Mercurial > repos > prog > lcmsmatching
diff MsDbOutputStream.R @ 6:b8f70d8216b3 draft
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit b3a4e34cf9356447ae3507cc6fe2ff6a1f24afbc-dirty
| author | prog |
|---|---|
| date | Mon, 27 Mar 2017 06:27:29 -0400 |
| parents | 3afe41d3e9e7 |
| children |
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--- a/MsDbOutputStream.R Thu Mar 16 08:15:11 2017 -0400 +++ b/MsDbOutputStream.R Mon Mar 27 06:27:29 2017 -0400 @@ -7,7 +7,7 @@ # CLASS DECLARATION # ##################### - MsDbOutputStream <- setRefClass("MsDbOutputStream", fields = list(.keep.unused = "logical", .one.line = "logical", .match.sep = "character", .output.fields = "ANY", .multval.field.sep = "character", .first.val = "logical", .ascii = "logical", .noapostrophe = "logical", .noplusminus = "logical", .nogreek = "logical")) + MsDbOutputStream <- setRefClass("MsDbOutputStream", fields = list(.keep.unused = "logical", .one.line = "logical", .match.sep = "character", .multval.field.sep = "character", .first.val = "logical", .ascii = "logical", .noapostrophe = "logical", .noplusminus = "logical", .nogreek = "logical", .rtunit = 'character')) ############### # CONSTRUCTOR # @@ -20,20 +20,20 @@ #' @return #' @examples #' stream <- MsDbOutputDataFrameStream$new(one.line = TRUE) - MsDbOutputStream$methods( initialize = function(keep.unused = FALSE, one.line = FALSE, match.sep = MSDB.DFT.MATCH.SEP, output.fields = msdb.get.dft.output.fields(), multval.field.sep = MSDB.DFT.OUTPUT.MULTIVAL.FIELD.SEP, first.val = FALSE, ascii = FALSE, noapostrophe = FALSE, noplusminus = FALSE, nogreek = FALSE, ...) { + MsDbOutputStream$methods( initialize = function(keep.unused = FALSE, one.line = FALSE, match.sep = MSDB.DFT.MATCH.SEP, multval.field.sep = MSDB.DFT.OUTPUT.MULTIVAL.FIELD.SEP, first.val = FALSE, ascii = FALSE, noapostrophe = FALSE, noplusminus = FALSE, nogreek = FALSE, rtunit = MSDB.RTUNIT.SEC, ...) { + + callSuper(...) .keep.unused <<- keep.unused .one.line <<- one.line .match.sep <<- match.sep - .output.fields <<- output.fields .multval.field.sep <<- multval.field.sep .first.val <<- first.val .ascii <<- ascii .noapostrophe <<- noapostrophe .noplusminus <<- noplusminus .nogreek <<- nogreek - - callSuper(...) + .rtunit <<- rtunit }) #################