diff tool_dependencies.xml @ 0:84f5e02c76f3 draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed May 21 03:30:16 2014 -0400
@@ -0,0 +1,44 @@
+<?xml version="1.0.1"?>
+<tool_dependency>
+<package name="overlapSelect" version="latest">
+	<install version="1.0">
+	<actions>
+	<action type="shell_command">
+		mkdir $INSTALL_DIR/bin;
+		mkdir overlapSelect;
+
+		if [[ "$(uname -m)" = "x86_64" ]] ; then
+		if [[ "$(uname)" = "Linux" ]] ; then
+		echo "We are in first"
+		wget -nH --cut-dirs=3 -O overlapSelect/overlapSelect http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/overlapSelect
+		fi
+		if [[ "$(uname)" = "Darwin" ]]; then
+		echo "We are in second"
+		wget -nH --cut-dirs=3 -O overlapSelect/overlapSelect overlapSelect/ http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/overlapSelect
+		fi
+		fi
+		if [[ "$(uname -m)" = "i386" ]] ; then
+		if [[ "$(uname)" = "Darwin" ]]; then
+		echo "We are in third"
+		wget -nH --cut-dirs=3 -O overlapSelect/overlapSelect http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.i386/overlapSelect
+		fi
+		fi
+
+                chmod u+x overlapSelect/overlapSelect;
+	</action>
+        <action type="move_file">
+	        <source>overlapSelect</source>
+		<destination>$INSTALL_DIR/bin</destination>
+	</action>
+        <action type="set_environment">
+ 	       <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+	</action>
+	</actions>
+	</install>
+	<readme>
+	The Tool dependencies script download the executable tool available at http://hgdownload.cse.ucsc.edu/admin/exe/ . 
+	The script tests if the Operationg sytem is either Mac or Linux.
+	Compiling the source for this tool from implies the installation of mysql-dev libraries. 
+	</readme>
+</package>
+</tool_dependency>