_id": "testtoolshed.g2.bx.psu.edu/repos/refinery-platform/refinery_test/refinery_test_1-1/0.1",
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111 "input_connections": {
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114 "output_name": "forward_element"
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115 }
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116 },
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117 "inputs": [
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118 {
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119 "description": "runtime parameter for tool Refinery test tool 1-1",
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120 "name": "input_file"
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121 }
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122 ],
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124 "name": "Refinery test tool 1-1",
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125 "outputs": [
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138 "action_type": "HideDatasetAction",
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139 "output_name": "output_file"
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894 "position": {
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895 "left": 2096.5,
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896 "top": 574
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897 },
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898 "post_job_actions": {
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899 "RenameDatasetActionoutput_file": {
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900 "action_arguments": {
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901 "newname": "test_04"
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902 },
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903 "action_type": "RenameDatasetAction",
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904 "output_name": "output_file"
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905 }
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906 },
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907 "tool_id": "testtoolshed.g2.bx.psu.edu/repos/refinery-platform/refinery_test/refinery_test_1-1/0.1",
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908 "tool_shed_repository": {
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909 "changeset_revision": "b87749d7a24c",
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910 "name": "refinery_test",
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911 "owner": "refinery-platform",
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912 "tool_shed": "testtoolshed.g2.bx.psu.edu"
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913 },
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914 "tool_state": "{\"__page__\": null, \"input_file\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"stdout\": \"\\\"false\\\"\", \"exit_code\": \"\\\"0\\\"\", \"p_fail\": \"\\\"0.0\\\"\", \"empty_outfile\": \"\\\"false\\\"\", \"stderr\": \"\\\"false\\\"\", \"sleep_time\": \"\\\"0\\\"\"}",
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915 "tool_version": "0.1",
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916 "type": "tool",
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917 "uuid": "cf9af5ab-4aab-4db2-953c-e507c9c3b04a",
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918 "workflow_outputs": [
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919 {
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920 "label": null,
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921 "output_name": "output_file",
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922 "uuid": "a36ae36f-67bb-41da-b288-574ab16acc58"
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923 }
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924 ]
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925 }
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926 },
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927 "uuid": "098ea63d-c314-4e77-b154-7711077f3d5d"
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928 }