Mercurial > repos > recetox > data_manager_recetox_metabolite_fetcher

diff data_manager_conf.xml @ 0:953dd78a34d3 draft default tip

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"planemo upload commit be4b24b2dacc3f23538068d5a6082bca246f6887"
author recetox
date Tue, 25 Aug 2020 11:15:49 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager_conf.xml	Tue Aug 25 11:15:49 2020 +0000
@@ -0,0 +1,20 @@
+<?xml version="1.0"?>
+<data_managers>
+    <data_manager tool_file="data_manager/recetox_metabolite_fetcher.xml" id="recetox_metabolite_fetcher">
+        <data_table name="recetox_metabolite_databases">
+            <output>
+                <column name="value"/>
+                <column name="name"/>
+                <column name="date"/>
+                <column name="path" output_ref="out_file">
+                    <move type="file">
+                        <source>${path}</source>
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">metabolite_dbs/${path}</target>
+                    </move>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/metabolite_dbs/${path}</value_translation>
+		            <value_translation type="function">abspath</value_translation>
+                </column>
+            </output>
+        </data_table>
+    </data_manager>
+</data_managers>
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