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annotate assign_clades.xml @ 2:0d3dad155413 draft

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planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit e6d31e4b3666b5e1d322e22f44526f23c66692fb
author public-health-bioinformatics
date Thu, 17 Jan 2019 19:09:30 -0500
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0d3dad155413 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit e6d31e4b3666b5e1d322e22f44526f23c66692fb
public-health-bioinformatics
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1 <tool id="assign_clades" name="Assign Clades" version="0.0.1">
0d3dad155413 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit e6d31e4b3666b5e1d322e22f44526f23c66692fb
public-health-bioinformatics
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2 <requirements>
0d3dad155413 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit e6d31e4b3666b5e1d322e22f44526f23c66692fb
public-health-bioinformatics
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3 <requirement type="package" version="1.70">biopython</requirement>
0d3dad155413 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit e6d31e4b3666b5e1d322e22f44526f23c66692fb
public-health-bioinformatics
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4 </requirements>
0d3dad155413 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit e6d31e4b3666b5e1d322e22f44526f23c66692fb
public-health-bioinformatics
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5 <command detect_errors="exit_code"><![CDATA[
0d3dad155413 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit e6d31e4b3666b5e1d322e22f44526f23c66692fb
public-health-bioinformatics
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6 python $__tool_directory__/assign_clades.py
0d3dad155413 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit e6d31e4b3666b5e1d322e22f44526f23c66692fb
public-health-bioinformatics
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7 '$input_fasta'
0d3dad155413 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit e6d31e4b3666b5e1d322e22f44526f23c66692fb
public-health-bioinformatics
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8 '$clade_definitions'
0d3dad155413 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit e6d31e4b3666b5e1d322e22f44526f23c66692fb
public-health-bioinformatics
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9 '$output_file'
0d3dad155413 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit e6d31e4b3666b5e1d322e22f44526f23c66692fb
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10 ]]></command>
0d3dad155413 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit e6d31e4b3666b5e1d322e22f44526f23c66692fb
public-health-bioinformatics
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11 <inputs>
0d3dad155413 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit e6d31e4b3666b5e1d322e22f44526f23c66692fb
public-health-bioinformatics
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12 <param name="input_fasta" format="fasta" type="data" />
0d3dad155413 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit e6d31e4b3666b5e1d322e22f44526f23c66692fb
public-health-bioinformatics
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13 <param name="clade_definitions" format="csv" type="data" />
0d3dad155413 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit e6d31e4b3666b5e1d322e22f44526f23c66692fb
public-health-bioinformatics
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14 </inputs>
0d3dad155413 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit e6d31e4b3666b5e1d322e22f44526f23c66692fb
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15 <outputs>
0d3dad155413 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit e6d31e4b3666b5e1d322e22f44526f23c66692fb
public-health-bioinformatics
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16 <data name="output_file" format="fasta"/>
0d3dad155413 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit e6d31e4b3666b5e1d322e22f44526f23c66692fb
public-health-bioinformatics
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17 </outputs>
0d3dad155413 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit e6d31e4b3666b5e1d322e22f44526f23c66692fb
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18 <tests>
0d3dad155413 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit e6d31e4b3666b5e1d322e22f44526f23c66692fb
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19 <test>
0d3dad155413 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit e6d31e4b3666b5e1d322e22f44526f23c66692fb
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20 <param name="input_fasta" value="input_fasta.fasta" />
0d3dad155413 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit e6d31e4b3666b5e1d322e22f44526f23c66692fb
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21 <param name="clade_definitions" value="clades.csv" />
0d3dad155413 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit e6d31e4b3666b5e1d322e22f44526f23c66692fb
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22 <output name="output_file" value="output.fasta" />
0d3dad155413 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit e6d31e4b3666b5e1d322e22f44526f23c66692fb
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23 </test>
0d3dad155413 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit e6d31e4b3666b5e1d322e22f44526f23c66692fb
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24 </tests>
0d3dad155413 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit e6d31e4b3666b5e1d322e22f44526f23c66692fb
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25 <help><![CDATA[
0d3dad155413 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit e6d31e4b3666b5e1d322e22f44526f23c66692fb
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26 ]]></help>
0d3dad155413 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit e6d31e4b3666b5e1d322e22f44526f23c66692fb
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27 <citations>
0d3dad155413 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit e6d31e4b3666b5e1d322e22f44526f23c66692fb
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28 </citations>
0d3dad155413 planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit e6d31e4b3666b5e1d322e22f44526f23c66692fb
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29 </tool>