annotate data_manager_conf.xml @ 0:953dd78a34d3 draft default tip

"planemo upload commit be4b24b2dacc3f23538068d5a6082bca246f6887"
author recetox
date Tue, 25 Aug 2020 11:15:49 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
953dd78a34d3 "planemo upload commit be4b24b2dacc3f23538068d5a6082bca246f6887"
recetox
parents:
diff changeset
1 <?xml version="1.0"?>
953dd78a34d3 "planemo upload commit be4b24b2dacc3f23538068d5a6082bca246f6887"
recetox
parents:
diff changeset
2 <data_managers>
953dd78a34d3 "planemo upload commit be4b24b2dacc3f23538068d5a6082bca246f6887"
recetox
parents:
diff changeset
3 <data_manager tool_file="data_manager/recetox_metabolite_fetcher.xml" id="recetox_metabolite_fetcher">
953dd78a34d3 "planemo upload commit be4b24b2dacc3f23538068d5a6082bca246f6887"
recetox
parents:
diff changeset
4 <data_table name="recetox_metabolite_databases">
953dd78a34d3 "planemo upload commit be4b24b2dacc3f23538068d5a6082bca246f6887"
recetox
parents:
diff changeset
5 <output>
953dd78a34d3 "planemo upload commit be4b24b2dacc3f23538068d5a6082bca246f6887"
recetox
parents:
diff changeset
6 <column name="value"/>
953dd78a34d3 "planemo upload commit be4b24b2dacc3f23538068d5a6082bca246f6887"
recetox
parents:
diff changeset
7 <column name="name"/>
953dd78a34d3 "planemo upload commit be4b24b2dacc3f23538068d5a6082bca246f6887"
recetox
parents:
diff changeset
8 <column name="date"/>
953dd78a34d3 "planemo upload commit be4b24b2dacc3f23538068d5a6082bca246f6887"
recetox
parents:
diff changeset
9 <column name="path" output_ref="out_file">
953dd78a34d3 "planemo upload commit be4b24b2dacc3f23538068d5a6082bca246f6887"
recetox
parents:
diff changeset
10 <move type="file">
953dd78a34d3 "planemo upload commit be4b24b2dacc3f23538068d5a6082bca246f6887"
recetox
parents:
diff changeset
11 <source>${path}</source>
953dd78a34d3 "planemo upload commit be4b24b2dacc3f23538068d5a6082bca246f6887"
recetox
parents:
diff changeset
12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">metabolite_dbs/${path}</target>
953dd78a34d3 "planemo upload commit be4b24b2dacc3f23538068d5a6082bca246f6887"
recetox
parents:
diff changeset
13 </move>
953dd78a34d3 "planemo upload commit be4b24b2dacc3f23538068d5a6082bca246f6887"
recetox
parents:
diff changeset
14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/metabolite_dbs/${path}</value_translation>
953dd78a34d3 "planemo upload commit be4b24b2dacc3f23538068d5a6082bca246f6887"
recetox
parents:
diff changeset
15 <value_translation type="function">abspath</value_translation>
953dd78a34d3 "planemo upload commit be4b24b2dacc3f23538068d5a6082bca246f6887"
recetox
parents:
diff changeset
16 </column>
953dd78a34d3 "planemo upload commit be4b24b2dacc3f23538068d5a6082bca246f6887"
recetox
parents:
diff changeset
17 </output>
953dd78a34d3 "planemo upload commit be4b24b2dacc3f23538068d5a6082bca246f6887"
recetox
parents:
diff changeset
18 </data_table>
953dd78a34d3 "planemo upload commit be4b24b2dacc3f23538068d5a6082bca246f6887"
recetox
parents:
diff changeset
19 </data_manager>
953dd78a34d3 "planemo upload commit be4b24b2dacc3f23538068d5a6082bca246f6887"
recetox
parents:
diff changeset
20 </data_managers>