Mercurial > repos > recetox > waveica

annotate waveica_macros.xml @ 4:8b55efc7d117 draft

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"planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit aa8206a01efc1813f2586584782f28a73a17fe86"
author recetox
date Mon, 10 Jan 2022 16:01:35 +0000
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8b55efc7d117 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit aa8206a01efc1813f2586584782f28a73a17fe86"
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1 <macros>
8b55efc7d117 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit aa8206a01efc1813f2586584782f28a73a17fe86"
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2 <token name="@TOOL_VERSION@">0.2.0</token>
8b55efc7d117 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit aa8206a01efc1813f2586584782f28a73a17fe86"
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3
8b55efc7d117 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit aa8206a01efc1813f2586584782f28a73a17fe86"
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4 <xml name="creator">
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5 <creator>
8b55efc7d117 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit aa8206a01efc1813f2586584782f28a73a17fe86"
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6 <organization
8b55efc7d117 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit aa8206a01efc1813f2586584782f28a73a17fe86"
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7 url="https://www.recetox.muni.cz"
8b55efc7d117 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit aa8206a01efc1813f2586584782f28a73a17fe86"
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8 name="RECETOX MUNI" />
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9 </creator>
8b55efc7d117 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit aa8206a01efc1813f2586584782f28a73a17fe86"
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10 </xml>
8b55efc7d117 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit aa8206a01efc1813f2586584782f28a73a17fe86"
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11 <xml name="general_parameters">
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12 <param type="data" name="data" label="Feature table" format="csv" help=""/>
8b55efc7d117 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit aa8206a01efc1813f2586584782f28a73a17fe86"
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13 <param type="integer" value="20" name="k" label="Number of components to decompose" help="maximal component that ICA decomposes"/>
8b55efc7d117 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit aa8206a01efc1813f2586584782f28a73a17fe86"
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14 <param type="float" value="0" name="alpha" label="Alpha" help="trade-off value between the independence of samples (temporal ICA) and variables (spatial ICA), should be between 0 and 1"/>
8b55efc7d117 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit aa8206a01efc1813f2586584782f28a73a17fe86"
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15 </xml>
8b55efc7d117 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit aa8206a01efc1813f2586584782f28a73a17fe86"
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16 <xml name="batchwise_parameters">
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17 <param type="float" value="0.05" name="t" label="Batch-association threshold" help="threshold to consider a component associate with the batch,
8b55efc7d117 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit aa8206a01efc1813f2586584782f28a73a17fe86"
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18 should be between 0 and 1"/>
8b55efc7d117 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit aa8206a01efc1813f2586584782f28a73a17fe86"
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19 <param type="float" value="0.05" name="t2" label="Group-association threshold" help="threshold to consider a component associate with the group,
8b55efc7d117 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit aa8206a01efc1813f2586584782f28a73a17fe86"
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20 should be between 0 and 1"/>
8b55efc7d117 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit aa8206a01efc1813f2586584782f28a73a17fe86"
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21 </xml>
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22 <xml name="singlebatch_parameters">
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23 <param type="float" value="0" name="cutoff" label="Cutoff" help="threshold of the variation explained by the injection order for independent components, should be between 0 and 1"/>
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24 </xml>
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25 <xml name="exclude_blanks">
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26 <param name="exclude_blanks" type="boolean" checked="false" truevalue="TRUE" falsevalue="FALSE" label="Remove blanks" help="Excludes blank samples from the output" />
8b55efc7d117 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit aa8206a01efc1813f2586584782f28a73a17fe86"
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27 </xml>
8b55efc7d117 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit aa8206a01efc1813f2586584782f28a73a17fe86"
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28 <xml name="wf">
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29 <conditional name="wf">
8b55efc7d117 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit aa8206a01efc1813f2586584782f28a73a17fe86"
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30 <param type="select" name="wavelet_filter" label="Wavelet transform filter" help="wavelet function and filter length [1] (see footnotes for more details)">
8b55efc7d117 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit aa8206a01efc1813f2586584782f28a73a17fe86"
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31 <option value="d" selected="True">Daubechies</option>
8b55efc7d117 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit aa8206a01efc1813f2586584782f28a73a17fe86"
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32 <option value="la" >Least Asymetric</option>
8b55efc7d117 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit aa8206a01efc1813f2586584782f28a73a17fe86"
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33 <option value="bl" >Best Localized</option>
8b55efc7d117 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit aa8206a01efc1813f2586584782f28a73a17fe86"
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34 <option value="c" >Coiflet</option>
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35 </param>
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36 <when value="d">
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37 <param name="wavelet_length" type="select" label="filter length">
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38 <option value="2" selected="True">2</option>
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39 <option value="4">4</option>
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40 <option value="6">6</option>
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41 <option value="8">8</option>
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42 <option value="10">10</option>
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43 <option value="12">12</option>
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44 <option value="14">14</option>
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45 <option value="16">16</option>
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46 <option value="18">18</option>
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47 <option value="20">20</option>
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48 </param>
8b55efc7d117 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit aa8206a01efc1813f2586584782f28a73a17fe86"
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49 </when>
8b55efc7d117 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit aa8206a01efc1813f2586584782f28a73a17fe86"
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50 <when value="la">
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51 <param name="wavelet_length" type="select" label="filter length">
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52 <option value="8">8</option>
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53 <option value="10">10</option>
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54 <option value="12">12</option>
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55 <option value="14">14</option>
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56 <option value="16">16</option>
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57 <option value="18">18</option>
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58 <option value="20">20</option>
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59 </param>
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60 </when>
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61 <when value="bl">
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62 <param name="wavelet_length" type="select" label="filter length">
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63 <option value="14">14</option>
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64 <option value="18">18</option>
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65 <option value="20">20</option>
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66 </param>
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67 </when>
8b55efc7d117 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit aa8206a01efc1813f2586584782f28a73a17fe86"
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68 <when value="c">
8b55efc7d117 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit aa8206a01efc1813f2586584782f28a73a17fe86"
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69 <param name="wavelet_length" type="select" label="filter length">
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70 <option value="6">6</option>
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71 <option value="12">12</option>
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72 <option value="18">18</option>
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73 <option value="24">24</option>
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74 <option value="30">30</option>
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75 </param>
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76 </when>
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77 </conditional>
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78 </xml>
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79
8b55efc7d117 "planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit aa8206a01efc1813f2586584782f28a73a17fe86"
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80 <xml name="outputs">
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81 <outputs>
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82 <data name="normalized_data" format="tsv" />
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83 </outputs>
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84 </xml>
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85 </macros>