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1 <?xml version="1.0.1"?>
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2 <tool_dependency>
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3 <package name="overlapSelect" version="latest">
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4 <install version="1.0">
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5 <actions>
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6 <action type="shell_command">
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7 mkdir $INSTALL_DIR/bin;
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8 mkdir overlapSelect;
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9
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10 if [[ "$(uname -m)" = "x86_64" ]] ; then
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11 if [[ "$(uname)" = "Linux" ]] ; then
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12 echo "We are in first"
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13 wget -nH --cut-dirs=3 -O overlapSelect/overlapSelect http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/overlapSelect
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14 fi
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15 if [[ "$(uname)" = "Darwin" ]]; then
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16 echo "We are in second"
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17 wget -nH --cut-dirs=3 -O overlapSelect/overlapSelect overlapSelect/ http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/overlapSelect
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18 fi
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19 fi
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20 if [[ "$(uname -m)" = "i386" ]] ; then
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21 if [[ "$(uname)" = "Darwin" ]]; then
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22 echo "We are in third"
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23 wget -nH --cut-dirs=3 -O overlapSelect/overlapSelect http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.i386/overlapSelect
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24 fi
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25 fi
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26
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27 chmod u+x overlapSelect/overlapSelect;
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28 </action>
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29 <action type="move_file">
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30 <source>overlapSelect</source>
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31 <destination>$INSTALL_DIR/bin</destination>
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32 </action>
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33 <action type="set_environment">
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34 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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35 </action>
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36 </actions>
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37 </install>
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38 <readme>
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39 The Tool dependencies script download the executable tool available at http://hgdownload.cse.ucsc.edu/admin/exe/ .
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40 The script tests if the Operationg sytem is either Mac or Linux.
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41 Compiling the source for this tool from implies the installation of mysql-dev libraries.
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42 </readme>
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43 </package>
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44 </tool_dependency>
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