Mercurial > repos > public-health-bioinformatics > screen_abricate_report

annotate abricate_report_screening_files.loc.sample @ 1:45542cd244ad draft default tip

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"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report commit 1d569fc27b052d1982d82ca19455caaff6386f46"
author public-health-bioinformatics
date Thu, 31 Oct 2019 15:14:36 -0400
parents 2c6153023368
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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0
2c6153023368 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report"
public-health-bioinformatics
parents:
diff changeset
1 # Expect three columns, tab separated, as follows:
2c6153023368 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report"
public-health-bioinformatics
parents:
diff changeset
2 # - value (Galaxy records this in the Galaxy DB)
2c6153023368 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report"
public-health-bioinformatics
parents:
diff changeset
3 # - name (Galaxy shows this in the UI)
2c6153023368 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report"
public-health-bioinformatics
parents:
diff changeset
4 # - path (Path to the abricate report screening file (tsv format))
2c6153023368 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report"
public-health-bioinformatics
parents:
diff changeset
5 #
2c6153023368 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report"
public-health-bioinformatics
parents:
diff changeset
6 # e.g.
2c6153023368 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/screen_abricate_report"
public-health-bioinformatics
parents:
diff changeset
7 # 76cc857a-7747-4d69-b2a3-a8fbddbf64c2<tab>Carbapenemase Genes<tab>/path/to/screening_file.tsv